data_6D26 # _model_server_result.job_id xmJRctinsvOdssCFboDrMg _model_server_result.datetime_utc '2024-11-23 04:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2411}' # _entry.id 6D26 # _exptl.entry_id 6D26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D26 _cell.length_a 50.457 _cell.length_b 61.71 _cell.length_c 266.517 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 11 1_555 A SG CYS 200 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 105 A CYS 104 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C THR 432 A THR 2307 1_555 A N YCM 433 A YCM 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C YCM 433 A YCM 2308 1_555 A N PRO 434 A PRO 2309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 426 n n C1 O2 SIN sing 427 n n C1 C2 SIN sing 428 n n O2 HO2 SIN sing 429 n n C2 C3 SIN sing 430 n n C2 H21 SIN sing 431 n n C2 H22 SIN sing 432 n n C3 C4 SIN sing 433 n n C3 H31 SIN sing 434 n n C3 H32 SIN sing 435 n n C4 O3 SIN doub 436 n n C4 O4 SIN sing 437 n n O4 HO4 SIN sing 438 n n # _atom_sites.entry_id 6D26 _atom_sites.fract_transf_matrix[1][1] 0.019819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FSY A 1 2401 1 FSY FEV . C 3 SO4 A 1 2402 1 SO4 SO4 . D 3 SO4 A 1 2403 2 SO4 SO4 . E 3 SO4 A 1 2404 3 SO4 SO4 . F 3 SO4 A 1 2405 4 SO4 SO4 . G 3 SO4 A 1 2406 5 SO4 SO4 . H 3 SO4 A 1 2407 6 SO4 SO4 . I 3 SO4 A 1 2408 7 SO4 SO4 . J 3 SO4 A 1 2409 8 SO4 SO4 . K 3 SO4 A 1 2410 9 SO4 SO4 . L 4 SIN A 1 2411 1 SIN SIN . M 4 SIN A 1 2412 3 SIN SIN . N 4 SIN A 1 2413 4 SIN SIN . O 4 SIN A 1 2414 7 SIN SIN . P 4 SIN A 1 2415 8 SIN SIN . Q 5 PGE A 1 2416 1 PGE PGE . R 6 OLA A 1 2417 1 OLA OLA . S 7 PGO A 1 2418 1 PGO PGO . T 8 HOH A 1 2501 5 HOH HOH . T 8 HOH A 2 2502 2 HOH HOH . T 8 HOH A 3 2503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . L 4 -8.507 84.388 300.853 1 92.68 ? C1 SIN 2411 A 1 HETATM 2 O O1 SIN . . . L 4 -8.837 83.921 299.741 1 93.32 ? O1 SIN 2411 A 1 HETATM 3 O O2 SIN . . . L 4 -8.436 85.628 300.992 1 94.59 ? O2 SIN 2411 A 1 HETATM 4 C C2 SIN . . . L 4 -8.194 83.469 302.01 1 91.17 ? C2 SIN 2411 A 1 HETATM 5 C C3 SIN . . . L 4 -8.368 84.219 303.326 1 93.3 ? C3 SIN 2411 A 1 HETATM 6 C C4 SIN . . . L 4 -8.242 83.245 304.474 1 100.03 ? C4 SIN 2411 A 1 HETATM 7 O O3 SIN . . . L 4 -7.733 82.12 304.293 1 104.07 ? O3 SIN 2411 A 1 HETATM 8 O O4 SIN . . . L 4 -8.647 83.545 305.617 1 101.99 ? O4 SIN 2411 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #