data_6D2I
#
_model_server_result.job_id            Bu3lXdVZwNlAgiDHk2gehw 
_model_server_result.datetime_utc      '2024-11-24 15:29:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d2i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    6D2I 
#
_exptl.entry_id    6D2I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.432 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D2I 
_cell.length_a            63.905 
_cell.length_b            91.131 
_cell.length_c            113.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D2I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 81 A CYS 616 1_555 A SG CYS 83 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 81 B CYS 616 1_555 B SG CYS 83 B CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C19 H23 N7 O2' 
_chem_comp.formula_weight    381.432 
_chem_comp.id                35R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 35R doub 1 n y 
C17 C16 35R sing 2 n y 
C18 C19 35R sing 3 n y 
C27 C26 35R sing 4 n n 
C27 N21 35R sing 5 n n 
C26 O25 35R sing 6 n n 
C16 N15 35R sing 7 n y 
C16 C29 35R doub 8 n y 
C19 C20 35R sing 9 n n 
C19 C28 35R doub 10 n y 
C20 N21 35R sing 11 n n 
N21 C23 35R sing 12 n n 
N15 C14 35R sing 13 n y 
C29 C28 35R sing 14 n y 
C29 N30 35R sing 15 n y 
O25 C24 35R sing 16 n n 
C14 N30 35R doub 17 n y 
C14 C13 35R sing 18 n n 
N12 C13 35R doub 19 n y 
N12 N10 35R sing 20 n y 
C23 C24 35R sing 21 n n 
C13 C8 35R sing 22 n y 
N10 C9 35R sing 23 n y 
C8 C9 35R doub 24 n y 
C8 N7 35R sing 25 n n 
N7 C2 35R sing 26 n n 
C5 C4 35R sing 27 n n 
C5 C6 35R sing 28 n n 
C4 N3 35R sing 29 n n 
C4 C6 35R sing 30 n n 
C2 O1 35R doub 31 n n 
C2 N3 35R sing 32 n n 
N3 H1 35R sing 33 n n 
C4 H2 35R sing 34 n n 
C5 H3 35R sing 35 n n 
C5 H4 35R sing 36 n n 
C6 H5 35R sing 37 n n 
C6 H6 35R sing 38 n n 
N7 H7 35R sing 39 n n 
C9 H8 35R sing 40 n n 
N10 H9 35R sing 41 n n 
N15 H10 35R sing 42 n n 
C17 H11 35R sing 43 n n 
C18 H12 35R sing 44 n n 
C20 H13 35R sing 45 n n 
C20 H14 35R sing 46 n n 
C23 H16 35R sing 47 n n 
C23 H17 35R sing 48 n n 
C24 H18 35R sing 49 n n 
C24 H19 35R sing 50 n n 
C26 H20 35R sing 51 n n 
C26 H21 35R sing 52 n n 
C27 H22 35R sing 53 n n 
C27 H23 35R sing 54 n n 
C28 H24 35R sing 55 n n 
#
_atom_sites.entry_id                     6D2I 
_atom_sites.fract_transf_matrix[1][1]    0.015648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 35R A 1 901 999 35R L0I . 
D 2 35R B 1 901 999 35R L0I . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 35R . . . D 2 14.929 14.148 126.771 1 62.54 ? O1 35R 901 B 1 
HETATM 2 C C2 35R . . . D 2 15.654 13.212 126.884 1 55.45 ? C2 35R 901 B 1 
HETATM 3 N N3 35R . . . D 2 16.632 12.898 125.839 1 70.17 ? N3 35R 901 B 1 
HETATM 4 C C4 35R . . . D 2 17.508 11.733 126.015 1 96.03 ? C4 35R 901 B 1 
HETATM 5 C C5 35R . . . D 2 18.909 11.858 125.393 1 112.01 ? C5 35R 901 B 1 
HETATM 6 C C6 35R . . . D 2 18.742 11.954 126.91 1 110.97 ? C6 35R 901 B 1 
HETATM 7 N N7 35R . . . D 2 15.601 12.337 128.058 1 51.4 ? N7 35R 901 B 1 
HETATM 8 C C8 35R . . . D 2 14.68 12.522 129.183 1 56.23 ? C8 35R 901 B 1 
HETATM 9 C C9 35R . . . D 2 13.592 13.354 129.265 1 51.14 ? C9 35R 901 B 1 
HETATM 10 N N10 35R . . . D 2 13.009 13.177 130.538 1 51.61 ? N10 35R 901 B 1 
HETATM 11 N N12 35R . . . D 2 13.77 12.217 131.237 1 62.56 ? N12 35R 901 B 1 
HETATM 12 C C13 35R . . . D 2 14.779 11.797 130.411 1 54.96 ? C13 35R 901 B 1 
HETATM 13 C C14 35R . . . D 2 15.89 10.778 130.743 1 58.2 ? C14 35R 901 B 1 
HETATM 14 N N15 35R . . . D 2 16.992 10.531 129.967 1 52.99 ? N15 35R 901 B 1 
HETATM 15 C C16 35R . . . D 2 17.742 9.47 130.801 1 53.97 ? C16 35R 901 B 1 
HETATM 16 C C17 35R . . . D 2 18.932 8.747 130.644 1 54.61 ? C17 35R 901 B 1 
HETATM 17 C C18 35R . . . D 2 19.315 7.83 131.66 1 56.94 ? C18 35R 901 B 1 
HETATM 18 C C19 35R . . . D 2 18.517 7.616 132.812 1 64.77 ? C19 35R 901 B 1 
HETATM 19 C C20 35R . . . D 2 18.938 6.619 133.936 1 75.33 ? C20 35R 901 B 1 
HETATM 20 N N21 35R . . . D 2 19.119 5.231 133.511 1 86.94 ? N21 35R 901 B 1 
HETATM 21 C C23 35R . . . D 2 18.96 4.384 134.672 1 99.78 ? C23 35R 901 B 1 
HETATM 22 C C24 35R . . . D 2 19.065 2.913 134.337 1 91.56 ? C24 35R 901 B 1 
HETATM 23 O O25 35R . . . D 2 19.263 2.672 132.988 1 86.21 ? O25 35R 901 B 1 
HETATM 24 C C26 35R . . . D 2 18.261 3.284 132.203 1 82.14 ? C26 35R 901 B 1 
HETATM 25 C C27 35R . . . D 2 18.137 4.831 132.487 1 84.36 ? C27 35R 901 B 1 
HETATM 26 C C28 35R . . . D 2 17.34 8.356 132.952 1 55.35 ? C28 35R 901 B 1 
HETATM 27 C C29 35R . . . D 2 16.953 9.253 131.98 1 54.36 ? C29 35R 901 B 1 
HETATM 28 N N30 35R . . . D 2 15.977 10.054 131.789 1 64.08 ? N30 35R 901 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#