data_6D27
#
_model_server_result.job_id            NyMBWxe4J3FRte8VifT5xA 
_model_server_result.datetime_utc      '2024-11-05 08:36:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":2417}' 
#
_entry.id    6D27 
#
_exptl.entry_id    6D27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D27 
_cell.length_a            52.175 
_cell.length_b            62.636 
_cell.length_c            272.215 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 11 1_555 A SG CYS 200 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 105 A CYS 104 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A C THR 432 A THR 2307 1_555 A N YCM 433 A YCM 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C YCM 433 A YCM 2308 1_555 A N PRO 434 A PRO 2309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGO sing 407 n n 
C1 O1 PGO sing 408 n n 
C1 H11 PGO sing 409 n n 
C1 H12 PGO sing 410 n n 
C2 C3 PGO sing 411 n n 
C2 O2 PGO sing 412 n n 
C2 H2 PGO sing 413 n n 
C3 H31 PGO sing 414 n n 
C3 H32 PGO sing 415 n n 
C3 H33 PGO sing 416 n n 
O1 HO1 PGO sing 417 n n 
O2 HO2 PGO sing 418 n n 
#
_atom_sites.entry_id                     6D27 
_atom_sites.fract_transf_matrix[1][1]    0.019166 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 2401 1 SO4 SO4 . 
C 2 SO4 A 1 2402 2 SO4 SO4 . 
D 2 SO4 A 1 2403 3 SO4 SO4 . 
E 2 SO4 A 1 2404 5 SO4 SO4 . 
F 2 SO4 A 1 2405 7 SO4 SO4 . 
G 2 SO4 A 1 2406 8 SO4 SO4 . 
H 2 SO4 A 1 2407 9 SO4 SO4 . 
I 3 FT4 A 1 2408 1 FT4 ZIN . 
J 4 MES A 1 2409 1 MES MES . 
K 5 OLA A 1 2410 1 OLA OLA . 
L 5 OLA A 1 2411 2 OLA OLA . 
M 6 PGE A 1 2412 1 PGE PGE . 
N 6 PGE A 1 2413 2 PGE PGE . 
O 7 PGO A 1 2414 1 PGO PGO . 
P 7 PGO A 1 2415 2 PGO PGO . 
Q 7 PGO A 1 2416 3 PGO PGO . 
R 7 PGO A 1 2417 4 PGO PGO . 
S 8 PEG A 1 2418 1 PEG PEG . 
T 9 HOH A 1 2501 4 HOH HOH . 
T 9 HOH A 2 2502 5 HOH HOH . 
T 9 HOH A 3 2503 2 HOH HOH . 
T 9 HOH A 4 2504 3 HOH HOH . 
T 9 HOH A 5 2505 8 HOH HOH . 
T 9 HOH A 6 2506 11 HOH HOH . 
T 9 HOH A 7 2507 12 HOH HOH . 
T 9 HOH A 8 2508 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGO . . . R 7 31.099 -46.647 293.919 1 98.86 ? C1 PGO 2417 A 1 
HETATM 2 C C2 PGO . . . R 7 30.059 -46.502 295.027 1 97.25 ? C2 PGO 2417 A 1 
HETATM 3 C C3 PGO . . . R 7 30.621 -45.784 296.25 1 82.13 ? C3 PGO 2417 A 1 
HETATM 4 O O1 PGO . . . R 7 30.49 -47.187 292.74 1 101.3 ? O1 PGO 2417 A 1 
HETATM 5 O O2 PGO . . . R 7 29.6 -47.799 295.42 1 102.06 ? O2 PGO 2417 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           5 
#