data_6D32 # _model_server_result.job_id -EQ5NAUTZmVLrJZS3skcBA _model_server_result.datetime_utc '2024-11-18 19:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 6D32 # _exptl.entry_id 6D32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cyclopamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.51 _cell.angle_gamma 90 _cell.entry_id 6D32 _cell.length_a 145.778 _cell.length_b 79.232 _cell.length_c 104.076 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 37 1_555 A SG CYS 119 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 11 A CYS 43 1_555 A SG CYS 75 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 19 A CYS 51 1_555 A SG CYS 68 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 59 A CYS 91 1_555 A SG CYS 95 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 88 A CYS 120 1_555 A SG CYS 110 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 134 A CYS 166 1_555 A SG CYS 154 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 158 A CYS 190 1_555 A SG CYS 236 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 255 A CYS 287 1_555 A SG CYS 331 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 535 A CYS 463 1_555 A SG CYS 552 A CYS 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H41 N O2' _chem_comp.formula_weight 411.62 _chem_comp.id CY8 _chem_comp.mon_nstd_flag . _chem_comp.name Cyclopamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N03 C29 CY8 sing 70 n n N03 C16 CY8 sing 71 n n C26 C12 CY8 sing 72 n n C29 C28 CY8 sing 73 n n C28 C30 CY8 sing 74 n n C28 C24 CY8 sing 75 n n C13 C11 CY8 sing 76 n n C13 C08 CY8 sing 77 n n C18 C16 CY8 sing 78 n n C18 C24 CY8 sing 79 n n C18 O01 CY8 sing 80 n n C11 C06 CY8 sing 81 n n C16 C12 CY8 sing 82 n n C12 C08 CY8 sing 83 n n C08 O01 CY8 sing 84 n n C08 C14 CY8 sing 85 n n C15 C05 CY8 sing 86 n n C15 C20 CY8 sing 87 n n C06 C05 CY8 sing 88 n n C06 C09 CY8 sing 89 n n C05 C04 CY8 sing 90 n n C20 C17 CY8 doub 91 n n C14 C09 CY8 doub 92 n n C14 C27 CY8 sing 93 n n C09 C10 CY8 sing 94 n n C04 C10 CY8 sing 95 n n C04 C07 CY8 sing 96 n n C17 C07 CY8 sing 97 n n C17 C22 CY8 sing 98 n n C07 C21 CY8 sing 99 n n C07 C19 CY8 sing 100 n n C22 C25 CY8 sing 101 n n C19 C23 CY8 sing 102 n n C25 O02 CY8 sing 103 n n C25 C23 CY8 sing 104 n n O02 H1 CY8 sing 105 n n N03 H2 CY8 sing 106 n n C04 H4 CY8 sing 107 n n C05 H5 CY8 sing 108 n n C06 H6 CY8 sing 109 n n C10 H7 CY8 sing 110 n n C10 H8 CY8 sing 111 n n C11 H9 CY8 sing 112 n n C11 H10 CY8 sing 113 n n C12 H11 CY8 sing 114 n n C13 H12 CY8 sing 115 n n C13 H13 CY8 sing 116 n n C15 H14 CY8 sing 117 n n C15 H15 CY8 sing 118 n n C16 H16 CY8 sing 119 n n C18 H17 CY8 sing 120 n n C19 H18 CY8 sing 121 n n C19 H19 CY8 sing 122 n n C20 H20 CY8 sing 123 n n C21 H21 CY8 sing 124 n n C21 H22 CY8 sing 125 n n C21 H23 CY8 sing 126 n n C22 H24 CY8 sing 127 n n C22 H25 CY8 sing 128 n n C23 H26 CY8 sing 129 n n C23 H27 CY8 sing 130 n n C24 H28 CY8 sing 131 n n C24 H29 CY8 sing 132 n n C25 H30 CY8 sing 133 n n C26 H31 CY8 sing 134 n n C26 H32 CY8 sing 135 n n C26 H33 CY8 sing 136 n n C27 H34 CY8 sing 137 n n C27 H35 CY8 sing 138 n n C27 H36 CY8 sing 139 n n C28 H37 CY8 sing 140 n n C29 H38 CY8 sing 141 n n C29 H39 CY8 sing 142 n n C30 H40 CY8 sing 143 n n C30 H41 CY8 sing 144 n n C30 H42 CY8 sing 145 n n # _atom_sites.entry_id 6D32 _atom_sites.fract_transf_matrix[1][1] 0.00686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CY8 A 1 1201 1201 CY8 CY8 . C 2 CY8 A 1 1202 1202 CY8 CY8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 CY8 . . . C 2 16.695 -38.436 24.727 1 152.52 ? O01 CY8 1202 A 1 HETATM 2 O O02 CY8 . . . C 2 18.838 -44.515 15.916 1 98.09 ? O02 CY8 1202 A 1 HETATM 3 N N03 CY8 . . . C 2 14.599 -38.106 27.587 1 115.9 ? N03 CY8 1202 A 1 HETATM 4 C C04 CY8 . . . C 2 16.626 -42.273 20.659 1 120.05 ? C04 CY8 1202 A 1 HETATM 5 C C05 CY8 . . . C 2 15.923 -40.945 20.459 1 124.93 ? C05 CY8 1202 A 1 HETATM 6 C C06 CY8 . . . C 2 15.319 -40.65 21.82 1 130.33 ? C06 CY8 1202 A 1 HETATM 7 C C07 CY8 . . . C 2 17.588 -42.545 19.518 1 124.06 ? C07 CY8 1202 A 1 HETATM 8 C C08 CY8 . . . C 2 15.826 -39.556 24.529 1 150.01 ? C08 CY8 1202 A 1 HETATM 9 C C09 CY8 . . . C 2 16.389 -41.175 22.719 1 134.54 ? C09 CY8 1202 A 1 HETATM 10 C C10 CY8 . . . C 2 17.241 -42.232 22.057 1 119.27 ? C10 CY8 1202 A 1 HETATM 11 C C11 CY8 . . . C 2 15.108 -39.185 22.136 1 124.69 ? C11 CY8 1202 A 1 HETATM 12 C C12 CY8 . . . C 2 15.294 -39.906 25.919 1 124.83 ? C12 CY8 1202 A 1 HETATM 13 C C13 CY8 . . . C 2 14.701 -39.11 23.599 1 131.49 ? C13 CY8 1202 A 1 HETATM 14 C C14 CY8 . . . C 2 16.583 -40.744 23.968 1 144.4 ? C14 CY8 1202 A 1 HETATM 15 C C15 CY8 . . . C 2 14.964 -41.071 19.291 1 126.35 ? C15 CY8 1202 A 1 HETATM 16 C C16 CY8 . . . C 2 15.667 -38.704 26.771 1 117.47 ? C16 CY8 1202 A 1 HETATM 17 C C17 CY8 . . . C 2 16.921 -42.239 18.193 1 118.68 ? C17 CY8 1202 A 1 HETATM 18 C C18 CY8 . . . C 2 16.039 -37.672 25.737 1 144.89 ? C18 CY8 1202 A 1 HETATM 19 C C19 CY8 . . . C 2 17.997 -44.011 19.543 1 114.13 ? C19 CY8 1202 A 1 HETATM 20 C C20 CY8 . . . C 2 15.762 -41.551 18.095 1 117.79 ? C20 CY8 1202 A 1 HETATM 21 C C21 CY8 . . . C 2 18.809 -41.644 19.664 1 115.53 ? C21 CY8 1202 A 1 HETATM 22 C C22 CY8 . . . C 2 17.601 -42.696 16.922 1 108.74 ? C22 CY8 1202 A 1 HETATM 23 C C23 CY8 . . . C 2 18.83 -44.362 18.319 1 97.45 ? C23 CY8 1202 A 1 HETATM 24 C C24 CY8 . . . C 2 16.812 -36.563 26.428 1 131.84 ? C24 CY8 1202 A 1 HETATM 25 C C25 CY8 . . . C 2 18.028 -44.156 17.041 1 100.64 ? C25 CY8 1202 A 1 HETATM 26 C C26 CY8 . . . C 2 13.804 -40.218 25.947 1 114.88 ? C26 CY8 1202 A 1 HETATM 27 C C27 CY8 . . . C 2 17.579 -41.449 24.841 1 128.61 ? C27 CY8 1202 A 1 HETATM 28 C C28 CY8 . . . C 2 15.833 -35.922 27.414 1 130.31 ? C28 CY8 1202 A 1 HETATM 29 C C29 CY8 . . . C 2 15.193 -36.973 28.333 1 122.35 ? C29 CY8 1202 A 1 HETATM 30 C C30 CY8 . . . C 2 16.511 -34.827 28.229 1 121 ? C30 CY8 1202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 30 #