data_6D26 # _model_server_result.job_id AW1P6JuRm5NDZAvjBp8EwQ _model_server_result.datetime_utc '2024-11-23 04:44:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":2416}' # _entry.id 6D26 # _exptl.entry_id 6D26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D26 _cell.length_a 50.457 _cell.length_b 61.71 _cell.length_c 266.517 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 11 1_555 A SG CYS 200 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 105 A CYS 104 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C THR 432 A THR 2307 1_555 A N YCM 433 A YCM 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C YCM 433 A YCM 2308 1_555 A N PRO 434 A PRO 2309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 338 n n C1 C2 PGE sing 339 n n C1 H1 PGE sing 340 n n C1 H12 PGE sing 341 n n O1 HO1 PGE sing 342 n n C2 O2 PGE sing 343 n n C2 H2 PGE sing 344 n n C2 H22 PGE sing 345 n n O2 C3 PGE sing 346 n n C3 C4 PGE sing 347 n n C3 H3 PGE sing 348 n n C3 H32 PGE sing 349 n n C4 O3 PGE sing 350 n n C4 H4 PGE sing 351 n n C4 H42 PGE sing 352 n n O4 C6 PGE sing 353 n n O4 HO4 PGE sing 354 n n C6 C5 PGE sing 355 n n C6 H6 PGE sing 356 n n C6 H62 PGE sing 357 n n C5 O3 PGE sing 358 n n C5 H5 PGE sing 359 n n C5 H52 PGE sing 360 n n # _atom_sites.entry_id 6D26 _atom_sites.fract_transf_matrix[1][1] 0.019819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FSY A 1 2401 1 FSY FEV . C 3 SO4 A 1 2402 1 SO4 SO4 . D 3 SO4 A 1 2403 2 SO4 SO4 . E 3 SO4 A 1 2404 3 SO4 SO4 . F 3 SO4 A 1 2405 4 SO4 SO4 . G 3 SO4 A 1 2406 5 SO4 SO4 . H 3 SO4 A 1 2407 6 SO4 SO4 . I 3 SO4 A 1 2408 7 SO4 SO4 . J 3 SO4 A 1 2409 8 SO4 SO4 . K 3 SO4 A 1 2410 9 SO4 SO4 . L 4 SIN A 1 2411 1 SIN SIN . M 4 SIN A 1 2412 3 SIN SIN . N 4 SIN A 1 2413 4 SIN SIN . O 4 SIN A 1 2414 7 SIN SIN . P 4 SIN A 1 2415 8 SIN SIN . Q 5 PGE A 1 2416 1 PGE PGE . R 6 OLA A 1 2417 1 OLA OLA . S 7 PGO A 1 2418 1 PGO PGO . T 8 HOH A 1 2501 5 HOH HOH . T 8 HOH A 2 2502 2 HOH HOH . T 8 HOH A 3 2503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . Q 5 -18.232 84.728 335.953 1 108.14 ? C1 PGE 2416 A 1 HETATM 2 O O1 PGE . . . Q 5 -19.244 83.742 336.101 1 108.93 ? O1 PGE 2416 A 1 HETATM 3 C C2 PGE . . . Q 5 -16.907 84.036 335.703 1 107.92 ? C2 PGE 2416 A 1 HETATM 4 O O2 PGE . . . Q 5 -15.851 84.938 335.965 1 108.68 ? O2 PGE 2416 A 1 HETATM 5 C C3 PGE . . . Q 5 -15.449 85.676 334.83 1 109.8 ? C3 PGE 2416 A 1 HETATM 6 C C4 PGE . . . Q 5 -15.493 87.155 335.165 1 111.98 ? C4 PGE 2416 A 1 HETATM 7 O O4 PGE . . . Q 5 -18.093 87.942 331.288 1 107.22 ? O4 PGE 2416 A 1 HETATM 8 C C6 PGE . . . Q 5 -16.851 88.209 331.925 1 110.67 ? C6 PGE 2416 A 1 HETATM 9 C C5 PGE . . . Q 5 -16.898 87.675 333.342 1 113.35 ? C5 PGE 2416 A 1 HETATM 10 O O3 PGE . . . Q 5 -15.648 87.887 333.967 1 113.69 ? O3 PGE 2416 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #