data_6D3K
#
_model_server_result.job_id            VYS9C4rKpUWYnCxl_ILuHA 
_model_server_result.datetime_utc      '2024-11-14 18:47:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":605}' 
#
_entry.id    6D3K 
#
_exptl.entry_id    6D3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D3K 
_cell.length_a            106.48 
_cell.length_b            159.6 
_cell.length_c            172.99 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,U,V 1 1 
A,C,D,E,F,G,N,O,P,Q,R,S,T,U,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 191 B ASN 419 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 A OD2 ASP 204 B ASP 432 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc3 D O3B ADP . B ADP 601 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc4 D O2A ADP . B ADP 601 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 B OD1 ASN 191 A ASN 419 1_555 J MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc6 B OD2 ASP 204 A ASP 432 1_555 J MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc7 H O1A ADP . A ADP 601 1_555 J MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc8 H O3A ADP . A ADP 601 1_555 J MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc9 C OD1 ASN 191 C ASN 419 1_555 P MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc10 C OD2 ASP 204 C ASP 432 1_555 P MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc11 N O2B ADP . C ADP 601 1_555 P MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc12 N O1A ADP . C ADP 601 1_555 P MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 338 n n 
S O2 SO4 doub 339 n n 
S O3 SO4 sing 340 n n 
S O4 SO4 sing 341 n n 
#
_atom_sites.entry_id                     6D3K 
_atom_sites.fract_transf_matrix[1][1]    0.009391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005781 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ADP B 1 601 600 ADP ADP . 
E 3 PO4 B 1 602 650 PO4 PO4 . 
F 4 MG B 1 603 700 MG MG . 
G 5 SO4 B 1 604 11 SO4 SO4 . 
H 2 ADP A 1 601 600 ADP ADP . 
I 3 PO4 A 1 602 650 PO4 PO4 . 
J 4 MG A 1 603 701 MG MG . 
K 5 SO4 A 1 604 2 SO4 SO4 . 
L 5 SO4 A 1 605 6 SO4 SO4 . 
M 5 SO4 A 1 606 7 SO4 SO4 . 
N 2 ADP C 1 601 601 ADP ADP . 
O 3 PO4 C 1 602 650 PO4 PO4 . 
P 4 MG C 1 603 700 MG MG . 
Q 5 SO4 C 1 604 1 SO4 SO4 . 
R 5 SO4 C 1 605 9 SO4 SO4 . 
S 5 SO4 C 1 606 10 SO4 SO4 . 
T 3 PO4 C 1 607 1 PO4 PO4 . 
U 6 HOH B 1 701 125 HOH HOH . 
U 6 HOH B 2 702 117 HOH HOH . 
U 6 HOH B 3 703 99 HOH HOH . 
U 6 HOH B 4 704 76 HOH HOH . 
U 6 HOH B 5 705 100 HOH HOH . 
U 6 HOH B 6 706 116 HOH HOH . 
U 6 HOH B 7 707 74 HOH HOH . 
U 6 HOH B 8 708 9 HOH HOH . 
U 6 HOH B 9 709 95 HOH HOH . 
U 6 HOH B 10 710 118 HOH HOH . 
U 6 HOH B 11 711 89 HOH HOH . 
U 6 HOH B 12 712 98 HOH HOH . 
U 6 HOH B 13 713 91 HOH HOH . 
U 6 HOH B 14 714 94 HOH HOH . 
U 6 HOH B 15 715 124 HOH HOH . 
V 6 HOH A 1 701 113 HOH HOH . 
V 6 HOH A 2 702 107 HOH HOH . 
V 6 HOH A 3 703 97 HOH HOH . 
V 6 HOH A 4 704 119 HOH HOH . 
V 6 HOH A 5 705 106 HOH HOH . 
V 6 HOH A 6 706 110 HOH HOH . 
V 6 HOH A 7 707 112 HOH HOH . 
V 6 HOH A 8 708 105 HOH HOH . 
V 6 HOH A 9 709 78 HOH HOH . 
V 6 HOH A 10 710 123 HOH HOH . 
V 6 HOH A 11 711 31 HOH HOH . 
V 6 HOH A 12 712 115 HOH HOH . 
V 6 HOH A 13 713 81 HOH HOH . 
V 6 HOH A 14 714 122 HOH HOH . 
V 6 HOH A 15 715 28 HOH HOH . 
V 6 HOH A 16 716 102 HOH HOH . 
V 6 HOH A 17 717 79 HOH HOH . 
V 6 HOH A 18 718 114 HOH HOH . 
V 6 HOH A 19 719 85 HOH HOH . 
V 6 HOH A 20 720 88 HOH HOH . 
V 6 HOH A 21 721 90 HOH HOH . 
W 6 HOH C 1 701 121 HOH HOH . 
W 6 HOH C 2 702 61 HOH HOH . 
W 6 HOH C 3 703 93 HOH HOH . 
W 6 HOH C 4 704 70 HOH HOH . 
W 6 HOH C 5 705 35 HOH HOH . 
W 6 HOH C 6 706 27 HOH HOH . 
W 6 HOH C 7 707 69 HOH HOH . 
W 6 HOH C 8 708 104 HOH HOH . 
W 6 HOH C 9 709 120 HOH HOH . 
W 6 HOH C 10 710 67 HOH HOH . 
W 6 HOH C 11 711 12 HOH HOH . 
W 6 HOH C 12 712 73 HOH HOH . 
W 6 HOH C 13 713 26 HOH HOH . 
W 6 HOH C 14 714 36 HOH HOH . 
W 6 HOH C 15 715 53 HOH HOH . 
W 6 HOH C 16 716 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . R 5 46.995 -8.289 -20.432 1 132.76 ? S SO4 605 C 1 
HETATM 2 O O1 SO4 . . . R 5 47.537 -6.912 -20.588 1 125.3 ? O1 SO4 605 C 1 
HETATM 3 O O2 SO4 . . . R 5 46.312 -8.694 -21.703 1 118.94 ? O2 SO4 605 C 1 
HETATM 4 O O3 SO4 . . . R 5 46.007 -8.346 -19.333 1 126.28 ? O3 SO4 605 C 1 
HETATM 5 O O4 SO4 . . . R 5 48.124 -9.176 -20.033 1 117.6 ? O4 SO4 605 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           440 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#