data_6D2M
#
_model_server_result.job_id            shwNfU2PaGi3H8SbmNTRkg 
_model_server_result.datetime_utc      '2025-09-30 17:41:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d2m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6D2M 
#
_exptl.entry_id    6D2M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D2M 
_cell.length_a            71.614 
_cell.length_b            77.533 
_cell.length_c            87.019 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D2M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 71.614 0 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 71.614 0 87.019 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 87.019 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 40 A CYS 42 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 98 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc3 A SG CYS 99 A CYS 101 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N1 IMD . A IMD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     6D2M 
_atom_sites.fract_transf_matrix[1][1]    0.013964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 3 IMD A 1 302 302 IMD IMD . 
D 3 IMD A 1 303 303 IMD IMD . 
E 4 HOH A 1 401 42 HOH HOH . 
E 4 HOH A 2 402 65 HOH HOH . 
E 4 HOH A 3 403 51 HOH HOH . 
E 4 HOH A 4 404 22 HOH HOH . 
E 4 HOH A 5 405 59 HOH HOH . 
E 4 HOH A 6 406 71 HOH HOH . 
E 4 HOH A 7 407 68 HOH HOH . 
E 4 HOH A 8 408 15 HOH HOH . 
E 4 HOH A 9 409 41 HOH HOH . 
E 4 HOH A 10 410 19 HOH HOH . 
E 4 HOH A 11 411 23 HOH HOH . 
E 4 HOH A 12 412 11 HOH HOH . 
E 4 HOH A 13 413 33 HOH HOH . 
E 4 HOH A 14 414 56 HOH HOH . 
E 4 HOH A 15 415 5 HOH HOH . 
E 4 HOH A 16 416 66 HOH HOH . 
E 4 HOH A 17 417 6 HOH HOH . 
E 4 HOH A 18 418 30 HOH HOH . 
E 4 HOH A 19 419 38 HOH HOH . 
E 4 HOH A 20 420 9 HOH HOH . 
E 4 HOH A 21 421 37 HOH HOH . 
E 4 HOH A 22 422 35 HOH HOH . 
E 4 HOH A 23 423 48 HOH HOH . 
E 4 HOH A 24 424 70 HOH HOH . 
E 4 HOH A 25 425 21 HOH HOH . 
E 4 HOH A 26 426 44 HOH HOH . 
E 4 HOH A 27 427 7 HOH HOH . 
E 4 HOH A 28 428 24 HOH HOH . 
E 4 HOH A 29 429 14 HOH HOH . 
E 4 HOH A 30 430 32 HOH HOH . 
E 4 HOH A 31 431 3 HOH HOH . 
E 4 HOH A 32 432 29 HOH HOH . 
E 4 HOH A 33 433 36 HOH HOH . 
E 4 HOH A 34 434 49 HOH HOH . 
E 4 HOH A 35 435 53 HOH HOH . 
E 4 HOH A 36 436 47 HOH HOH . 
E 4 HOH A 37 437 34 HOH HOH . 
E 4 HOH A 38 438 52 HOH HOH . 
E 4 HOH A 39 439 26 HOH HOH . 
E 4 HOH A 40 440 27 HOH HOH . 
E 4 HOH A 41 441 40 HOH HOH . 
E 4 HOH A 42 442 60 HOH HOH . 
E 4 HOH A 43 443 20 HOH HOH . 
E 4 HOH A 44 444 69 HOH HOH . 
E 4 HOH A 45 445 54 HOH HOH . 
E 4 HOH A 46 446 10 HOH HOH . 
E 4 HOH A 47 447 12 HOH HOH . 
E 4 HOH A 48 448 17 HOH HOH . 
E 4 HOH A 49 449 39 HOH HOH . 
E 4 HOH A 50 450 13 HOH HOH . 
E 4 HOH A 51 451 18 HOH HOH . 
E 4 HOH A 52 452 67 HOH HOH . 
E 4 HOH A 53 453 1 HOH HOH . 
E 4 HOH A 54 454 57 HOH HOH . 
E 4 HOH A 55 455 25 HOH HOH . 
E 4 HOH A 56 456 50 HOH HOH . 
E 4 HOH A 57 457 61 HOH HOH . 
E 4 HOH A 58 458 58 HOH HOH . 
E 4 HOH A 59 459 16 HOH HOH . 
E 4 HOH A 60 460 31 HOH HOH . 
E 4 HOH A 61 461 63 HOH HOH . 
E 4 HOH A 62 462 62 HOH HOH . 
E 4 HOH A 63 463 43 HOH HOH . 
E 4 HOH A 64 464 55 HOH HOH . 
E 4 HOH A 65 465 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . C 3 27.567 -9.373 26.504 1 70.19 ? N1 IMD 302 A 1 
HETATM 2 C C2 IMD . . . C 3 27.879 -10.591 26.089 1 73.42 ? C2 IMD 302 A 1 
HETATM 3 N N3 IMD . . . C 3 28.585 -11.225 27.021 1 74.42 ? N3 IMD 302 A 1 
HETATM 4 C C4 IMD . . . C 3 28.741 -10.407 28.081 1 67.96 ? C4 IMD 302 A 1 
HETATM 5 C C5 IMD . . . C 3 28.081 -9.217 27.75 1 70.23 ? C5 IMD 302 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#