data_6D2I # _model_server_result.job_id YwXywfUyXHmu4-nDNk1HFA _model_server_result.datetime_utc '2024-11-13 05:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 6D2I # _exptl.entry_id 6D2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D2I _cell.length_a 63.905 _cell.length_b 91.131 _cell.length_c 113.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 616 1_555 A SG CYS 83 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 81 B CYS 616 1_555 B SG CYS 83 B CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C19 H23 N7 O2' _chem_comp.formula_weight 381.432 _chem_comp.id 35R _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 35R doub 1 n y C17 C16 35R sing 2 n y C18 C19 35R sing 3 n y C27 C26 35R sing 4 n n C27 N21 35R sing 5 n n C26 O25 35R sing 6 n n C16 N15 35R sing 7 n y C16 C29 35R doub 8 n y C19 C20 35R sing 9 n n C19 C28 35R doub 10 n y C20 N21 35R sing 11 n n N21 C23 35R sing 12 n n N15 C14 35R sing 13 n y C29 C28 35R sing 14 n y C29 N30 35R sing 15 n y O25 C24 35R sing 16 n n C14 N30 35R doub 17 n y C14 C13 35R sing 18 n n N12 C13 35R doub 19 n y N12 N10 35R sing 20 n y C23 C24 35R sing 21 n n C13 C8 35R sing 22 n y N10 C9 35R sing 23 n y C8 C9 35R doub 24 n y C8 N7 35R sing 25 n n N7 C2 35R sing 26 n n C5 C4 35R sing 27 n n C5 C6 35R sing 28 n n C4 N3 35R sing 29 n n C4 C6 35R sing 30 n n C2 O1 35R doub 31 n n C2 N3 35R sing 32 n n N3 H1 35R sing 33 n n C4 H2 35R sing 34 n n C5 H3 35R sing 35 n n C5 H4 35R sing 36 n n C6 H5 35R sing 37 n n C6 H6 35R sing 38 n n N7 H7 35R sing 39 n n C9 H8 35R sing 40 n n N10 H9 35R sing 41 n n N15 H10 35R sing 42 n n C17 H11 35R sing 43 n n C18 H12 35R sing 44 n n C20 H13 35R sing 45 n n C20 H14 35R sing 46 n n C23 H16 35R sing 47 n n C23 H17 35R sing 48 n n C24 H18 35R sing 49 n n C24 H19 35R sing 50 n n C26 H20 35R sing 51 n n C26 H21 35R sing 52 n n C27 H22 35R sing 53 n n C27 H23 35R sing 54 n n C28 H24 35R sing 55 n n # _atom_sites.entry_id 6D2I _atom_sites.fract_transf_matrix[1][1] 0.015648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 35R A 1 901 999 35R L0I . D 2 35R B 1 901 999 35R L0I . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 35R . . . D 2 14.929 14.148 126.771 1 62.54 ? O1 35R 901 B 1 HETATM 2 C C2 35R . . . D 2 15.654 13.212 126.884 1 55.45 ? C2 35R 901 B 1 HETATM 3 N N3 35R . . . D 2 16.632 12.898 125.839 1 70.17 ? N3 35R 901 B 1 HETATM 4 C C4 35R . . . D 2 17.508 11.733 126.015 1 96.03 ? C4 35R 901 B 1 HETATM 5 C C5 35R . . . D 2 18.909 11.858 125.393 1 112.01 ? C5 35R 901 B 1 HETATM 6 C C6 35R . . . D 2 18.742 11.954 126.91 1 110.97 ? C6 35R 901 B 1 HETATM 7 N N7 35R . . . D 2 15.601 12.337 128.058 1 51.4 ? N7 35R 901 B 1 HETATM 8 C C8 35R . . . D 2 14.68 12.522 129.183 1 56.23 ? C8 35R 901 B 1 HETATM 9 C C9 35R . . . D 2 13.592 13.354 129.265 1 51.14 ? C9 35R 901 B 1 HETATM 10 N N10 35R . . . D 2 13.009 13.177 130.538 1 51.61 ? N10 35R 901 B 1 HETATM 11 N N12 35R . . . D 2 13.77 12.217 131.237 1 62.56 ? N12 35R 901 B 1 HETATM 12 C C13 35R . . . D 2 14.779 11.797 130.411 1 54.96 ? C13 35R 901 B 1 HETATM 13 C C14 35R . . . D 2 15.89 10.778 130.743 1 58.2 ? C14 35R 901 B 1 HETATM 14 N N15 35R . . . D 2 16.992 10.531 129.967 1 52.99 ? N15 35R 901 B 1 HETATM 15 C C16 35R . . . D 2 17.742 9.47 130.801 1 53.97 ? C16 35R 901 B 1 HETATM 16 C C17 35R . . . D 2 18.932 8.747 130.644 1 54.61 ? C17 35R 901 B 1 HETATM 17 C C18 35R . . . D 2 19.315 7.83 131.66 1 56.94 ? C18 35R 901 B 1 HETATM 18 C C19 35R . . . D 2 18.517 7.616 132.812 1 64.77 ? C19 35R 901 B 1 HETATM 19 C C20 35R . . . D 2 18.938 6.619 133.936 1 75.33 ? C20 35R 901 B 1 HETATM 20 N N21 35R . . . D 2 19.119 5.231 133.511 1 86.94 ? N21 35R 901 B 1 HETATM 21 C C23 35R . . . D 2 18.96 4.384 134.672 1 99.78 ? C23 35R 901 B 1 HETATM 22 C C24 35R . . . D 2 19.065 2.913 134.337 1 91.56 ? C24 35R 901 B 1 HETATM 23 O O25 35R . . . D 2 19.263 2.672 132.988 1 86.21 ? O25 35R 901 B 1 HETATM 24 C C26 35R . . . D 2 18.261 3.284 132.203 1 82.14 ? C26 35R 901 B 1 HETATM 25 C C27 35R . . . D 2 18.137 4.831 132.487 1 84.36 ? C27 35R 901 B 1 HETATM 26 C C28 35R . . . D 2 17.34 8.356 132.952 1 55.35 ? C28 35R 901 B 1 HETATM 27 C C29 35R . . . D 2 16.953 9.253 131.98 1 54.36 ? C29 35R 901 B 1 HETATM 28 N N30 35R . . . D 2 15.977 10.054 131.789 1 64.08 ? N30 35R 901 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #