data_6D28
#
_model_server_result.job_id            '_v2RluwsFPqslOVDyYPCwQ' 
_model_server_result.datetime_utc      '2024-11-01 05:39:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6D28 
#
_exptl.entry_id    6D28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-METHOXY-2-(2-METHOXYETHOXY)ETHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D28 
_cell.length_a            89.2 
_cell.length_b            99.18 
_cell.length_c            63.071 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O3' 
_chem_comp.formula_weight    134.174 
_chem_comp.id                M2M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-METHOXY-2-(2-METHOXYETHOXY)ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 M2M sing 218 n n 
C1 H11 M2M sing 219 n n 
C1 H12 M2M sing 220 n n 
C1 H13 M2M sing 221 n n 
O1 C2 M2M sing 222 n n 
C2 C3 M2M sing 223 n n 
C2 H21 M2M sing 224 n n 
C2 H22 M2M sing 225 n n 
C3 O2 M2M sing 226 n n 
C3 H31 M2M sing 227 n n 
C3 H32 M2M sing 228 n n 
O2 C4 M2M sing 229 n n 
C4 C5 M2M sing 230 n n 
C4 H41 M2M sing 231 n n 
C4 H42 M2M sing 232 n n 
C5 O3 M2M sing 233 n n 
C5 H51 M2M sing 234 n n 
C5 H52 M2M sing 235 n n 
O3 C6 M2M sing 236 n n 
C6 H61 M2M sing 237 n n 
C6 H62 M2M sing 238 n n 
C6 H63 M2M sing 239 n n 
#
_atom_sites.entry_id                     6D28 
_atom_sites.fract_transf_matrix[1][1]    0.011211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015855 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NEC A 1 401 338 NEC NEC . 
C 3 M2M A 1 402 401 M2M M2M . 
D 4 HOH A 1 501 513 HOH HOH . 
D 4 HOH A 2 502 515 HOH HOH . 
D 4 HOH A 3 503 466 HOH HOH . 
D 4 HOH A 4 504 590 HOH HOH . 
D 4 HOH A 5 505 581 HOH HOH . 
D 4 HOH A 6 506 610 HOH HOH . 
D 4 HOH A 7 507 545 HOH HOH . 
D 4 HOH A 8 508 454 HOH HOH . 
D 4 HOH A 9 509 596 HOH HOH . 
D 4 HOH A 10 510 597 HOH HOH . 
D 4 HOH A 11 511 605 HOH HOH . 
D 4 HOH A 12 512 532 HOH HOH . 
D 4 HOH A 13 513 620 HOH HOH . 
D 4 HOH A 14 514 519 HOH HOH . 
D 4 HOH A 15 515 402 HOH HOH . 
D 4 HOH A 16 516 459 HOH HOH . 
D 4 HOH A 17 517 473 HOH HOH . 
D 4 HOH A 18 518 457 HOH HOH . 
D 4 HOH A 19 519 563 HOH HOH . 
D 4 HOH A 20 520 604 HOH HOH . 
D 4 HOH A 21 521 423 HOH HOH . 
D 4 HOH A 22 522 627 HOH HOH . 
D 4 HOH A 23 523 446 HOH HOH . 
D 4 HOH A 24 524 406 HOH HOH . 
D 4 HOH A 25 525 488 HOH HOH . 
D 4 HOH A 26 526 621 HOH HOH . 
D 4 HOH A 27 527 411 HOH HOH . 
D 4 HOH A 28 528 448 HOH HOH . 
D 4 HOH A 29 529 548 HOH HOH . 
D 4 HOH A 30 530 434 HOH HOH . 
D 4 HOH A 31 531 453 HOH HOH . 
D 4 HOH A 32 532 481 HOH HOH . 
D 4 HOH A 33 533 449 HOH HOH . 
D 4 HOH A 34 534 521 HOH HOH . 
D 4 HOH A 35 535 562 HOH HOH . 
D 4 HOH A 36 536 528 HOH HOH . 
D 4 HOH A 37 537 433 HOH HOH . 
D 4 HOH A 38 538 452 HOH HOH . 
D 4 HOH A 39 539 524 HOH HOH . 
D 4 HOH A 40 540 518 HOH HOH . 
D 4 HOH A 41 541 415 HOH HOH . 
D 4 HOH A 42 542 403 HOH HOH . 
D 4 HOH A 43 543 601 HOH HOH . 
D 4 HOH A 44 544 600 HOH HOH . 
D 4 HOH A 45 545 530 HOH HOH . 
D 4 HOH A 46 546 442 HOH HOH . 
D 4 HOH A 47 547 404 HOH HOH . 
D 4 HOH A 48 548 419 HOH HOH . 
D 4 HOH A 49 549 409 HOH HOH . 
D 4 HOH A 50 550 469 HOH HOH . 
D 4 HOH A 51 551 416 HOH HOH . 
D 4 HOH A 52 552 467 HOH HOH . 
D 4 HOH A 53 553 430 HOH HOH . 
D 4 HOH A 54 554 451 HOH HOH . 
D 4 HOH A 55 555 418 HOH HOH . 
D 4 HOH A 56 556 412 HOH HOH . 
D 4 HOH A 57 557 460 HOH HOH . 
D 4 HOH A 58 558 455 HOH HOH . 
D 4 HOH A 59 559 606 HOH HOH . 
D 4 HOH A 60 560 461 HOH HOH . 
D 4 HOH A 61 561 537 HOH HOH . 
D 4 HOH A 62 562 441 HOH HOH . 
D 4 HOH A 63 563 414 HOH HOH . 
D 4 HOH A 64 564 549 HOH HOH . 
D 4 HOH A 65 565 579 HOH HOH . 
D 4 HOH A 66 566 482 HOH HOH . 
D 4 HOH A 67 567 427 HOH HOH . 
D 4 HOH A 68 568 487 HOH HOH . 
D 4 HOH A 69 569 436 HOH HOH . 
D 4 HOH A 70 570 624 HOH HOH . 
D 4 HOH A 71 571 410 HOH HOH . 
D 4 HOH A 72 572 443 HOH HOH . 
D 4 HOH A 73 573 589 HOH HOH . 
D 4 HOH A 74 574 424 HOH HOH . 
D 4 HOH A 75 575 421 HOH HOH . 
D 4 HOH A 76 576 428 HOH HOH . 
D 4 HOH A 77 577 584 HOH HOH . 
D 4 HOH A 78 578 582 HOH HOH . 
D 4 HOH A 79 579 486 HOH HOH . 
D 4 HOH A 80 580 422 HOH HOH . 
D 4 HOH A 81 581 407 HOH HOH . 
D 4 HOH A 82 582 408 HOH HOH . 
D 4 HOH A 83 583 561 HOH HOH . 
D 4 HOH A 84 584 445 HOH HOH . 
D 4 HOH A 85 585 478 HOH HOH . 
D 4 HOH A 86 586 574 HOH HOH . 
D 4 HOH A 87 587 450 HOH HOH . 
D 4 HOH A 88 588 477 HOH HOH . 
D 4 HOH A 89 589 483 HOH HOH . 
D 4 HOH A 90 590 437 HOH HOH . 
D 4 HOH A 91 591 471 HOH HOH . 
D 4 HOH A 92 592 547 HOH HOH . 
D 4 HOH A 93 593 501 HOH HOH . 
D 4 HOH A 94 594 425 HOH HOH . 
D 4 HOH A 95 595 510 HOH HOH . 
D 4 HOH A 96 596 626 HOH HOH . 
D 4 HOH A 97 597 616 HOH HOH . 
D 4 HOH A 98 598 564 HOH HOH . 
D 4 HOH A 99 599 417 HOH HOH . 
D 4 HOH A 100 600 479 HOH HOH . 
D 4 HOH A 101 601 438 HOH HOH . 
D 4 HOH A 102 602 598 HOH HOH . 
D 4 HOH A 103 603 614 HOH HOH . 
D 4 HOH A 104 604 593 HOH HOH . 
D 4 HOH A 105 605 525 HOH HOH . 
D 4 HOH A 106 606 623 HOH HOH . 
D 4 HOH A 107 607 413 HOH HOH . 
D 4 HOH A 108 608 439 HOH HOH . 
D 4 HOH A 109 609 447 HOH HOH . 
D 4 HOH A 110 610 535 HOH HOH . 
D 4 HOH A 111 611 536 HOH HOH . 
D 4 HOH A 112 612 531 HOH HOH . 
D 4 HOH A 113 613 440 HOH HOH . 
D 4 HOH A 114 614 534 HOH HOH . 
D 4 HOH A 115 615 429 HOH HOH . 
D 4 HOH A 116 616 522 HOH HOH . 
D 4 HOH A 117 617 456 HOH HOH . 
D 4 HOH A 118 618 496 HOH HOH . 
D 4 HOH A 119 619 431 HOH HOH . 
D 4 HOH A 120 620 555 HOH HOH . 
D 4 HOH A 121 621 492 HOH HOH . 
D 4 HOH A 122 622 607 HOH HOH . 
D 4 HOH A 123 623 476 HOH HOH . 
D 4 HOH A 124 624 576 HOH HOH . 
D 4 HOH A 125 625 509 HOH HOH . 
D 4 HOH A 126 626 538 HOH HOH . 
D 4 HOH A 127 627 516 HOH HOH . 
D 4 HOH A 128 628 550 HOH HOH . 
D 4 HOH A 129 629 526 HOH HOH . 
D 4 HOH A 130 630 571 HOH HOH . 
D 4 HOH A 131 631 592 HOH HOH . 
D 4 HOH A 132 632 619 HOH HOH . 
D 4 HOH A 133 633 511 HOH HOH . 
D 4 HOH A 134 634 472 HOH HOH . 
D 4 HOH A 135 635 484 HOH HOH . 
D 4 HOH A 136 636 529 HOH HOH . 
D 4 HOH A 137 637 520 HOH HOH . 
D 4 HOH A 138 638 462 HOH HOH . 
D 4 HOH A 139 639 544 HOH HOH . 
D 4 HOH A 140 640 541 HOH HOH . 
D 4 HOH A 141 641 585 HOH HOH . 
D 4 HOH A 142 642 435 HOH HOH . 
D 4 HOH A 143 643 512 HOH HOH . 
D 4 HOH A 144 644 587 HOH HOH . 
D 4 HOH A 145 645 463 HOH HOH . 
D 4 HOH A 146 646 543 HOH HOH . 
D 4 HOH A 147 647 470 HOH HOH . 
D 4 HOH A 148 648 485 HOH HOH . 
D 4 HOH A 149 649 542 HOH HOH . 
D 4 HOH A 150 650 533 HOH HOH . 
D 4 HOH A 151 651 523 HOH HOH . 
D 4 HOH A 152 652 540 HOH HOH . 
D 4 HOH A 153 653 498 HOH HOH . 
D 4 HOH A 154 654 480 HOH HOH . 
D 4 HOH A 155 655 432 HOH HOH . 
D 4 HOH A 156 656 622 HOH HOH . 
D 4 HOH A 157 657 612 HOH HOH . 
D 4 HOH A 158 658 611 HOH HOH . 
D 4 HOH A 159 659 506 HOH HOH . 
D 4 HOH A 160 660 489 HOH HOH . 
D 4 HOH A 161 661 491 HOH HOH . 
D 4 HOH A 162 662 575 HOH HOH . 
D 4 HOH A 163 663 577 HOH HOH . 
D 4 HOH A 164 664 572 HOH HOH . 
D 4 HOH A 165 665 505 HOH HOH . 
D 4 HOH A 166 666 465 HOH HOH . 
D 4 HOH A 167 667 625 HOH HOH . 
D 4 HOH A 168 668 568 HOH HOH . 
D 4 HOH A 169 669 552 HOH HOH . 
D 4 HOH A 170 670 580 HOH HOH . 
D 4 HOH A 171 671 502 HOH HOH . 
D 4 HOH A 172 672 608 HOH HOH . 
D 4 HOH A 173 673 567 HOH HOH . 
D 4 HOH A 174 674 444 HOH HOH . 
D 4 HOH A 175 675 594 HOH HOH . 
D 4 HOH A 176 676 618 HOH HOH . 
D 4 HOH A 177 677 613 HOH HOH . 
D 4 HOH A 178 678 458 HOH HOH . 
D 4 HOH A 179 679 500 HOH HOH . 
D 4 HOH A 180 680 557 HOH HOH . 
D 4 HOH A 181 681 517 HOH HOH . 
D 4 HOH A 182 682 495 HOH HOH . 
D 4 HOH A 183 683 553 HOH HOH . 
D 4 HOH A 184 684 494 HOH HOH . 
D 4 HOH A 185 685 464 HOH HOH . 
D 4 HOH A 186 686 617 HOH HOH . 
D 4 HOH A 187 687 578 HOH HOH . 
D 4 HOH A 188 688 539 HOH HOH . 
D 4 HOH A 189 689 569 HOH HOH . 
D 4 HOH A 190 690 426 HOH HOH . 
D 4 HOH A 191 691 558 HOH HOH . 
D 4 HOH A 192 692 599 HOH HOH . 
D 4 HOH A 193 693 560 HOH HOH . 
D 4 HOH A 194 694 420 HOH HOH . 
D 4 HOH A 195 695 514 HOH HOH . 
D 4 HOH A 196 696 554 HOH HOH . 
D 4 HOH A 197 697 628 HOH HOH . 
D 4 HOH A 198 698 566 HOH HOH . 
D 4 HOH A 199 699 468 HOH HOH . 
D 4 HOH A 200 700 595 HOH HOH . 
D 4 HOH A 201 701 474 HOH HOH . 
D 4 HOH A 202 702 551 HOH HOH . 
D 4 HOH A 203 703 499 HOH HOH . 
D 4 HOH A 204 704 508 HOH HOH . 
D 4 HOH A 205 705 615 HOH HOH . 
D 4 HOH A 206 706 559 HOH HOH . 
D 4 HOH A 207 707 583 HOH HOH . 
D 4 HOH A 208 708 573 HOH HOH . 
D 4 HOH A 209 709 504 HOH HOH . 
D 4 HOH A 210 710 503 HOH HOH . 
D 4 HOH A 211 711 527 HOH HOH . 
D 4 HOH A 212 712 603 HOH HOH . 
D 4 HOH A 213 713 588 HOH HOH . 
D 4 HOH A 214 714 475 HOH HOH . 
D 4 HOH A 215 715 497 HOH HOH . 
D 4 HOH A 216 716 405 HOH HOH . 
D 4 HOH A 217 717 493 HOH HOH . 
D 4 HOH A 218 718 507 HOH HOH . 
D 4 HOH A 219 719 565 HOH HOH . 
D 4 HOH A 220 720 556 HOH HOH . 
D 4 HOH A 221 721 586 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 M2M . . . C 3 9.299 5.173 61.573 1 56.85 ? C1 M2M 402 A 1 
HETATM 2 O O1 M2M . . . C 3 10.472 4.413 61.932 1 56.11 ? O1 M2M 402 A 1 
HETATM 3 C C2 M2M . . . C 3 10.167 3.363 62.857 1 52.73 ? C2 M2M 402 A 1 
HETATM 4 C C3 M2M . . . C 3 11.193 3.501 63.947 1 49.83 ? C3 M2M 402 A 1 
HETATM 5 O O2 M2M . . . C 3 12.319 2.714 63.593 1 50 ? O2 M2M 402 A 1 
HETATM 6 C C4 M2M . . . C 3 13.107 2.632 64.694 1 50.56 ? C4 M2M 402 A 1 
HETATM 7 C C5 M2M . . . C 3 14.42 2.433 64.109 1 50.35 ? C5 M2M 402 A 1 
HETATM 8 O O3 M2M . . . C 3 14.368 1.26 63.43 1 49.31 ? O3 M2M 402 A 1 
HETATM 9 C C6 M2M . . . C 3 15.071 1.48 62.2 1 54.44 ? C6 M2M 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           9 
#