data_6D31
#
_model_server_result.job_id            7IVvzfXzYIlkGbsJpbnh5g 
_model_server_result.datetime_utc      '2024-10-19 05:26:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6D31 
#
_exptl.entry_id    6D31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.26 
_cell.angle_gamma         90 
_cell.entry_id            6D31 
_cell.length_a            41.43 
_cell.length_b            52.077 
_cell.length_c            46.24 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 168 n n 
C1 C2 GOL sing 169 n n 
C1 H11 GOL sing 170 n n 
C1 H12 GOL sing 171 n n 
O1 HO1 GOL sing 172 n n 
C2 O2 GOL sing 173 n n 
C2 C3 GOL sing 174 n n 
C2 H2 GOL sing 175 n n 
O2 HO2 GOL sing 176 n n 
C3 O3 GOL sing 177 n n 
C3 H31 GOL sing 178 n n 
C3 H32 GOL sing 179 n n 
O3 HO3 GOL sing 180 n n 
#
_atom_sites.entry_id                     6D31 
_atom_sites.fract_transf_matrix[1][1]    0.024137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007041 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AMP A 1 301 3 AMP A . 
C 3 CL A 1 302 1 CL CL . 
D 4 GOL A 1 303 2 GOL GOL . 
E 5 HOH A 1 401 244 HOH HOH . 
E 5 HOH A 2 402 143 HOH HOH . 
E 5 HOH A 3 403 170 HOH HOH . 
E 5 HOH A 4 404 232 HOH HOH . 
E 5 HOH A 5 405 228 HOH HOH . 
E 5 HOH A 6 406 133 HOH HOH . 
E 5 HOH A 7 407 127 HOH HOH . 
E 5 HOH A 8 408 203 HOH HOH . 
E 5 HOH A 9 409 85 HOH HOH . 
E 5 HOH A 10 410 206 HOH HOH . 
E 5 HOH A 11 411 109 HOH HOH . 
E 5 HOH A 12 412 57 HOH HOH . 
E 5 HOH A 13 413 93 HOH HOH . 
E 5 HOH A 14 414 146 HOH HOH . 
E 5 HOH A 15 415 204 HOH HOH . 
E 5 HOH A 16 416 76 HOH HOH . 
E 5 HOH A 17 417 280 HOH HOH . 
E 5 HOH A 18 418 106 HOH HOH . 
E 5 HOH A 19 419 281 HOH HOH . 
E 5 HOH A 20 420 69 HOH HOH . 
E 5 HOH A 21 421 53 HOH HOH . 
E 5 HOH A 22 422 23 HOH HOH . 
E 5 HOH A 23 423 13 HOH HOH . 
E 5 HOH A 24 424 121 HOH HOH . 
E 5 HOH A 25 425 80 HOH HOH . 
E 5 HOH A 26 426 64 HOH HOH . 
E 5 HOH A 27 427 7 HOH HOH . 
E 5 HOH A 28 428 61 HOH HOH . 
E 5 HOH A 29 429 46 HOH HOH . 
E 5 HOH A 30 430 117 HOH HOH . 
E 5 HOH A 31 431 148 HOH HOH . 
E 5 HOH A 32 432 247 HOH HOH . 
E 5 HOH A 33 433 111 HOH HOH . 
E 5 HOH A 34 434 19 HOH HOH . 
E 5 HOH A 35 435 277 HOH HOH . 
E 5 HOH A 36 436 55 HOH HOH . 
E 5 HOH A 37 437 108 HOH HOH . 
E 5 HOH A 38 438 3 HOH HOH . 
E 5 HOH A 39 439 260 HOH HOH . 
E 5 HOH A 40 440 68 HOH HOH . 
E 5 HOH A 41 441 34 HOH HOH . 
E 5 HOH A 42 442 249 HOH HOH . 
E 5 HOH A 43 443 154 HOH HOH . 
E 5 HOH A 44 444 89 HOH HOH . 
E 5 HOH A 45 445 224 HOH HOH . 
E 5 HOH A 46 446 222 HOH HOH . 
E 5 HOH A 47 447 158 HOH HOH . 
E 5 HOH A 48 448 96 HOH HOH . 
E 5 HOH A 49 449 28 HOH HOH . 
E 5 HOH A 50 450 67 HOH HOH . 
E 5 HOH A 51 451 1 HOH HOH . 
E 5 HOH A 52 452 240 HOH HOH . 
E 5 HOH A 53 453 32 HOH HOH . 
E 5 HOH A 54 454 44 HOH HOH . 
E 5 HOH A 55 455 16 HOH HOH . 
E 5 HOH A 56 456 10 HOH HOH . 
E 5 HOH A 57 457 38 HOH HOH . 
E 5 HOH A 58 458 211 HOH HOH . 
E 5 HOH A 59 459 279 HOH HOH . 
E 5 HOH A 60 460 4 HOH HOH . 
E 5 HOH A 61 461 49 HOH HOH . 
E 5 HOH A 62 462 48 HOH HOH . 
E 5 HOH A 63 463 63 HOH HOH . 
E 5 HOH A 64 464 30 HOH HOH . 
E 5 HOH A 65 465 163 HOH HOH . 
E 5 HOH A 66 466 87 HOH HOH . 
E 5 HOH A 67 467 14 HOH HOH . 
E 5 HOH A 68 468 65 HOH HOH . 
E 5 HOH A 69 469 6 HOH HOH . 
E 5 HOH A 70 470 5 HOH HOH . 
E 5 HOH A 71 471 161 HOH HOH . 
E 5 HOH A 72 472 2 HOH HOH . 
E 5 HOH A 73 473 47 HOH HOH . 
E 5 HOH A 74 474 164 HOH HOH . 
E 5 HOH A 75 475 82 HOH HOH . 
E 5 HOH A 76 476 167 HOH HOH . 
E 5 HOH A 77 477 20 HOH HOH . 
E 5 HOH A 78 478 157 HOH HOH . 
E 5 HOH A 79 479 135 HOH HOH . 
E 5 HOH A 80 480 190 HOH HOH . 
E 5 HOH A 81 481 261 HOH HOH . 
E 5 HOH A 82 482 17 HOH HOH . 
E 5 HOH A 83 483 173 HOH HOH . 
E 5 HOH A 84 484 258 HOH HOH . 
E 5 HOH A 85 485 70 HOH HOH . 
E 5 HOH A 86 486 273 HOH HOH . 
E 5 HOH A 87 487 51 HOH HOH . 
E 5 HOH A 88 488 86 HOH HOH . 
E 5 HOH A 89 489 45 HOH HOH . 
E 5 HOH A 90 490 113 HOH HOH . 
E 5 HOH A 91 491 83 HOH HOH . 
E 5 HOH A 92 492 276 HOH HOH . 
E 5 HOH A 93 493 149 HOH HOH . 
E 5 HOH A 94 494 35 HOH HOH . 
E 5 HOH A 95 495 8 HOH HOH . 
E 5 HOH A 96 496 102 HOH HOH . 
E 5 HOH A 97 497 112 HOH HOH . 
E 5 HOH A 98 498 59 HOH HOH . 
E 5 HOH A 99 499 40 HOH HOH . 
E 5 HOH A 100 500 29 HOH HOH . 
E 5 HOH A 101 501 231 HOH HOH . 
E 5 HOH A 102 502 56 HOH HOH . 
E 5 HOH A 103 503 21 HOH HOH . 
E 5 HOH A 104 504 78 HOH HOH . 
E 5 HOH A 105 505 11 HOH HOH . 
E 5 HOH A 106 506 42 HOH HOH . 
E 5 HOH A 107 507 132 HOH HOH . 
E 5 HOH A 108 508 125 HOH HOH . 
E 5 HOH A 109 509 9 HOH HOH . 
E 5 HOH A 110 510 25 HOH HOH . 
E 5 HOH A 111 511 202 HOH HOH . 
E 5 HOH A 112 512 147 HOH HOH . 
E 5 HOH A 113 513 18 HOH HOH . 
E 5 HOH A 114 514 12 HOH HOH . 
E 5 HOH A 115 515 120 HOH HOH . 
E 5 HOH A 116 516 119 HOH HOH . 
E 5 HOH A 117 517 137 HOH HOH . 
E 5 HOH A 118 518 22 HOH HOH . 
E 5 HOH A 119 519 105 HOH HOH . 
E 5 HOH A 120 520 84 HOH HOH . 
E 5 HOH A 121 521 270 HOH HOH . 
E 5 HOH A 122 522 66 HOH HOH . 
E 5 HOH A 123 523 126 HOH HOH . 
E 5 HOH A 124 524 97 HOH HOH . 
E 5 HOH A 125 525 74 HOH HOH . 
E 5 HOH A 126 526 33 HOH HOH . 
E 5 HOH A 127 527 73 HOH HOH . 
E 5 HOH A 128 528 43 HOH HOH . 
E 5 HOH A 129 529 79 HOH HOH . 
E 5 HOH A 130 530 128 HOH HOH . 
E 5 HOH A 131 531 101 HOH HOH . 
E 5 HOH A 132 532 230 HOH HOH . 
E 5 HOH A 133 533 50 HOH HOH . 
E 5 HOH A 134 534 26 HOH HOH . 
E 5 HOH A 135 535 138 HOH HOH . 
E 5 HOH A 136 536 131 HOH HOH . 
E 5 HOH A 137 537 90 HOH HOH . 
E 5 HOH A 138 538 24 HOH HOH . 
E 5 HOH A 139 539 162 HOH HOH . 
E 5 HOH A 140 540 160 HOH HOH . 
E 5 HOH A 141 541 60 HOH HOH . 
E 5 HOH A 142 542 165 HOH HOH . 
E 5 HOH A 143 543 72 HOH HOH . 
E 5 HOH A 144 544 269 HOH HOH . 
E 5 HOH A 145 545 272 HOH HOH . 
E 5 HOH A 146 546 27 HOH HOH . 
E 5 HOH A 147 547 37 HOH HOH . 
E 5 HOH A 148 548 58 HOH HOH . 
E 5 HOH A 149 549 150 HOH HOH . 
E 5 HOH A 150 550 192 HOH HOH . 
E 5 HOH A 151 551 94 HOH HOH . 
E 5 HOH A 152 552 77 HOH HOH . 
E 5 HOH A 153 553 107 HOH HOH . 
E 5 HOH A 154 554 62 HOH HOH . 
E 5 HOH A 155 555 15 HOH HOH . 
E 5 HOH A 156 556 130 HOH HOH . 
E 5 HOH A 157 557 200 HOH HOH . 
E 5 HOH A 158 558 207 HOH HOH . 
E 5 HOH A 159 559 168 HOH HOH . 
E 5 HOH A 160 560 81 HOH HOH . 
E 5 HOH A 161 561 52 HOH HOH . 
E 5 HOH A 162 562 129 HOH HOH . 
E 5 HOH A 163 563 275 HOH HOH . 
E 5 HOH A 164 564 134 HOH HOH . 
E 5 HOH A 165 565 110 HOH HOH . 
E 5 HOH A 166 566 153 HOH HOH . 
E 5 HOH A 167 567 239 HOH HOH . 
E 5 HOH A 168 568 257 HOH HOH . 
E 5 HOH A 169 569 136 HOH HOH . 
E 5 HOH A 170 570 209 HOH HOH . 
E 5 HOH A 171 571 122 HOH HOH . 
E 5 HOH A 172 572 233 HOH HOH . 
E 5 HOH A 173 573 185 HOH HOH . 
E 5 HOH A 174 574 226 HOH HOH . 
E 5 HOH A 175 575 227 HOH HOH . 
E 5 HOH A 176 576 242 HOH HOH . 
E 5 HOH A 177 577 254 HOH HOH . 
E 5 HOH A 178 578 100 HOH HOH . 
E 5 HOH A 179 579 124 HOH HOH . 
E 5 HOH A 180 580 235 HOH HOH . 
E 5 HOH A 181 581 139 HOH HOH . 
E 5 HOH A 182 582 278 HOH HOH . 
E 5 HOH A 183 583 252 HOH HOH . 
E 5 HOH A 184 584 199 HOH HOH . 
E 5 HOH A 185 585 41 HOH HOH . 
E 5 HOH A 186 586 188 HOH HOH . 
E 5 HOH A 187 587 237 HOH HOH . 
E 5 HOH A 188 588 140 HOH HOH . 
E 5 HOH A 189 589 156 HOH HOH . 
E 5 HOH A 190 590 141 HOH HOH . 
E 5 HOH A 191 591 71 HOH HOH . 
E 5 HOH A 192 592 31 HOH HOH . 
E 5 HOH A 193 593 229 HOH HOH . 
E 5 HOH A 194 594 219 HOH HOH . 
E 5 HOH A 195 595 205 HOH HOH . 
E 5 HOH A 196 596 39 HOH HOH . 
E 5 HOH A 197 597 144 HOH HOH . 
E 5 HOH A 198 598 223 HOH HOH . 
E 5 HOH A 199 599 104 HOH HOH . 
E 5 HOH A 200 600 225 HOH HOH . 
E 5 HOH A 201 601 91 HOH HOH . 
E 5 HOH A 202 602 116 HOH HOH . 
E 5 HOH A 203 603 54 HOH HOH . 
E 5 HOH A 204 604 217 HOH HOH . 
E 5 HOH A 205 605 103 HOH HOH . 
E 5 HOH A 206 606 95 HOH HOH . 
E 5 HOH A 207 607 75 HOH HOH . 
E 5 HOH A 208 608 92 HOH HOH . 
E 5 HOH A 209 609 274 HOH HOH . 
E 5 HOH A 210 610 151 HOH HOH . 
E 5 HOH A 211 611 172 HOH HOH . 
E 5 HOH A 212 612 123 HOH HOH . 
E 5 HOH A 213 613 216 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -17.596 7.814 76.286 1 28.22 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 -18.424 8.165 77.435 1 26.76 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 -16.26 7.409 76.837 1 28.33 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 -16.424 6.165 77.56 1 25.19 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 -15.186 7.249 75.763 1 31.46 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 -13.971 6.809 76.438 1 34.1 ? O3 GOL 303 A 1 
HETATM 7 H H11 GOL . . . D 4 -18.045 6.99 75.732 1 33.86 ? H11 GOL 303 A 1 
HETATM 8 H H12 GOL . . . D 4 -17.488 8.67 75.62 1 33.86 ? H12 GOL 303 A 1 
HETATM 9 H HO1 GOL . . . D 4 -19.29 8.501 77.123 1 32.11 ? HO1 GOL 303 A 1 
HETATM 10 H H2 GOL . . . D 4 -15.932 8.184 77.529 1 33.99 ? H2 GOL 303 A 1 
HETATM 11 H HO2 GOL . . . D 4 -16.682 5.455 76.935 1 30.23 ? HO2 GOL 303 A 1 
HETATM 12 H H31 GOL . . . D 4 -15.497 6.511 75.024 1 37.76 ? H31 GOL 303 A 1 
HETATM 13 H H32 GOL . . . D 4 -15.014 8.2 75.257 1 37.76 ? H32 GOL 303 A 1 
HETATM 14 H HO3 GOL . . . D 4 -13.447 6.245 75.832 1 40.93 ? HO3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#