data_6D3V # _model_server_result.job_id 3uDLCRTF6rqdqQdYcKRO7w _model_server_result.datetime_utc '2024-12-26 15:10:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6D3V # _exptl.entry_id 6D3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.6 _cell.angle_gamma 90 _cell.entry_id 6D3V _cell.length_a 74.265 _cell.length_b 66.82 _cell.length_c 75.165 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 2 A HIS 0 1_555 E NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD2 ASP 13 A ASP 11 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 A O ASP 15 A ASP 13 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A NE2 HIS 51 A HIS 49 1_555 E NI NI . A NI 303 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 A OD1 ASP 222 A ASP 220 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 C O ACY . A ACY 301 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc7 E NI NI . A NI 303 1_555 J O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 E NI NI . A NI 303 2_545 B NE2 HIS 2 B HIS 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc9 E NI NI . A NI 303 1_555 B NE2 HIS 51 B HIS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 E NI NI . A NI 303 1_555 K O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 F NI NI . A NI 304 1_555 J O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 F NI NI . A NI 304 1_555 J O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 B OD2 ASP 13 B ASP 11 1_555 G NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc14 B O ASP 15 B ASP 13 1_555 G NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc15 B OD1 ASP 222 B ASP 220 1_555 G NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc16 G NI NI . B NI 301 1_555 H O ACY . B ACY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc17 G NI NI . B NI 301 1_555 K O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc18 G NI NI . B NI 301 1_555 K O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 6D3V _atom_sites.fract_transf_matrix[1][1] 0.013465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY A 1 301 254 ACY ACY . D 3 EDO A 1 302 255 EDO EDO . E 4 NI A 1 303 256 NI NI . F 4 NI A 1 304 253 NI NI . G 4 NI B 1 301 253 NI NI . H 2 ACY B 1 302 254 ACY ACY . I 3 EDO B 1 303 255 EDO EDO . J 5 HOH A 1 401 172 HOH HOH . J 5 HOH A 2 402 205 HOH HOH . J 5 HOH A 3 403 200 HOH HOH . J 5 HOH A 4 404 182 HOH HOH . J 5 HOH A 5 405 32 HOH HOH . J 5 HOH A 6 406 119 HOH HOH . J 5 HOH A 7 407 129 HOH HOH . J 5 HOH A 8 408 192 HOH HOH . J 5 HOH A 9 409 132 HOH HOH . J 5 HOH A 10 410 68 HOH HOH . J 5 HOH A 11 411 180 HOH HOH . J 5 HOH A 12 412 93 HOH HOH . J 5 HOH A 13 413 177 HOH HOH . J 5 HOH A 14 414 63 HOH HOH . J 5 HOH A 15 415 138 HOH HOH . J 5 HOH A 16 416 87 HOH HOH . J 5 HOH A 17 417 62 HOH HOH . J 5 HOH A 18 418 95 HOH HOH . J 5 HOH A 19 419 82 HOH HOH . J 5 HOH A 20 420 52 HOH HOH . J 5 HOH A 21 421 113 HOH HOH . J 5 HOH A 22 422 18 HOH HOH . J 5 HOH A 23 423 34 HOH HOH . J 5 HOH A 24 424 39 HOH HOH . J 5 HOH A 25 425 16 HOH HOH . J 5 HOH A 26 426 43 HOH HOH . J 5 HOH A 27 427 80 HOH HOH . J 5 HOH A 28 428 49 HOH HOH . J 5 HOH A 29 429 159 HOH HOH . J 5 HOH A 30 430 26 HOH HOH . J 5 HOH A 31 431 25 HOH HOH . J 5 HOH A 32 432 162 HOH HOH . J 5 HOH A 33 433 98 HOH HOH . J 5 HOH A 34 434 89 HOH HOH . J 5 HOH A 35 435 73 HOH HOH . J 5 HOH A 36 436 1 HOH HOH . J 5 HOH A 37 437 102 HOH HOH . J 5 HOH A 38 438 94 HOH HOH . J 5 HOH A 39 439 90 HOH HOH . J 5 HOH A 40 440 91 HOH HOH . J 5 HOH A 41 441 104 HOH HOH . J 5 HOH A 42 442 6 HOH HOH . J 5 HOH A 43 443 120 HOH HOH . J 5 HOH A 44 444 188 HOH HOH . J 5 HOH A 45 445 154 HOH HOH . J 5 HOH A 46 446 5 HOH HOH . J 5 HOH A 47 447 13 HOH HOH . J 5 HOH A 48 448 137 HOH HOH . J 5 HOH A 49 449 42 HOH HOH . J 5 HOH A 50 450 145 HOH HOH . J 5 HOH A 51 451 174 HOH HOH . J 5 HOH A 52 452 147 HOH HOH . J 5 HOH A 53 453 53 HOH HOH . J 5 HOH A 54 454 187 HOH HOH . J 5 HOH A 55 455 17 HOH HOH . J 5 HOH A 56 456 103 HOH HOH . J 5 HOH A 57 457 3 HOH HOH . J 5 HOH A 58 458 57 HOH HOH . J 5 HOH A 59 459 47 HOH HOH . J 5 HOH A 60 460 151 HOH HOH . J 5 HOH A 61 461 30 HOH HOH . J 5 HOH A 62 462 206 HOH HOH . J 5 HOH A 63 463 101 HOH HOH . J 5 HOH A 64 464 38 HOH HOH . J 5 HOH A 65 465 149 HOH HOH . J 5 HOH A 66 466 11 HOH HOH . J 5 HOH A 67 467 88 HOH HOH . J 5 HOH A 68 468 85 HOH HOH . J 5 HOH A 69 469 179 HOH HOH . J 5 HOH A 70 470 195 HOH HOH . J 5 HOH A 71 471 170 HOH HOH . J 5 HOH A 72 472 56 HOH HOH . J 5 HOH A 73 473 166 HOH HOH . J 5 HOH A 74 474 54 HOH HOH . J 5 HOH A 75 475 97 HOH HOH . J 5 HOH A 76 476 197 HOH HOH . J 5 HOH A 77 477 28 HOH HOH . J 5 HOH A 78 478 165 HOH HOH . J 5 HOH A 79 479 46 HOH HOH . J 5 HOH A 80 480 190 HOH HOH . J 5 HOH A 81 481 78 HOH HOH . J 5 HOH A 82 482 7 HOH HOH . J 5 HOH A 83 483 130 HOH HOH . J 5 HOH A 84 484 202 HOH HOH . J 5 HOH A 85 485 168 HOH HOH . J 5 HOH A 86 486 117 HOH HOH . J 5 HOH A 87 487 55 HOH HOH . J 5 HOH A 88 488 116 HOH HOH . J 5 HOH A 89 489 44 HOH HOH . J 5 HOH A 90 490 204 HOH HOH . J 5 HOH A 91 491 123 HOH HOH . J 5 HOH A 92 492 20 HOH HOH . J 5 HOH A 93 493 65 HOH HOH . J 5 HOH A 94 494 14 HOH HOH . J 5 HOH A 95 495 99 HOH HOH . J 5 HOH A 96 496 75 HOH HOH . J 5 HOH A 97 497 118 HOH HOH . J 5 HOH A 98 498 157 HOH HOH . J 5 HOH A 99 499 198 HOH HOH . J 5 HOH A 100 500 167 HOH HOH . J 5 HOH A 101 501 126 HOH HOH . K 5 HOH B 1 401 161 HOH HOH . K 5 HOH B 2 402 207 HOH HOH . K 5 HOH B 3 403 77 HOH HOH . K 5 HOH B 4 404 183 HOH HOH . K 5 HOH B 5 405 143 HOH HOH . K 5 HOH B 6 406 9 HOH HOH . K 5 HOH B 7 407 201 HOH HOH . K 5 HOH B 8 408 81 HOH HOH . K 5 HOH B 9 409 83 HOH HOH . K 5 HOH B 10 410 185 HOH HOH . K 5 HOH B 11 411 184 HOH HOH . K 5 HOH B 12 412 163 HOH HOH . K 5 HOH B 13 413 175 HOH HOH . K 5 HOH B 14 414 19 HOH HOH . K 5 HOH B 15 415 191 HOH HOH . K 5 HOH B 16 416 51 HOH HOH . K 5 HOH B 17 417 186 HOH HOH . K 5 HOH B 18 418 84 HOH HOH . K 5 HOH B 19 419 74 HOH HOH . K 5 HOH B 20 420 64 HOH HOH . K 5 HOH B 21 421 156 HOH HOH . K 5 HOH B 22 422 127 HOH HOH . K 5 HOH B 23 423 112 HOH HOH . K 5 HOH B 24 424 133 HOH HOH . K 5 HOH B 25 425 60 HOH HOH . K 5 HOH B 26 426 37 HOH HOH . K 5 HOH B 27 427 136 HOH HOH . K 5 HOH B 28 428 50 HOH HOH . K 5 HOH B 29 429 109 HOH HOH . K 5 HOH B 30 430 21 HOH HOH . K 5 HOH B 31 431 108 HOH HOH . K 5 HOH B 32 432 96 HOH HOH . K 5 HOH B 33 433 40 HOH HOH . K 5 HOH B 34 434 72 HOH HOH . K 5 HOH B 35 435 139 HOH HOH . K 5 HOH B 36 436 70 HOH HOH . K 5 HOH B 37 437 142 HOH HOH . K 5 HOH B 38 438 169 HOH HOH . K 5 HOH B 39 439 58 HOH HOH . K 5 HOH B 40 440 155 HOH HOH . K 5 HOH B 41 441 189 HOH HOH . K 5 HOH B 42 442 22 HOH HOH . K 5 HOH B 43 443 115 HOH HOH . K 5 HOH B 44 444 107 HOH HOH . K 5 HOH B 45 445 33 HOH HOH . K 5 HOH B 46 446 4 HOH HOH . K 5 HOH B 47 447 152 HOH HOH . K 5 HOH B 48 448 66 HOH HOH . K 5 HOH B 49 449 181 HOH HOH . K 5 HOH B 50 450 67 HOH HOH . K 5 HOH B 51 451 10 HOH HOH . K 5 HOH B 52 452 15 HOH HOH . K 5 HOH B 53 453 146 HOH HOH . K 5 HOH B 54 454 105 HOH HOH . K 5 HOH B 55 455 106 HOH HOH . K 5 HOH B 56 456 100 HOH HOH . K 5 HOH B 57 457 92 HOH HOH . K 5 HOH B 58 458 135 HOH HOH . K 5 HOH B 59 459 41 HOH HOH . K 5 HOH B 60 460 141 HOH HOH . K 5 HOH B 61 461 114 HOH HOH . K 5 HOH B 62 462 12 HOH HOH . K 5 HOH B 63 463 24 HOH HOH . K 5 HOH B 64 464 35 HOH HOH . K 5 HOH B 65 465 69 HOH HOH . K 5 HOH B 66 466 2 HOH HOH . K 5 HOH B 67 467 144 HOH HOH . K 5 HOH B 68 468 171 HOH HOH . K 5 HOH B 69 469 29 HOH HOH . K 5 HOH B 70 470 27 HOH HOH . K 5 HOH B 71 471 131 HOH HOH . K 5 HOH B 72 472 148 HOH HOH . K 5 HOH B 73 473 178 HOH HOH . K 5 HOH B 74 474 59 HOH HOH . K 5 HOH B 75 475 176 HOH HOH . K 5 HOH B 76 476 76 HOH HOH . K 5 HOH B 77 477 111 HOH HOH . K 5 HOH B 78 478 36 HOH HOH . K 5 HOH B 79 479 134 HOH HOH . K 5 HOH B 80 480 48 HOH HOH . K 5 HOH B 81 481 23 HOH HOH . K 5 HOH B 82 482 8 HOH HOH . K 5 HOH B 83 483 79 HOH HOH . K 5 HOH B 84 484 86 HOH HOH . K 5 HOH B 85 485 140 HOH HOH . K 5 HOH B 86 486 160 HOH HOH . K 5 HOH B 87 487 71 HOH HOH . K 5 HOH B 88 488 110 HOH HOH . K 5 HOH B 89 489 128 HOH HOH . K 5 HOH B 90 490 194 HOH HOH . K 5 HOH B 91 491 31 HOH HOH . K 5 HOH B 92 492 173 HOH HOH . K 5 HOH B 93 493 158 HOH HOH . K 5 HOH B 94 494 121 HOH HOH . K 5 HOH B 95 495 203 HOH HOH . K 5 HOH B 96 496 45 HOH HOH . K 5 HOH B 97 497 124 HOH HOH . K 5 HOH B 98 498 122 HOH HOH . K 5 HOH B 99 499 61 HOH HOH . K 5 HOH B 100 500 164 HOH HOH . K 5 HOH B 101 501 193 HOH HOH . K 5 HOH B 102 502 150 HOH HOH . K 5 HOH B 103 503 153 HOH HOH . K 5 HOH B 104 504 196 HOH HOH . K 5 HOH B 105 505 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -21.863 19.245 -4.081 1 67.94 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 -21.786 17.873 -4.318 1 68.13 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 -21.723 19.941 -5.429 1 67.09 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 -21.715 21.318 -5.19 1 66.7 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #