data_6D3I
#
_model_server_result.job_id            nwlvPO355JNnIglAOy0Gmg 
_model_server_result.datetime_utc      '2024-11-01 11:35:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d3i 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    6D3I 
#
_exptl.entry_id    6D3I 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D3I 
_cell.length_a            94.927 
_cell.length_b            109.98 
_cell.length_c            116.145 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,K,L,O,Q 1 1 
B,D,G,H,I,M,N,P,R 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 94.927 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 J N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 111 A HIS 111 1_555 E CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc2 A OD1 ASP 113 A ASP 113 1_555 E CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc3 A NE2 HIS 270 A HIS 270 1_555 E CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 E CO CO . A CO 301 1_555 F O1 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc5 B NE2 HIS 111 G HIS 111 1_555 G CO CO . G CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc6 B OD1 ASP 113 G ASP 113 1_555 G CO CO . G CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc7 B NE2 HIS 270 G HIS 270 1_555 G CO CO . G CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? 
metalc ? metalc8 G CO CO . G CO 301 1_555 H O5 AKG . G AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc9 C NE2 HIS 111 D HIS 111 1_555 J CO CO . D CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 C OD1 ASP 113 D ASP 113 1_555 J CO CO . D CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc11 C NE2 HIS 270 D HIS 270 1_555 J CO CO . D CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc12 J CO CO . D CO 301 1_555 K O5 AKG . D AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc13 D NE2 HIS 111 J HIS 111 1_555 M CO CO . J CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc14 D OD1 ASP 113 J ASP 113 1_555 M CO CO . J CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc15 D NE2 HIS 270 J HIS 270 1_555 M CO CO . J CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc16 M CO CO . J CO 301 1_555 N O2 AKG . J AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
metalc ? metalc17 M CO CO . J CO 301 1_555 N O5 AKG . J AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6D3I 
_atom_sites.fract_transf_matrix[1][1]    0.010534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CO A 1 301 4 CO CO . 
F 3 AKG A 1 302 3 AKG AKG . 
G 2 CO G 1 301 1 CO CO . 
H 3 AKG G 1 302 4 AKG AKG . 
I 4 CFA G 1 303 701 CFA 24D . 
J 2 CO D 1 301 1 CO CO . 
K 3 AKG D 1 302 4 AKG AKG . 
L 4 CFA D 1 303 701 CFA 24D . 
M 2 CO J 1 301 1 CO CO . 
N 3 AKG J 1 302 4 AKG AKG . 
O 5 HOH A 1 401 13 HOH HOH . 
O 5 HOH A 2 402 48 HOH HOH . 
O 5 HOH A 3 403 20 HOH HOH . 
O 5 HOH A 4 404 55 HOH HOH . 
O 5 HOH A 5 405 29 HOH HOH . 
O 5 HOH A 6 406 63 HOH HOH . 
O 5 HOH A 7 407 40 HOH HOH . 
O 5 HOH A 8 408 10 HOH HOH . 
O 5 HOH A 9 409 70 HOH HOH . 
O 5 HOH A 10 410 31 HOH HOH . 
O 5 HOH A 11 411 1 HOH HOH . 
O 5 HOH A 12 412 18 HOH HOH . 
O 5 HOH A 13 413 3 HOH HOH . 
O 5 HOH A 14 414 46 HOH HOH . 
O 5 HOH A 15 415 50 HOH HOH . 
P 5 HOH G 1 401 15 HOH HOH . 
P 5 HOH G 2 402 41 HOH HOH . 
P 5 HOH G 3 403 2 HOH HOH . 
P 5 HOH G 4 404 14 HOH HOH . 
P 5 HOH G 5 405 66 HOH HOH . 
P 5 HOH G 6 406 67 HOH HOH . 
P 5 HOH G 7 407 56 HOH HOH . 
P 5 HOH G 8 408 44 HOH HOH . 
P 5 HOH G 9 409 59 HOH HOH . 
P 5 HOH G 10 410 32 HOH HOH . 
Q 5 HOH D 1 401 68 HOH HOH . 
Q 5 HOH D 2 402 6 HOH HOH . 
Q 5 HOH D 3 403 8 HOH HOH . 
Q 5 HOH D 4 404 7 HOH HOH . 
Q 5 HOH D 5 405 12 HOH HOH . 
Q 5 HOH D 6 406 51 HOH HOH . 
Q 5 HOH D 7 407 22 HOH HOH . 
Q 5 HOH D 8 408 16 HOH HOH . 
Q 5 HOH D 9 409 45 HOH HOH . 
R 5 HOH J 1 401 5 HOH HOH . 
R 5 HOH J 2 402 24 HOH HOH . 
R 5 HOH J 3 403 19 HOH HOH . 
R 5 HOH J 4 404 43 HOH HOH . 
R 5 HOH J 5 405 60 HOH HOH . 
R 5 HOH J 6 406 36 HOH HOH . 
R 5 HOH J 7 407 69 HOH HOH . 
R 5 HOH J 8 408 35 HOH HOH . 
R 5 HOH J 9 409 47 HOH HOH . 
R 5 HOH J 10 410 38 HOH HOH . 
R 5 HOH J 11 411 52 HOH HOH . 
R 5 HOH J 12 412 23 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               5.554 
_atom_site.Cartn_y               -16.359 
_atom_site.Cartn_z               17.792 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           1 
#