data_6D2P # _model_server_result.job_id JsqaOwzZA3_aHTjWP7Psaw _model_server_result.datetime_utc '2024-12-31 10:08:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 6D2P # _exptl.entry_id 6D2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D2P _cell.length_a 134.3 _cell.length_b 66.636 _cell.length_c 76.518 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 C CYS 7 1_555 A SG CYS 160 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 17 C CYS 15 1_555 A SG CYS 153 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 53 C CYS 51 1_555 A SG CYS 90 C CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 101 C CYS 99 1_555 A SG CYS 107 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 145 H CYS 145 1_555 B SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 136 L CYS 137 1_555 C SG CYS 195 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6D2P _atom_sites.fract_transf_matrix[1][1] 0.007446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL C 1 201 1 GOL GOL . E 4 GOL C 1 202 2 GOL GOL . F 4 GOL C 1 203 5 GOL GOL . G 4 GOL H 1 301 3 GOL GOL . H 4 GOL H 1 302 4 GOL GOL . I 5 HOH C 1 301 55 HOH HOH . I 5 HOH C 2 302 35 HOH HOH . I 5 HOH C 3 303 11 HOH HOH . I 5 HOH C 4 304 26 HOH HOH . I 5 HOH C 5 305 4 HOH HOH . I 5 HOH C 6 306 6 HOH HOH . I 5 HOH C 7 307 20 HOH HOH . I 5 HOH C 8 308 114 HOH HOH . I 5 HOH C 9 309 48 HOH HOH . I 5 HOH C 10 310 32 HOH HOH . I 5 HOH C 11 311 94 HOH HOH . I 5 HOH C 12 312 34 HOH HOH . I 5 HOH C 13 313 113 HOH HOH . I 5 HOH C 14 314 25 HOH HOH . I 5 HOH C 15 315 69 HOH HOH . I 5 HOH C 16 316 5 HOH HOH . I 5 HOH C 17 317 65 HOH HOH . I 5 HOH C 18 318 61 HOH HOH . I 5 HOH C 19 319 46 HOH HOH . I 5 HOH C 20 320 1 HOH HOH . I 5 HOH C 21 321 36 HOH HOH . I 5 HOH C 22 322 78 HOH HOH . I 5 HOH C 23 323 91 HOH HOH . I 5 HOH C 24 324 63 HOH HOH . I 5 HOH C 25 325 72 HOH HOH . I 5 HOH C 26 326 88 HOH HOH . I 5 HOH C 27 327 56 HOH HOH . I 5 HOH C 28 328 23 HOH HOH . I 5 HOH C 29 329 108 HOH HOH . I 5 HOH C 30 330 57 HOH HOH . I 5 HOH C 31 331 110 HOH HOH . I 5 HOH C 32 332 99 HOH HOH . I 5 HOH C 33 333 71 HOH HOH . I 5 HOH C 34 334 84 HOH HOH . I 5 HOH C 35 335 45 HOH HOH . I 5 HOH C 36 336 102 HOH HOH . I 5 HOH C 37 337 97 HOH HOH . I 5 HOH C 38 338 73 HOH HOH . I 5 HOH C 39 339 60 HOH HOH . I 5 HOH C 40 340 107 HOH HOH . I 5 HOH C 41 341 109 HOH HOH . I 5 HOH C 42 342 76 HOH HOH . J 5 HOH H 1 401 103 HOH HOH . J 5 HOH H 2 402 44 HOH HOH . J 5 HOH H 3 403 92 HOH HOH . J 5 HOH H 4 404 19 HOH HOH . J 5 HOH H 5 405 42 HOH HOH . J 5 HOH H 6 406 62 HOH HOH . J 5 HOH H 7 407 29 HOH HOH . J 5 HOH H 8 408 22 HOH HOH . J 5 HOH H 9 409 70 HOH HOH . J 5 HOH H 10 410 3 HOH HOH . J 5 HOH H 11 411 98 HOH HOH . J 5 HOH H 12 412 40 HOH HOH . J 5 HOH H 13 413 18 HOH HOH . J 5 HOH H 14 414 64 HOH HOH . J 5 HOH H 15 415 8 HOH HOH . J 5 HOH H 16 416 28 HOH HOH . J 5 HOH H 17 417 30 HOH HOH . J 5 HOH H 18 418 52 HOH HOH . J 5 HOH H 19 419 74 HOH HOH . J 5 HOH H 20 420 24 HOH HOH . J 5 HOH H 21 421 43 HOH HOH . J 5 HOH H 22 422 7 HOH HOH . J 5 HOH H 23 423 27 HOH HOH . J 5 HOH H 24 424 37 HOH HOH . J 5 HOH H 25 425 81 HOH HOH . J 5 HOH H 26 426 79 HOH HOH . J 5 HOH H 27 427 93 HOH HOH . J 5 HOH H 28 428 59 HOH HOH . J 5 HOH H 29 429 101 HOH HOH . J 5 HOH H 30 430 16 HOH HOH . J 5 HOH H 31 431 33 HOH HOH . J 5 HOH H 32 432 115 HOH HOH . J 5 HOH H 33 433 77 HOH HOH . J 5 HOH H 34 434 10 HOH HOH . J 5 HOH H 35 435 21 HOH HOH . J 5 HOH H 36 436 50 HOH HOH . J 5 HOH H 37 437 12 HOH HOH . J 5 HOH H 38 438 13 HOH HOH . J 5 HOH H 39 439 111 HOH HOH . J 5 HOH H 40 440 112 HOH HOH . J 5 HOH H 41 441 9 HOH HOH . J 5 HOH H 42 442 75 HOH HOH . J 5 HOH H 43 443 38 HOH HOH . J 5 HOH H 44 444 82 HOH HOH . J 5 HOH H 45 445 118 HOH HOH . J 5 HOH H 46 446 104 HOH HOH . J 5 HOH H 47 447 53 HOH HOH . J 5 HOH H 48 448 83 HOH HOH . J 5 HOH H 49 449 68 HOH HOH . J 5 HOH H 50 450 87 HOH HOH . K 5 HOH L 1 301 39 HOH HOH . K 5 HOH L 2 302 15 HOH HOH . K 5 HOH L 3 303 17 HOH HOH . K 5 HOH L 4 304 31 HOH HOH . K 5 HOH L 5 305 85 HOH HOH . K 5 HOH L 6 306 66 HOH HOH . K 5 HOH L 7 307 2 HOH HOH . K 5 HOH L 8 308 95 HOH HOH . K 5 HOH L 9 309 51 HOH HOH . K 5 HOH L 10 310 89 HOH HOH . K 5 HOH L 11 311 67 HOH HOH . K 5 HOH L 12 312 47 HOH HOH . K 5 HOH L 13 313 80 HOH HOH . K 5 HOH L 14 314 116 HOH HOH . K 5 HOH L 15 315 106 HOH HOH . K 5 HOH L 16 316 86 HOH HOH . K 5 HOH L 17 317 105 HOH HOH . K 5 HOH L 18 318 49 HOH HOH . K 5 HOH L 19 319 90 HOH HOH . K 5 HOH L 20 320 117 HOH HOH . K 5 HOH L 21 321 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -20.508 17.698 3.537 1 44.37 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . F 4 -21.142 16.535 4.025 1 33.96 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . F 4 -19.645 18.332 4.623 1 40.54 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . F 4 -18.32 18.456 4.155 1 33.66 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . F 4 -20.189 19.706 5.002 1 32.43 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . F 4 -21.557 19.599 5.332 1 35.66 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #