data_6D3R # _model_server_result.job_id xrqQv9AzH6sx8Ysz5wnS9A _model_server_result.datetime_utc '2025-08-31 06:09:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 6D3R # _exptl.entry_id 6D3R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6D3R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1501 1410 ATP ATP . C 2 ATP A 1 1502 1411 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 128.124 148.21 177.359 1 158.59 ? PG ATP 1501 A 1 HETATM 2 O O1G ATP . . . B 2 126.913 147.262 177.21 1 158.59 ? O1G ATP 1501 A 1 HETATM 3 O O2G ATP . . . B 2 129.23 147.864 176.35 1 158.59 ? O2G ATP 1501 A 1 HETATM 4 O O3G ATP . . . B 2 128.641 148.231 178.81 1 158.59 ? O3G ATP 1501 A 1 HETATM 5 P PB ATP . . . B 2 127.59 150.901 178.033 1 158.59 ? PB ATP 1501 A 1 HETATM 6 O O1B ATP . . . B 2 126.825 150.629 179.32 1 158.59 ? O1B ATP 1501 A 1 HETATM 7 O O2B ATP . . . B 2 128.916 151.623 177.991 1 158.59 ? O2B ATP 1501 A 1 HETATM 8 O O3B ATP . . . B 2 127.505 149.7 176.94 1 158.59 ? O3B ATP 1501 A 1 HETATM 9 P PA ATP . . . B 2 126.969 153.172 176.447 1 158.59 ? PA ATP 1501 A 1 HETATM 10 O O1A ATP . . . B 2 127.711 152.853 175.175 1 158.59 ? O1A ATP 1501 A 1 HETATM 11 O O2A ATP . . . B 2 127.387 154.205 177.451 1 158.59 ? O2A ATP 1501 A 1 HETATM 12 O O3A ATP . . . B 2 126.518 151.828 177.216 1 158.59 ? O3A ATP 1501 A 1 HETATM 13 O O5' ATP . . . B 2 125.403 153.693 176.038 1 158.59 ? O5' ATP 1501 A 1 HETATM 14 C C5' ATP . . . B 2 125.028 153.514 174.703 1 158.59 ? C5' ATP 1501 A 1 HETATM 15 C C4' ATP . . . B 2 123.834 152.592 174.703 1 158.59 ? C4' ATP 1501 A 1 HETATM 16 O O4' ATP . . . B 2 123.269 152.641 173.401 1 158.59 ? O4' ATP 1501 A 1 HETATM 17 C C3' ATP . . . B 2 124.201 151.126 174.961 1 158.59 ? C3' ATP 1501 A 1 HETATM 18 O O3' ATP . . . B 2 123.245 150.535 175.863 1 158.59 ? O3' ATP 1501 A 1 HETATM 19 C C2' ATP . . . B 2 124.342 150.517 173.539 1 158.59 ? C2' ATP 1501 A 1 HETATM 20 O O2' ATP . . . B 2 123.484 149.372 173.414 1 158.59 ? O2' ATP 1501 A 1 HETATM 21 C C1' ATP . . . B 2 123.929 151.72 172.591 1 158.59 ? C1' ATP 1501 A 1 HETATM 22 N N9 ATP . . . B 2 124.886 152.463 171.611 1 158.59 ? N9 ATP 1501 A 1 HETATM 23 C C8 ATP . . . B 2 126.239 152.649 171.663 1 158.59 ? C8 ATP 1501 A 1 HETATM 24 N N7 ATP . . . B 2 126.715 153.436 170.729 1 158.59 ? N7 ATP 1501 A 1 HETATM 25 C C5 ATP . . . B 2 125.64 153.771 170 1 158.59 ? C5 ATP 1501 A 1 HETATM 26 C C6 ATP . . . B 2 125.518 154.591 168.852 1 158.59 ? C6 ATP 1501 A 1 HETATM 27 N N6 ATP . . . B 2 126.603 155.245 168.297 1 158.59 ? N6 ATP 1501 A 1 HETATM 28 N N1 ATP . . . B 2 124.291 154.802 168.312 1 158.59 ? N1 ATP 1501 A 1 HETATM 29 C C2 ATP . . . B 2 123.262 154.209 168.916 1 158.59 ? C2 ATP 1501 A 1 HETATM 30 N N3 ATP . . . B 2 123.232 153.429 170.012 1 158.59 ? N3 ATP 1501 A 1 HETATM 31 C C4 ATP . . . B 2 124.486 153.218 170.514 1 158.59 ? C4 ATP 1501 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 105 _model_server_stats.create_model_time_ms 93 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #