data_6D3W # _model_server_result.job_id 1TKL7sZrrRHDS_bOdzsQTA _model_server_result.datetime_utc '2024-12-21 16:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6D3W # _exptl.entry_id 6D3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.48 _cell.angle_gamma 90 _cell.entry_id 6D3W _cell.length_a 74.03 _cell.length_b 66.847 _cell.length_c 75.263 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 11 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc2 A OD2 ASP 13 A ASP 11 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A O ASP 15 A ASP 13 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 A OD1 ASP 222 A ASP 220 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 C CA CA . A CA 301 1_555 D O ACY . A ACY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 C CA CA . A CA 301 1_555 M O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc7 C CA CA . A CA 301 1_555 M O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 B OD1 ASP 13 B ASP 11 1_555 H CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc9 B OD2 ASP 13 B ASP 11 1_555 H CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 B O ASP 15 B ASP 13 1_555 H CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc11 B OD1 ASP 222 B ASP 220 1_555 H CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc12 H CA CA . B CA 301 1_555 I O ACY . B ACY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 H CA CA . B CA 301 1_555 N O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc14 H CA CA . B CA 301 1_555 N O HOH . B HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 6D3W _atom_sites.fract_transf_matrix[1][1] 0.013508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007635 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 253 CA CA . D 3 ACY A 1 302 254 ACY ACY . E 4 EDO A 1 303 255 EDO EDO . F 4 EDO A 1 304 256 EDO EDO . G 4 EDO A 1 305 257 EDO EDO . H 2 CA B 1 301 253 CA CA . I 3 ACY B 1 302 254 ACY ACY . J 4 EDO B 1 303 255 EDO EDO . K 4 EDO B 1 304 256 EDO EDO . L 4 EDO B 1 305 257 EDO EDO . M 5 HOH A 1 401 199 HOH HOH . M 5 HOH A 2 402 136 HOH HOH . M 5 HOH A 3 403 223 HOH HOH . M 5 HOH A 4 404 1 HOH HOH . M 5 HOH A 5 405 121 HOH HOH . M 5 HOH A 6 406 193 HOH HOH . M 5 HOH A 7 407 181 HOH HOH . M 5 HOH A 8 408 68 HOH HOH . M 5 HOH A 9 409 63 HOH HOH . M 5 HOH A 10 410 32 HOH HOH . M 5 HOH A 11 411 151 HOH HOH . M 5 HOH A 12 412 144 HOH HOH . M 5 HOH A 13 413 89 HOH HOH . M 5 HOH A 14 414 33 HOH HOH . M 5 HOH A 15 415 102 HOH HOH . M 5 HOH A 16 416 69 HOH HOH . M 5 HOH A 17 417 22 HOH HOH . M 5 HOH A 18 418 65 HOH HOH . M 5 HOH A 19 419 108 HOH HOH . M 5 HOH A 20 420 12 HOH HOH . M 5 HOH A 21 421 14 HOH HOH . M 5 HOH A 22 422 215 HOH HOH . M 5 HOH A 23 423 97 HOH HOH . M 5 HOH A 24 424 8 HOH HOH . M 5 HOH A 25 425 156 HOH HOH . M 5 HOH A 26 426 2 HOH HOH . M 5 HOH A 27 427 50 HOH HOH . M 5 HOH A 28 428 220 HOH HOH . M 5 HOH A 29 429 42 HOH HOH . M 5 HOH A 30 430 130 HOH HOH . M 5 HOH A 31 431 62 HOH HOH . M 5 HOH A 32 432 6 HOH HOH . M 5 HOH A 33 433 100 HOH HOH . M 5 HOH A 34 434 161 HOH HOH . M 5 HOH A 35 435 39 HOH HOH . M 5 HOH A 36 436 41 HOH HOH . M 5 HOH A 37 437 61 HOH HOH . M 5 HOH A 38 438 137 HOH HOH . M 5 HOH A 39 439 59 HOH HOH . M 5 HOH A 40 440 197 HOH HOH . M 5 HOH A 41 441 218 HOH HOH . M 5 HOH A 42 442 195 HOH HOH . M 5 HOH A 43 443 91 HOH HOH . M 5 HOH A 44 444 21 HOH HOH . M 5 HOH A 45 445 85 HOH HOH . M 5 HOH A 46 446 94 HOH HOH . M 5 HOH A 47 447 127 HOH HOH . M 5 HOH A 48 448 67 HOH HOH . M 5 HOH A 49 449 183 HOH HOH . M 5 HOH A 50 450 99 HOH HOH . M 5 HOH A 51 451 147 HOH HOH . M 5 HOH A 52 452 109 HOH HOH . M 5 HOH A 53 453 28 HOH HOH . M 5 HOH A 54 454 174 HOH HOH . M 5 HOH A 55 455 93 HOH HOH . M 5 HOH A 56 456 49 HOH HOH . M 5 HOH A 57 457 48 HOH HOH . M 5 HOH A 58 458 162 HOH HOH . M 5 HOH A 59 459 211 HOH HOH . M 5 HOH A 60 460 36 HOH HOH . M 5 HOH A 61 461 186 HOH HOH . M 5 HOH A 62 462 95 HOH HOH . M 5 HOH A 63 463 70 HOH HOH . M 5 HOH A 64 464 204 HOH HOH . M 5 HOH A 65 465 38 HOH HOH . M 5 HOH A 66 466 10 HOH HOH . M 5 HOH A 67 467 206 HOH HOH . M 5 HOH A 68 468 222 HOH HOH . M 5 HOH A 69 469 15 HOH HOH . M 5 HOH A 70 470 171 HOH HOH . M 5 HOH A 71 471 179 HOH HOH . M 5 HOH A 72 472 154 HOH HOH . M 5 HOH A 73 473 55 HOH HOH . M 5 HOH A 74 474 87 HOH HOH . M 5 HOH A 75 475 44 HOH HOH . M 5 HOH A 76 476 184 HOH HOH . M 5 HOH A 77 477 166 HOH HOH . M 5 HOH A 78 478 133 HOH HOH . M 5 HOH A 79 479 19 HOH HOH . M 5 HOH A 80 480 167 HOH HOH . M 5 HOH A 81 481 86 HOH HOH . M 5 HOH A 82 482 173 HOH HOH . M 5 HOH A 83 483 139 HOH HOH . M 5 HOH A 84 484 224 HOH HOH . M 5 HOH A 85 485 24 HOH HOH . M 5 HOH A 86 486 125 HOH HOH . M 5 HOH A 87 487 209 HOH HOH . M 5 HOH A 88 488 18 HOH HOH . M 5 HOH A 89 489 107 HOH HOH . M 5 HOH A 90 490 200 HOH HOH . M 5 HOH A 91 491 106 HOH HOH . M 5 HOH A 92 492 225 HOH HOH . M 5 HOH A 93 493 129 HOH HOH . M 5 HOH A 94 494 192 HOH HOH . M 5 HOH A 95 495 191 HOH HOH . M 5 HOH A 96 496 7 HOH HOH . M 5 HOH A 97 497 126 HOH HOH . M 5 HOH A 98 498 150 HOH HOH . M 5 HOH A 99 499 53 HOH HOH . M 5 HOH A 100 500 203 HOH HOH . M 5 HOH A 101 501 168 HOH HOH . M 5 HOH A 102 502 153 HOH HOH . M 5 HOH A 103 503 210 HOH HOH . M 5 HOH A 104 504 56 HOH HOH . M 5 HOH A 105 505 201 HOH HOH . M 5 HOH A 106 506 101 HOH HOH . M 5 HOH A 107 507 140 HOH HOH . M 5 HOH A 108 508 57 HOH HOH . M 5 HOH A 109 509 76 HOH HOH . M 5 HOH A 110 510 134 HOH HOH . M 5 HOH A 111 511 180 HOH HOH . M 5 HOH A 112 512 158 HOH HOH . M 5 HOH A 113 513 198 HOH HOH . M 5 HOH A 114 514 123 HOH HOH . N 5 HOH B 1 401 219 HOH HOH . N 5 HOH B 2 402 116 HOH HOH . N 5 HOH B 3 403 187 HOH HOH . N 5 HOH B 4 404 114 HOH HOH . N 5 HOH B 5 405 4 HOH HOH . N 5 HOH B 6 406 185 HOH HOH . N 5 HOH B 7 407 35 HOH HOH . N 5 HOH B 8 408 189 HOH HOH . N 5 HOH B 9 409 141 HOH HOH . N 5 HOH B 10 410 27 HOH HOH . N 5 HOH B 11 411 110 HOH HOH . N 5 HOH B 12 412 159 HOH HOH . N 5 HOH B 13 413 205 HOH HOH . N 5 HOH B 14 414 51 HOH HOH . N 5 HOH B 15 415 115 HOH HOH . N 5 HOH B 16 416 90 HOH HOH . N 5 HOH B 17 417 78 HOH HOH . N 5 HOH B 18 418 45 HOH HOH . N 5 HOH B 19 419 135 HOH HOH . N 5 HOH B 20 420 26 HOH HOH . N 5 HOH B 21 421 3 HOH HOH . N 5 HOH B 22 422 5 HOH HOH . N 5 HOH B 23 423 103 HOH HOH . N 5 HOH B 24 424 74 HOH HOH . N 5 HOH B 25 425 13 HOH HOH . N 5 HOH B 26 426 52 HOH HOH . N 5 HOH B 27 427 64 HOH HOH . N 5 HOH B 28 428 17 HOH HOH . N 5 HOH B 29 429 152 HOH HOH . N 5 HOH B 30 430 43 HOH HOH . N 5 HOH B 31 431 9 HOH HOH . N 5 HOH B 32 432 128 HOH HOH . N 5 HOH B 33 433 172 HOH HOH . N 5 HOH B 34 434 66 HOH HOH . N 5 HOH B 35 435 80 HOH HOH . N 5 HOH B 36 436 112 HOH HOH . N 5 HOH B 37 437 84 HOH HOH . N 5 HOH B 38 438 71 HOH HOH . N 5 HOH B 39 439 118 HOH HOH . N 5 HOH B 40 440 58 HOH HOH . N 5 HOH B 41 441 117 HOH HOH . N 5 HOH B 42 442 221 HOH HOH . N 5 HOH B 43 443 34 HOH HOH . N 5 HOH B 44 444 227 HOH HOH . N 5 HOH B 45 445 155 HOH HOH . N 5 HOH B 46 446 208 HOH HOH . N 5 HOH B 47 447 120 HOH HOH . N 5 HOH B 48 448 188 HOH HOH . N 5 HOH B 49 449 83 HOH HOH . N 5 HOH B 50 450 37 HOH HOH . N 5 HOH B 51 451 98 HOH HOH . N 5 HOH B 52 452 72 HOH HOH . N 5 HOH B 53 453 30 HOH HOH . N 5 HOH B 54 454 40 HOH HOH . N 5 HOH B 55 455 196 HOH HOH . N 5 HOH B 56 456 54 HOH HOH . N 5 HOH B 57 457 138 HOH HOH . N 5 HOH B 58 458 214 HOH HOH . N 5 HOH B 59 459 11 HOH HOH . N 5 HOH B 60 460 23 HOH HOH . N 5 HOH B 61 461 149 HOH HOH . N 5 HOH B 62 462 105 HOH HOH . N 5 HOH B 63 463 164 HOH HOH . N 5 HOH B 64 464 88 HOH HOH . N 5 HOH B 65 465 31 HOH HOH . N 5 HOH B 66 466 92 HOH HOH . N 5 HOH B 67 467 60 HOH HOH . N 5 HOH B 68 468 216 HOH HOH . N 5 HOH B 69 469 176 HOH HOH . N 5 HOH B 70 470 16 HOH HOH . N 5 HOH B 71 471 20 HOH HOH . N 5 HOH B 72 472 212 HOH HOH . N 5 HOH B 73 473 182 HOH HOH . N 5 HOH B 74 474 217 HOH HOH . N 5 HOH B 75 475 81 HOH HOH . N 5 HOH B 76 476 213 HOH HOH . N 5 HOH B 77 477 160 HOH HOH . N 5 HOH B 78 478 169 HOH HOH . N 5 HOH B 79 479 96 HOH HOH . N 5 HOH B 80 480 25 HOH HOH . N 5 HOH B 81 481 157 HOH HOH . N 5 HOH B 82 482 143 HOH HOH . N 5 HOH B 83 483 46 HOH HOH . N 5 HOH B 84 484 29 HOH HOH . N 5 HOH B 85 485 163 HOH HOH . N 5 HOH B 86 486 111 HOH HOH . N 5 HOH B 87 487 119 HOH HOH . N 5 HOH B 88 488 132 HOH HOH . N 5 HOH B 89 489 77 HOH HOH . N 5 HOH B 90 490 124 HOH HOH . N 5 HOH B 91 491 82 HOH HOH . N 5 HOH B 92 492 175 HOH HOH . N 5 HOH B 93 493 148 HOH HOH . N 5 HOH B 94 494 113 HOH HOH . N 5 HOH B 95 495 190 HOH HOH . N 5 HOH B 96 496 194 HOH HOH . N 5 HOH B 97 497 178 HOH HOH . N 5 HOH B 98 498 75 HOH HOH . N 5 HOH B 99 499 170 HOH HOH . N 5 HOH B 100 500 177 HOH HOH . N 5 HOH B 101 501 145 HOH HOH . N 5 HOH B 102 502 207 HOH HOH . N 5 HOH B 103 503 202 HOH HOH . N 5 HOH B 104 504 73 HOH HOH . N 5 HOH B 105 505 104 HOH HOH . N 5 HOH B 106 506 131 HOH HOH . N 5 HOH B 107 507 226 HOH HOH . N 5 HOH B 108 508 47 HOH HOH . N 5 HOH B 109 509 122 HOH HOH . N 5 HOH B 110 510 79 HOH HOH . N 5 HOH B 111 511 165 HOH HOH . N 5 HOH B 112 512 146 HOH HOH . N 5 HOH B 113 513 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 71.28 -14.126 11.296 1 38.63 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . E 4 72.611 -14.206 11.727 1 35.89 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . E 4 71.248 -14.461 9.81 1 40.96 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . E 4 71.928 -15.672 9.612 1 43.48 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1051 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #