data_6D2S # _model_server_result.job_id oZrKFQmBEnd01VWAZSRIZw _model_server_result.datetime_utc '2024-11-19 19:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 6D2S # _exptl.entry_id 6D2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D2S _cell.length_a 74.999 _cell.length_b 81.724 _cell.length_c 95.365 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 9 A ASP 160 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A OD2 ASP 9 A ASP 160 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 A OD1 ASP 9 A ASP 160 1_555 B CA CA . A CA 501 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OD2 ASP 9 A ASP 160 1_555 B CA CA . A CA 501 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 A OD1 ASP 13 A ASP 164 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 A OD2 ASP 13 A ASP 164 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc7 A OD1 ASP 13 A ASP 164 1_555 B CA CA . A CA 501 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc8 A OD2 ASP 13 A ASP 164 1_555 B CA CA . A CA 501 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc9 A OD1 ASN 15 A ASN 166 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc10 A OD2 ASP 20 A ASP 171 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc11 A O SER 199 A SER 350 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc12 A O ALA 248 A ALA 399 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc13 A OD2 ASP 250 A ASP 401 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc14 A O LEU 252 A LEU 403 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc15 C CA CA . A CA 502 1_555 I O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc16 C CA CA . A CA 502 1_555 I O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc17 C CA CA . A CA 502 1_555 I O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc18 C CA CA . A CA 502 1_555 I O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc19 F NA NA . A NA 505 1_555 I O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc20 F NA NA . A NA 505 1_555 I O HOH . A HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc21 G NA NA . A NA 506 1_555 I O HOH . A HOH 619 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc22 G NA NA . A NA 506 1_555 I O HOH . A HOH 638 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc23 G NA NA . A NA 506 1_555 I O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc24 G NA NA . A NA 506 1_555 I O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 G NA NA . A NA 506 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6D2S _atom_sites.fract_transf_matrix[1][1] 0.013334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 2 CA A 1 502 2 CA CA . D 3 CL A 1 503 1 CL CL . E 3 CL A 1 504 2 CL CL . F 4 NA A 1 505 1 NA NA . G 4 NA A 1 506 2 NA NA . H 5 EDO A 1 507 1 EDO EDO . I 6 HOH A 1 601 97 HOH HOH . I 6 HOH A 2 602 51 HOH HOH . I 6 HOH A 3 603 50 HOH HOH . I 6 HOH A 4 604 83 HOH HOH . I 6 HOH A 5 605 107 HOH HOH . I 6 HOH A 6 606 140 HOH HOH . I 6 HOH A 7 607 109 HOH HOH . I 6 HOH A 8 608 6 HOH HOH . I 6 HOH A 9 609 156 HOH HOH . I 6 HOH A 10 610 151 HOH HOH . I 6 HOH A 11 611 88 HOH HOH . I 6 HOH A 12 612 80 HOH HOH . I 6 HOH A 13 613 23 HOH HOH . I 6 HOH A 14 614 14 HOH HOH . I 6 HOH A 15 615 92 HOH HOH . I 6 HOH A 16 616 34 HOH HOH . I 6 HOH A 17 617 175 HOH HOH . I 6 HOH A 18 618 2 HOH HOH . I 6 HOH A 19 619 45 HOH HOH . I 6 HOH A 20 620 141 HOH HOH . I 6 HOH A 21 621 98 HOH HOH . I 6 HOH A 22 622 72 HOH HOH . I 6 HOH A 23 623 38 HOH HOH . I 6 HOH A 24 624 91 HOH HOH . I 6 HOH A 25 625 15 HOH HOH . I 6 HOH A 26 626 53 HOH HOH . I 6 HOH A 27 627 146 HOH HOH . I 6 HOH A 28 628 33 HOH HOH . I 6 HOH A 29 629 70 HOH HOH . I 6 HOH A 30 630 1 HOH HOH . I 6 HOH A 31 631 35 HOH HOH . I 6 HOH A 32 632 176 HOH HOH . I 6 HOH A 33 633 64 HOH HOH . I 6 HOH A 34 634 126 HOH HOH . I 6 HOH A 35 635 20 HOH HOH . I 6 HOH A 36 636 61 HOH HOH . I 6 HOH A 37 637 47 HOH HOH . I 6 HOH A 38 638 124 HOH HOH . I 6 HOH A 39 639 65 HOH HOH . I 6 HOH A 40 640 3 HOH HOH . I 6 HOH A 41 641 7 HOH HOH . I 6 HOH A 42 642 41 HOH HOH . I 6 HOH A 43 643 46 HOH HOH . I 6 HOH A 44 644 89 HOH HOH . I 6 HOH A 45 645 90 HOH HOH . I 6 HOH A 46 646 121 HOH HOH . I 6 HOH A 47 647 44 HOH HOH . I 6 HOH A 48 648 168 HOH HOH . I 6 HOH A 49 649 148 HOH HOH . I 6 HOH A 50 650 49 HOH HOH . I 6 HOH A 51 651 95 HOH HOH . I 6 HOH A 52 652 160 HOH HOH . I 6 HOH A 53 653 29 HOH HOH . I 6 HOH A 54 654 152 HOH HOH . I 6 HOH A 55 655 145 HOH HOH . I 6 HOH A 56 656 5 HOH HOH . I 6 HOH A 57 657 37 HOH HOH . I 6 HOH A 58 658 130 HOH HOH . I 6 HOH A 59 659 59 HOH HOH . I 6 HOH A 60 660 157 HOH HOH . I 6 HOH A 61 661 36 HOH HOH . I 6 HOH A 62 662 26 HOH HOH . I 6 HOH A 63 663 113 HOH HOH . I 6 HOH A 64 664 105 HOH HOH . I 6 HOH A 65 665 106 HOH HOH . I 6 HOH A 66 666 76 HOH HOH . I 6 HOH A 67 667 8 HOH HOH . I 6 HOH A 68 668 21 HOH HOH . I 6 HOH A 69 669 25 HOH HOH . I 6 HOH A 70 670 10 HOH HOH . I 6 HOH A 71 671 24 HOH HOH . I 6 HOH A 72 672 129 HOH HOH . I 6 HOH A 73 673 58 HOH HOH . I 6 HOH A 74 674 108 HOH HOH . I 6 HOH A 75 675 119 HOH HOH . I 6 HOH A 76 676 12 HOH HOH . I 6 HOH A 77 677 82 HOH HOH . I 6 HOH A 78 678 125 HOH HOH . I 6 HOH A 79 679 165 HOH HOH . I 6 HOH A 80 680 19 HOH HOH . I 6 HOH A 81 681 13 HOH HOH . I 6 HOH A 82 682 56 HOH HOH . I 6 HOH A 83 683 40 HOH HOH . I 6 HOH A 84 684 161 HOH HOH . I 6 HOH A 85 685 22 HOH HOH . I 6 HOH A 86 686 173 HOH HOH . I 6 HOH A 87 687 117 HOH HOH . I 6 HOH A 88 688 174 HOH HOH . I 6 HOH A 89 689 30 HOH HOH . I 6 HOH A 90 690 147 HOH HOH . I 6 HOH A 91 691 103 HOH HOH . I 6 HOH A 92 692 68 HOH HOH . I 6 HOH A 93 693 63 HOH HOH . I 6 HOH A 94 694 116 HOH HOH . I 6 HOH A 95 695 112 HOH HOH . I 6 HOH A 96 696 127 HOH HOH . I 6 HOH A 97 697 84 HOH HOH . I 6 HOH A 98 698 18 HOH HOH . I 6 HOH A 99 699 102 HOH HOH . I 6 HOH A 100 700 134 HOH HOH . I 6 HOH A 101 701 67 HOH HOH . I 6 HOH A 102 702 136 HOH HOH . I 6 HOH A 103 703 172 HOH HOH . I 6 HOH A 104 704 123 HOH HOH . I 6 HOH A 105 705 9 HOH HOH . I 6 HOH A 106 706 43 HOH HOH . I 6 HOH A 107 707 96 HOH HOH . I 6 HOH A 108 708 66 HOH HOH . I 6 HOH A 109 709 16 HOH HOH . I 6 HOH A 110 710 164 HOH HOH . I 6 HOH A 111 711 11 HOH HOH . I 6 HOH A 112 712 54 HOH HOH . I 6 HOH A 113 713 74 HOH HOH . I 6 HOH A 114 714 171 HOH HOH . I 6 HOH A 115 715 155 HOH HOH . I 6 HOH A 116 716 135 HOH HOH . I 6 HOH A 117 717 57 HOH HOH . I 6 HOH A 118 718 60 HOH HOH . I 6 HOH A 119 719 27 HOH HOH . I 6 HOH A 120 720 32 HOH HOH . I 6 HOH A 121 721 28 HOH HOH . I 6 HOH A 122 722 17 HOH HOH . I 6 HOH A 123 723 114 HOH HOH . I 6 HOH A 124 724 169 HOH HOH . I 6 HOH A 125 725 143 HOH HOH . I 6 HOH A 126 726 77 HOH HOH . I 6 HOH A 127 727 163 HOH HOH . I 6 HOH A 128 728 99 HOH HOH . I 6 HOH A 129 729 81 HOH HOH . I 6 HOH A 130 730 69 HOH HOH . I 6 HOH A 131 731 48 HOH HOH . I 6 HOH A 132 732 86 HOH HOH . I 6 HOH A 133 733 78 HOH HOH . I 6 HOH A 134 734 42 HOH HOH . I 6 HOH A 135 735 4 HOH HOH . I 6 HOH A 136 736 85 HOH HOH . I 6 HOH A 137 737 73 HOH HOH . I 6 HOH A 138 738 52 HOH HOH . I 6 HOH A 139 739 62 HOH HOH . I 6 HOH A 140 740 111 HOH HOH . I 6 HOH A 141 741 159 HOH HOH . I 6 HOH A 142 742 55 HOH HOH . I 6 HOH A 143 743 94 HOH HOH . I 6 HOH A 144 744 79 HOH HOH . I 6 HOH A 145 745 87 HOH HOH . I 6 HOH A 146 746 167 HOH HOH . I 6 HOH A 147 747 144 HOH HOH . I 6 HOH A 148 748 115 HOH HOH . I 6 HOH A 149 749 150 HOH HOH . I 6 HOH A 150 750 131 HOH HOH . I 6 HOH A 151 751 93 HOH HOH . I 6 HOH A 152 752 178 HOH HOH . I 6 HOH A 153 753 101 HOH HOH . I 6 HOH A 154 754 154 HOH HOH . I 6 HOH A 155 755 100 HOH HOH . I 6 HOH A 156 756 153 HOH HOH . I 6 HOH A 157 757 142 HOH HOH . I 6 HOH A 158 758 139 HOH HOH . I 6 HOH A 159 759 138 HOH HOH . I 6 HOH A 160 760 166 HOH HOH . I 6 HOH A 161 761 158 HOH HOH . I 6 HOH A 162 762 128 HOH HOH . I 6 HOH A 163 763 132 HOH HOH . I 6 HOH A 164 764 71 HOH HOH . I 6 HOH A 165 765 120 HOH HOH . I 6 HOH A 166 766 104 HOH HOH . I 6 HOH A 167 767 177 HOH HOH . I 6 HOH A 168 768 110 HOH HOH . I 6 HOH A 169 769 39 HOH HOH . I 6 HOH A 170 770 122 HOH HOH . I 6 HOH A 171 771 31 HOH HOH . I 6 HOH A 172 772 133 HOH HOH . I 6 HOH A 173 773 170 HOH HOH . I 6 HOH A 174 774 137 HOH HOH . I 6 HOH A 175 775 75 HOH HOH . I 6 HOH A 176 776 118 HOH HOH . I 6 HOH A 177 777 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 -20.053 -23.017 -28.468 1 30.45 ? C1 EDO 507 A 1 HETATM 2 O O1 EDO . . . H 5 -21.199 -23.492 -29.117 1 27.9 ? O1 EDO 507 A 1 HETATM 3 C C2 EDO . . . H 5 -18.925 -24.051 -28.48 1 31.88 ? C2 EDO 507 A 1 HETATM 4 O O2 EDO . . . H 5 -18.501 -24.331 -29.787 1 32.32 ? O2 EDO 507 A 1 HETATM 5 H H11 EDO . . . H 5 -19.748 -22.214 -28.917 1 36.52 ? H11 EDO 507 A 1 HETATM 6 H H12 EDO . . . H 5 -20.278 -22.808 -27.548 1 36.52 ? H12 EDO 507 A 1 HETATM 7 H HO1 EDO . . . H 5 -21.873 -23.035 -28.874 1 33.46 ? HO1 EDO 507 A 1 HETATM 8 H H21 EDO . . . H 5 -18.175 -23.704 -27.972 1 38.24 ? H21 EDO 507 A 1 HETATM 9 H H22 EDO . . . H 5 -19.243 -24.87 -28.069 1 38.24 ? H22 EDO 507 A 1 HETATM 10 H HO2 EDO . . . H 5 -17.8 -24.811 -29.761 1 38.76 ? HO2 EDO 507 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #