data_6D28 # _model_server_result.job_id 3cJQdVCLp3iyynr9AIE_rg _model_server_result.datetime_utc '2024-11-01 05:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6D28 # _exptl.entry_id 6D28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.293 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D28 _cell.length_a 89.2 _cell.length_b 99.18 _cell.length_c 63.071 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N6 O4' _chem_comp.formula_weight 308.293 _chem_comp.id NEC _chem_comp.mon_nstd_flag . _chem_comp.name "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5' O5' NEC doub 259 n n C5' N5' NEC sing 260 n n C5' C4' NEC sing 261 n n N5' C51 NEC sing 262 n n N5' HN5 NEC sing 263 n n C51 C52 NEC sing 264 n n C51 H511 NEC sing 265 n n C51 H512 NEC sing 266 n n C52 H521 NEC sing 267 n n C52 H522 NEC sing 268 n n C52 H523 NEC sing 269 n n C4' O4' NEC sing 270 n n C4' C3' NEC sing 271 n n C4' H4' NEC sing 272 n n O4' C1' NEC sing 273 n n C3' O3' NEC sing 274 n n C3' C2' NEC sing 275 n n C3' H3' NEC sing 276 n n O3' HO3' NEC sing 277 n n C2' O2' NEC sing 278 n n C2' C1' NEC sing 279 n n C2' H2' NEC sing 280 n n O2' HO2' NEC sing 281 n n C1' N9 NEC sing 282 n n C1' H1' NEC sing 283 n n N9 C8 NEC sing 284 n y N9 C4 NEC sing 285 n y C8 N7 NEC doub 286 n y C8 H8 NEC sing 287 n n N7 C5 NEC sing 288 n y C5 C6 NEC sing 289 n y C5 C4 NEC doub 290 n y C6 N6 NEC sing 291 n n C6 N1 NEC doub 292 n y N6 HN61 NEC sing 293 n n N6 HN62 NEC sing 294 n n N1 C2 NEC sing 295 n y C2 N3 NEC doub 296 n y C2 H2 NEC sing 297 n n N3 C4 NEC sing 298 n y # _atom_sites.entry_id 6D28 _atom_sites.fract_transf_matrix[1][1] 0.011211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEC A 1 401 338 NEC NEC . C 3 M2M A 1 402 401 M2M M2M . D 4 HOH A 1 501 513 HOH HOH . D 4 HOH A 2 502 515 HOH HOH . D 4 HOH A 3 503 466 HOH HOH . D 4 HOH A 4 504 590 HOH HOH . D 4 HOH A 5 505 581 HOH HOH . D 4 HOH A 6 506 610 HOH HOH . D 4 HOH A 7 507 545 HOH HOH . D 4 HOH A 8 508 454 HOH HOH . D 4 HOH A 9 509 596 HOH HOH . D 4 HOH A 10 510 597 HOH HOH . D 4 HOH A 11 511 605 HOH HOH . D 4 HOH A 12 512 532 HOH HOH . D 4 HOH A 13 513 620 HOH HOH . D 4 HOH A 14 514 519 HOH HOH . D 4 HOH A 15 515 402 HOH HOH . D 4 HOH A 16 516 459 HOH HOH . D 4 HOH A 17 517 473 HOH HOH . D 4 HOH A 18 518 457 HOH HOH . D 4 HOH A 19 519 563 HOH HOH . D 4 HOH A 20 520 604 HOH HOH . D 4 HOH A 21 521 423 HOH HOH . D 4 HOH A 22 522 627 HOH HOH . D 4 HOH A 23 523 446 HOH HOH . D 4 HOH A 24 524 406 HOH HOH . D 4 HOH A 25 525 488 HOH HOH . D 4 HOH A 26 526 621 HOH HOH . D 4 HOH A 27 527 411 HOH HOH . D 4 HOH A 28 528 448 HOH HOH . D 4 HOH A 29 529 548 HOH HOH . D 4 HOH A 30 530 434 HOH HOH . D 4 HOH A 31 531 453 HOH HOH . D 4 HOH A 32 532 481 HOH HOH . D 4 HOH A 33 533 449 HOH HOH . D 4 HOH A 34 534 521 HOH HOH . D 4 HOH A 35 535 562 HOH HOH . D 4 HOH A 36 536 528 HOH HOH . D 4 HOH A 37 537 433 HOH HOH . D 4 HOH A 38 538 452 HOH HOH . D 4 HOH A 39 539 524 HOH HOH . D 4 HOH A 40 540 518 HOH HOH . D 4 HOH A 41 541 415 HOH HOH . D 4 HOH A 42 542 403 HOH HOH . D 4 HOH A 43 543 601 HOH HOH . D 4 HOH A 44 544 600 HOH HOH . D 4 HOH A 45 545 530 HOH HOH . D 4 HOH A 46 546 442 HOH HOH . D 4 HOH A 47 547 404 HOH HOH . D 4 HOH A 48 548 419 HOH HOH . D 4 HOH A 49 549 409 HOH HOH . D 4 HOH A 50 550 469 HOH HOH . D 4 HOH A 51 551 416 HOH HOH . D 4 HOH A 52 552 467 HOH HOH . D 4 HOH A 53 553 430 HOH HOH . D 4 HOH A 54 554 451 HOH HOH . D 4 HOH A 55 555 418 HOH HOH . D 4 HOH A 56 556 412 HOH HOH . D 4 HOH A 57 557 460 HOH HOH . D 4 HOH A 58 558 455 HOH HOH . D 4 HOH A 59 559 606 HOH HOH . D 4 HOH A 60 560 461 HOH HOH . D 4 HOH A 61 561 537 HOH HOH . D 4 HOH A 62 562 441 HOH HOH . D 4 HOH A 63 563 414 HOH HOH . D 4 HOH A 64 564 549 HOH HOH . D 4 HOH A 65 565 579 HOH HOH . D 4 HOH A 66 566 482 HOH HOH . D 4 HOH A 67 567 427 HOH HOH . D 4 HOH A 68 568 487 HOH HOH . D 4 HOH A 69 569 436 HOH HOH . D 4 HOH A 70 570 624 HOH HOH . D 4 HOH A 71 571 410 HOH HOH . D 4 HOH A 72 572 443 HOH HOH . D 4 HOH A 73 573 589 HOH HOH . D 4 HOH A 74 574 424 HOH HOH . D 4 HOH A 75 575 421 HOH HOH . D 4 HOH A 76 576 428 HOH HOH . D 4 HOH A 77 577 584 HOH HOH . D 4 HOH A 78 578 582 HOH HOH . D 4 HOH A 79 579 486 HOH HOH . D 4 HOH A 80 580 422 HOH HOH . D 4 HOH A 81 581 407 HOH HOH . D 4 HOH A 82 582 408 HOH HOH . D 4 HOH A 83 583 561 HOH HOH . D 4 HOH A 84 584 445 HOH HOH . D 4 HOH A 85 585 478 HOH HOH . D 4 HOH A 86 586 574 HOH HOH . D 4 HOH A 87 587 450 HOH HOH . D 4 HOH A 88 588 477 HOH HOH . D 4 HOH A 89 589 483 HOH HOH . D 4 HOH A 90 590 437 HOH HOH . D 4 HOH A 91 591 471 HOH HOH . D 4 HOH A 92 592 547 HOH HOH . D 4 HOH A 93 593 501 HOH HOH . D 4 HOH A 94 594 425 HOH HOH . D 4 HOH A 95 595 510 HOH HOH . D 4 HOH A 96 596 626 HOH HOH . D 4 HOH A 97 597 616 HOH HOH . D 4 HOH A 98 598 564 HOH HOH . D 4 HOH A 99 599 417 HOH HOH . D 4 HOH A 100 600 479 HOH HOH . D 4 HOH A 101 601 438 HOH HOH . D 4 HOH A 102 602 598 HOH HOH . D 4 HOH A 103 603 614 HOH HOH . D 4 HOH A 104 604 593 HOH HOH . D 4 HOH A 105 605 525 HOH HOH . D 4 HOH A 106 606 623 HOH HOH . D 4 HOH A 107 607 413 HOH HOH . D 4 HOH A 108 608 439 HOH HOH . D 4 HOH A 109 609 447 HOH HOH . D 4 HOH A 110 610 535 HOH HOH . D 4 HOH A 111 611 536 HOH HOH . D 4 HOH A 112 612 531 HOH HOH . D 4 HOH A 113 613 440 HOH HOH . D 4 HOH A 114 614 534 HOH HOH . D 4 HOH A 115 615 429 HOH HOH . D 4 HOH A 116 616 522 HOH HOH . D 4 HOH A 117 617 456 HOH HOH . D 4 HOH A 118 618 496 HOH HOH . D 4 HOH A 119 619 431 HOH HOH . D 4 HOH A 120 620 555 HOH HOH . D 4 HOH A 121 621 492 HOH HOH . D 4 HOH A 122 622 607 HOH HOH . D 4 HOH A 123 623 476 HOH HOH . D 4 HOH A 124 624 576 HOH HOH . D 4 HOH A 125 625 509 HOH HOH . D 4 HOH A 126 626 538 HOH HOH . D 4 HOH A 127 627 516 HOH HOH . D 4 HOH A 128 628 550 HOH HOH . D 4 HOH A 129 629 526 HOH HOH . D 4 HOH A 130 630 571 HOH HOH . D 4 HOH A 131 631 592 HOH HOH . D 4 HOH A 132 632 619 HOH HOH . D 4 HOH A 133 633 511 HOH HOH . D 4 HOH A 134 634 472 HOH HOH . D 4 HOH A 135 635 484 HOH HOH . D 4 HOH A 136 636 529 HOH HOH . D 4 HOH A 137 637 520 HOH HOH . D 4 HOH A 138 638 462 HOH HOH . D 4 HOH A 139 639 544 HOH HOH . D 4 HOH A 140 640 541 HOH HOH . D 4 HOH A 141 641 585 HOH HOH . D 4 HOH A 142 642 435 HOH HOH . D 4 HOH A 143 643 512 HOH HOH . D 4 HOH A 144 644 587 HOH HOH . D 4 HOH A 145 645 463 HOH HOH . D 4 HOH A 146 646 543 HOH HOH . D 4 HOH A 147 647 470 HOH HOH . D 4 HOH A 148 648 485 HOH HOH . D 4 HOH A 149 649 542 HOH HOH . D 4 HOH A 150 650 533 HOH HOH . D 4 HOH A 151 651 523 HOH HOH . D 4 HOH A 152 652 540 HOH HOH . D 4 HOH A 153 653 498 HOH HOH . D 4 HOH A 154 654 480 HOH HOH . D 4 HOH A 155 655 432 HOH HOH . D 4 HOH A 156 656 622 HOH HOH . D 4 HOH A 157 657 612 HOH HOH . D 4 HOH A 158 658 611 HOH HOH . D 4 HOH A 159 659 506 HOH HOH . D 4 HOH A 160 660 489 HOH HOH . D 4 HOH A 161 661 491 HOH HOH . D 4 HOH A 162 662 575 HOH HOH . D 4 HOH A 163 663 577 HOH HOH . D 4 HOH A 164 664 572 HOH HOH . D 4 HOH A 165 665 505 HOH HOH . D 4 HOH A 166 666 465 HOH HOH . D 4 HOH A 167 667 625 HOH HOH . D 4 HOH A 168 668 568 HOH HOH . D 4 HOH A 169 669 552 HOH HOH . D 4 HOH A 170 670 580 HOH HOH . D 4 HOH A 171 671 502 HOH HOH . D 4 HOH A 172 672 608 HOH HOH . D 4 HOH A 173 673 567 HOH HOH . D 4 HOH A 174 674 444 HOH HOH . D 4 HOH A 175 675 594 HOH HOH . D 4 HOH A 176 676 618 HOH HOH . D 4 HOH A 177 677 613 HOH HOH . D 4 HOH A 178 678 458 HOH HOH . D 4 HOH A 179 679 500 HOH HOH . D 4 HOH A 180 680 557 HOH HOH . D 4 HOH A 181 681 517 HOH HOH . D 4 HOH A 182 682 495 HOH HOH . D 4 HOH A 183 683 553 HOH HOH . D 4 HOH A 184 684 494 HOH HOH . D 4 HOH A 185 685 464 HOH HOH . D 4 HOH A 186 686 617 HOH HOH . D 4 HOH A 187 687 578 HOH HOH . D 4 HOH A 188 688 539 HOH HOH . D 4 HOH A 189 689 569 HOH HOH . D 4 HOH A 190 690 426 HOH HOH . D 4 HOH A 191 691 558 HOH HOH . D 4 HOH A 192 692 599 HOH HOH . D 4 HOH A 193 693 560 HOH HOH . D 4 HOH A 194 694 420 HOH HOH . D 4 HOH A 195 695 514 HOH HOH . D 4 HOH A 196 696 554 HOH HOH . D 4 HOH A 197 697 628 HOH HOH . D 4 HOH A 198 698 566 HOH HOH . D 4 HOH A 199 699 468 HOH HOH . D 4 HOH A 200 700 595 HOH HOH . D 4 HOH A 201 701 474 HOH HOH . D 4 HOH A 202 702 551 HOH HOH . D 4 HOH A 203 703 499 HOH HOH . D 4 HOH A 204 704 508 HOH HOH . D 4 HOH A 205 705 615 HOH HOH . D 4 HOH A 206 706 559 HOH HOH . D 4 HOH A 207 707 583 HOH HOH . D 4 HOH A 208 708 573 HOH HOH . D 4 HOH A 209 709 504 HOH HOH . D 4 HOH A 210 710 503 HOH HOH . D 4 HOH A 211 711 527 HOH HOH . D 4 HOH A 212 712 603 HOH HOH . D 4 HOH A 213 713 588 HOH HOH . D 4 HOH A 214 714 475 HOH HOH . D 4 HOH A 215 715 497 HOH HOH . D 4 HOH A 216 716 405 HOH HOH . D 4 HOH A 217 717 493 HOH HOH . D 4 HOH A 218 718 507 HOH HOH . D 4 HOH A 219 719 565 HOH HOH . D 4 HOH A 220 720 556 HOH HOH . D 4 HOH A 221 721 586 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5' NEC . . . B 2 18.442 -14.585 53.51 1 24.67 ? C5' NEC 401 A 1 HETATM 2 O O5' NEC . . . B 2 17.292 -15.149 53.991 1 22.35 ? O5' NEC 401 A 1 HETATM 3 N N5' NEC . . . B 2 18.544 -13.169 53.504 1 30.08 ? N5' NEC 401 A 1 HETATM 4 C C51 NEC . . . B 2 17.41 -12.412 53.962 1 30.52 ? C51 NEC 401 A 1 HETATM 5 C C52 NEC . . . B 2 16.857 -11.789 52.676 1 31.85 ? C52 NEC 401 A 1 HETATM 6 C C4' NEC . . . B 2 19.594 -15.435 53.083 1 25.48 ? C4' NEC 401 A 1 HETATM 7 O O4' NEC . . . B 2 19.919 -16.146 54.255 1 22.78 ? O4' NEC 401 A 1 HETATM 8 C C3' NEC . . . B 2 19.197 -16.49 52.081 1 27.83 ? C3' NEC 401 A 1 HETATM 9 O O3' NEC . . . B 2 19.198 -16.02 50.733 1 28.44 ? O3' NEC 401 A 1 HETATM 10 C C2' NEC . . . B 2 20.239 -17.574 52.397 1 29.4 ? C2' NEC 401 A 1 HETATM 11 O O2' NEC . . . B 2 21.482 -17.206 51.785 1 32.52 ? O2' NEC 401 A 1 HETATM 12 C C1' NEC . . . B 2 20.306 -17.488 53.955 1 24.06 ? C1' NEC 401 A 1 HETATM 13 N N9 NEC . . . B 2 19.281 -18.383 54.565 1 21.5 ? N9 NEC 401 A 1 HETATM 14 C C8 NEC . . . B 2 18.019 -18.089 55.062 1 20.81 ? C8 NEC 401 A 1 HETATM 15 N N7 NEC . . . B 2 17.438 -19.135 55.593 1 21.24 ? N7 NEC 401 A 1 HETATM 16 C C5 NEC . . . B 2 18.357 -20.162 55.432 1 20.14 ? C5 NEC 401 A 1 HETATM 17 C C6 NEC . . . B 2 18.336 -21.538 55.755 1 20.06 ? C6 NEC 401 A 1 HETATM 18 N N6 NEC . . . B 2 17.288 -22.164 56.323 1 20.03 ? N6 NEC 401 A 1 HETATM 19 N N1 NEC . . . B 2 19.458 -22.274 55.464 1 22.98 ? N1 NEC 401 A 1 HETATM 20 C C2 NEC . . . B 2 20.516 -21.698 54.849 1 21.19 ? C2 NEC 401 A 1 HETATM 21 N N3 NEC . . . B 2 20.642 -20.408 54.456 1 21.58 ? N3 NEC 401 A 1 HETATM 22 C C4 NEC . . . B 2 19.519 -19.705 54.814 1 21.33 ? C4 NEC 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #