data_6D32 # _model_server_result.job_id 3wstV8AV05GGanWzqXR7QA _model_server_result.datetime_utc '2024-11-18 19:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6D32 # _exptl.entry_id 6D32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cyclopamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.51 _cell.angle_gamma 90 _cell.entry_id 6D32 _cell.length_a 145.778 _cell.length_b 79.232 _cell.length_c 104.076 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 37 1_555 A SG CYS 119 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 11 A CYS 43 1_555 A SG CYS 75 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 19 A CYS 51 1_555 A SG CYS 68 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 59 A CYS 91 1_555 A SG CYS 95 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 88 A CYS 120 1_555 A SG CYS 110 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 134 A CYS 166 1_555 A SG CYS 154 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 158 A CYS 190 1_555 A SG CYS 236 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 255 A CYS 287 1_555 A SG CYS 331 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 535 A CYS 463 1_555 A SG CYS 552 A CYS 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H41 N O2' _chem_comp.formula_weight 411.62 _chem_comp.id CY8 _chem_comp.mon_nstd_flag . _chem_comp.name Cyclopamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N03 C29 CY8 sing 70 n n N03 C16 CY8 sing 71 n n C26 C12 CY8 sing 72 n n C29 C28 CY8 sing 73 n n C28 C30 CY8 sing 74 n n C28 C24 CY8 sing 75 n n C13 C11 CY8 sing 76 n n C13 C08 CY8 sing 77 n n C18 C16 CY8 sing 78 n n C18 C24 CY8 sing 79 n n C18 O01 CY8 sing 80 n n C11 C06 CY8 sing 81 n n C16 C12 CY8 sing 82 n n C12 C08 CY8 sing 83 n n C08 O01 CY8 sing 84 n n C08 C14 CY8 sing 85 n n C15 C05 CY8 sing 86 n n C15 C20 CY8 sing 87 n n C06 C05 CY8 sing 88 n n C06 C09 CY8 sing 89 n n C05 C04 CY8 sing 90 n n C20 C17 CY8 doub 91 n n C14 C09 CY8 doub 92 n n C14 C27 CY8 sing 93 n n C09 C10 CY8 sing 94 n n C04 C10 CY8 sing 95 n n C04 C07 CY8 sing 96 n n C17 C07 CY8 sing 97 n n C17 C22 CY8 sing 98 n n C07 C21 CY8 sing 99 n n C07 C19 CY8 sing 100 n n C22 C25 CY8 sing 101 n n C19 C23 CY8 sing 102 n n C25 O02 CY8 sing 103 n n C25 C23 CY8 sing 104 n n O02 H1 CY8 sing 105 n n N03 H2 CY8 sing 106 n n C04 H4 CY8 sing 107 n n C05 H5 CY8 sing 108 n n C06 H6 CY8 sing 109 n n C10 H7 CY8 sing 110 n n C10 H8 CY8 sing 111 n n C11 H9 CY8 sing 112 n n C11 H10 CY8 sing 113 n n C12 H11 CY8 sing 114 n n C13 H12 CY8 sing 115 n n C13 H13 CY8 sing 116 n n C15 H14 CY8 sing 117 n n C15 H15 CY8 sing 118 n n C16 H16 CY8 sing 119 n n C18 H17 CY8 sing 120 n n C19 H18 CY8 sing 121 n n C19 H19 CY8 sing 122 n n C20 H20 CY8 sing 123 n n C21 H21 CY8 sing 124 n n C21 H22 CY8 sing 125 n n C21 H23 CY8 sing 126 n n C22 H24 CY8 sing 127 n n C22 H25 CY8 sing 128 n n C23 H26 CY8 sing 129 n n C23 H27 CY8 sing 130 n n C24 H28 CY8 sing 131 n n C24 H29 CY8 sing 132 n n C25 H30 CY8 sing 133 n n C26 H31 CY8 sing 134 n n C26 H32 CY8 sing 135 n n C26 H33 CY8 sing 136 n n C27 H34 CY8 sing 137 n n C27 H35 CY8 sing 138 n n C27 H36 CY8 sing 139 n n C28 H37 CY8 sing 140 n n C29 H38 CY8 sing 141 n n C29 H39 CY8 sing 142 n n C30 H40 CY8 sing 143 n n C30 H41 CY8 sing 144 n n C30 H42 CY8 sing 145 n n # _atom_sites.entry_id 6D32 _atom_sites.fract_transf_matrix[1][1] 0.00686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CY8 A 1 1201 1201 CY8 CY8 . C 2 CY8 A 1 1202 1202 CY8 CY8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 CY8 . . . B 2 12.573 -11.896 53.266 1 130.91 ? O01 CY8 1201 A 1 HETATM 2 O O02 CY8 . . . B 2 4.657 -18.305 53.737 1 99.98 ? O02 CY8 1201 A 1 HETATM 3 N N03 CY8 . . . B 2 15.534 -10.221 52.175 1 146.94 ? N03 CY8 1201 A 1 HETATM 4 C C04 CY8 . . . B 2 9.855 -16.07 53.492 1 116.86 ? C04 CY8 1201 A 1 HETATM 5 C C05 CY8 . . . B 2 10.383 -15.445 54.774 1 127.49 ? C05 CY8 1201 A 1 HETATM 6 C C06 CY8 . . . B 2 11.85 -15.169 54.497 1 127.96 ? C06 CY8 1201 A 1 HETATM 7 C C07 CY8 . . . B 2 8.336 -16.068 53.473 1 117 ? C07 CY8 1201 A 1 HETATM 8 C C08 CY8 . . . B 2 13.426 -13.048 53.183 1 135.68 ? C08 CY8 1201 A 1 HETATM 9 C C09 CY8 . . . B 2 11.774 -14.836 53.042 1 125.91 ? C09 CY8 1201 A 1 HETATM 10 C C10 CY8 . . . B 2 10.537 -15.343 52.34 1 116.9 ? C10 CY8 1201 A 1 HETATM 11 C C11 CY8 . . . B 2 12.442 -14.001 55.277 1 129.81 ? C11 CY8 1201 A 1 HETATM 12 C C12 CY8 . . . B 2 14.666 -12.632 52.39 1 131.78 ? C12 CY8 1201 A 1 HETATM 13 C C13 CY8 . . . B 2 13.725 -13.523 54.601 1 138.34 ? C13 CY8 1201 A 1 HETATM 14 C C14 CY8 . . . B 2 12.72 -14.144 52.431 1 132.15 ? C14 CY8 1201 A 1 HETATM 15 C C15 CY8 . . . B 2 10.091 -16.375 55.933 1 124.3 ? C15 CY8 1201 A 1 HETATM 16 C C16 CY8 . . . B 2 14.411 -11.165 52.082 1 142.61 ? C16 CY8 1201 A 1 HETATM 17 C C17 CY8 . . . B 2 7.841 -16.636 54.793 1 116.06 ? C17 CY8 1201 A 1 HETATM 18 C C18 CY8 . . . B 2 13.406 -10.749 53.126 1 139.94 ? C18 CY8 1201 A 1 HETATM 19 C C19 CY8 . . . B 2 7.826 -16.909 52.308 1 97.23 ? C19 CY8 1201 A 1 HETATM 20 C C20 CY8 . . . B 2 8.609 -16.685 55.906 1 118.9 ? C20 CY8 1201 A 1 HETATM 21 C C21 CY8 . . . B 2 7.82 -14.641 53.322 1 127.76 ? C21 CY8 1201 A 1 HETATM 22 C C22 CY8 . . . B 2 6.426 -17.158 54.908 1 102.63 ? C22 CY8 1201 A 1 HETATM 23 C C23 CY8 . . . B 2 6.324 -17.125 52.43 1 105.23 ? C23 CY8 1201 A 1 HETATM 24 C C24 CY8 . . . B 2 12.741 -9.474 52.638 1 138.54 ? C24 CY8 1201 A 1 HETATM 25 C C25 CY8 . . . B 2 6.046 -17.962 53.671 1 100.55 ? C25 CY8 1201 A 1 HETATM 26 C C26 CY8 . . . B 2 15.985 -12.928 53.088 1 121.82 ? C26 CY8 1201 A 1 HETATM 27 C C27 CY8 . . . B 2 13.069 -14.467 51.008 1 134.4 ? C27 CY8 1201 A 1 HETATM 28 C C28 CY8 . . . B 2 13.834 -8.412 52.498 1 139.3 ? C28 CY8 1201 A 1 HETATM 29 C C29 CY8 . . . B 2 15.024 -8.923 51.674 1 141.22 ? C29 CY8 1201 A 1 HETATM 30 C C30 CY8 . . . B 2 13.27 -7.124 51.904 1 134.82 ? C30 CY8 1201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #