data_6D3Y
#
_model_server_result.job_id            ADIaDTU76FORXbe1IZnmfA 
_model_server_result.datetime_utc      '2024-11-22 09:45:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    6D3Y 
#
_exptl.entry_id    6D3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.63 
_cell.angle_gamma         90 
_cell.entry_id            6D3Y 
_cell.length_a            85.905 
_cell.length_b            41.506 
_cell.length_c            79.527 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 548 1_555 A SG CYS 122 A CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf2 A SG CYS 14 A CYS 558 1_555 A SG CYS 22 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 44 A CYS 588 1_555 A SG CYS 60 A CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf4 A SG CYS 136 A CYS 680 1_555 A SG CYS 203 A CYS 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 A SG CYS 166 A CYS 710 1_555 A SG CYS 182 A CYS 726 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 A SG CYS 166 A CYS 710 1_555 A SG CYS 182 A CYS 726 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf7 A SG CYS 193 A CYS 737 1_555 A SG CYS 221 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf8 B SG CYS 3 C CYS 3 1_555 B SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6D3Y 
_atom_sites.fract_transf_matrix[1][1]    0.011641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004153 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 801 1 SO4 SO4 . 
D 4 GOL C 1 101 2 GOL GOL . 
E 4 GOL C 1 102 3 GOL GOL . 
F 5 HOH A 1 901 150 HOH HOH . 
F 5 HOH A 2 902 75 HOH HOH . 
F 5 HOH A 3 903 78 HOH HOH . 
F 5 HOH A 4 904 60 HOH HOH . 
F 5 HOH A 5 905 99 HOH HOH . 
F 5 HOH A 6 906 108 HOH HOH . 
F 5 HOH A 7 907 158 HOH HOH . 
F 5 HOH A 8 908 84 HOH HOH . 
F 5 HOH A 9 909 57 HOH HOH . 
F 5 HOH A 10 910 47 HOH HOH . 
F 5 HOH A 11 911 105 HOH HOH . 
F 5 HOH A 12 912 16 HOH HOH . 
F 5 HOH A 13 913 63 HOH HOH . 
F 5 HOH A 14 914 116 HOH HOH . 
F 5 HOH A 15 915 107 HOH HOH . 
F 5 HOH A 16 916 44 HOH HOH . 
F 5 HOH A 17 917 97 HOH HOH . 
F 5 HOH A 18 918 129 HOH HOH . 
F 5 HOH A 19 919 19 HOH HOH . 
F 5 HOH A 20 920 13 HOH HOH . 
F 5 HOH A 21 921 95 HOH HOH . 
F 5 HOH A 22 922 148 HOH HOH . 
F 5 HOH A 23 923 100 HOH HOH . 
F 5 HOH A 24 924 9 HOH HOH . 
F 5 HOH A 25 925 8 HOH HOH . 
F 5 HOH A 26 926 76 HOH HOH . 
F 5 HOH A 27 927 90 HOH HOH . 
F 5 HOH A 28 928 117 HOH HOH . 
F 5 HOH A 29 929 25 HOH HOH . 
F 5 HOH A 30 930 53 HOH HOH . 
F 5 HOH A 31 931 23 HOH HOH . 
F 5 HOH A 32 932 65 HOH HOH . 
F 5 HOH A 33 933 66 HOH HOH . 
F 5 HOH A 34 934 112 HOH HOH . 
F 5 HOH A 35 935 86 HOH HOH . 
F 5 HOH A 36 936 17 HOH HOH . 
F 5 HOH A 37 937 77 HOH HOH . 
F 5 HOH A 38 938 147 HOH HOH . 
F 5 HOH A 39 939 130 HOH HOH . 
F 5 HOH A 40 940 67 HOH HOH . 
F 5 HOH A 41 941 88 HOH HOH . 
F 5 HOH A 42 942 102 HOH HOH . 
F 5 HOH A 43 943 7 HOH HOH . 
F 5 HOH A 44 944 168 HOH HOH . 
F 5 HOH A 45 945 49 HOH HOH . 
F 5 HOH A 46 946 92 HOH HOH . 
F 5 HOH A 47 947 121 HOH HOH . 
F 5 HOH A 48 948 164 HOH HOH . 
F 5 HOH A 49 949 38 HOH HOH . 
F 5 HOH A 50 950 14 HOH HOH . 
F 5 HOH A 51 951 12 HOH HOH . 
F 5 HOH A 52 952 43 HOH HOH . 
F 5 HOH A 53 953 61 HOH HOH . 
F 5 HOH A 54 954 151 HOH HOH . 
F 5 HOH A 55 955 82 HOH HOH . 
F 5 HOH A 56 956 22 HOH HOH . 
F 5 HOH A 57 957 94 HOH HOH . 
F 5 HOH A 58 958 2 HOH HOH . 
F 5 HOH A 59 959 153 HOH HOH . 
F 5 HOH A 60 960 28 HOH HOH . 
F 5 HOH A 61 961 109 HOH HOH . 
F 5 HOH A 62 962 27 HOH HOH . 
F 5 HOH A 63 963 118 HOH HOH . 
F 5 HOH A 64 964 10 HOH HOH . 
F 5 HOH A 65 965 79 HOH HOH . 
F 5 HOH A 66 966 54 HOH HOH . 
F 5 HOH A 67 967 48 HOH HOH . 
F 5 HOH A 68 968 133 HOH HOH . 
F 5 HOH A 69 969 73 HOH HOH . 
F 5 HOH A 70 970 119 HOH HOH . 
F 5 HOH A 71 971 35 HOH HOH . 
F 5 HOH A 72 972 52 HOH HOH . 
F 5 HOH A 73 973 114 HOH HOH . 
F 5 HOH A 74 974 51 HOH HOH . 
F 5 HOH A 75 975 1 HOH HOH . 
F 5 HOH A 76 976 69 HOH HOH . 
F 5 HOH A 77 977 39 HOH HOH . 
F 5 HOH A 78 978 104 HOH HOH . 
F 5 HOH A 79 979 132 HOH HOH . 
F 5 HOH A 80 980 103 HOH HOH . 
F 5 HOH A 81 981 15 HOH HOH . 
F 5 HOH A 82 982 124 HOH HOH . 
F 5 HOH A 83 983 141 HOH HOH . 
F 5 HOH A 84 984 155 HOH HOH . 
F 5 HOH A 85 985 174 HOH HOH . 
F 5 HOH A 86 986 32 HOH HOH . 
F 5 HOH A 87 987 91 HOH HOH . 
F 5 HOH A 88 988 5 HOH HOH . 
F 5 HOH A 89 989 50 HOH HOH . 
F 5 HOH A 90 990 20 HOH HOH . 
F 5 HOH A 91 991 26 HOH HOH . 
F 5 HOH A 92 992 146 HOH HOH . 
F 5 HOH A 93 993 68 HOH HOH . 
F 5 HOH A 94 994 72 HOH HOH . 
F 5 HOH A 95 995 81 HOH HOH . 
F 5 HOH A 96 996 122 HOH HOH . 
F 5 HOH A 97 997 4 HOH HOH . 
F 5 HOH A 98 998 64 HOH HOH . 
F 5 HOH A 99 999 106 HOH HOH . 
F 5 HOH A 100 1000 144 HOH HOH . 
F 5 HOH A 101 1001 29 HOH HOH . 
F 5 HOH A 102 1002 6 HOH HOH . 
F 5 HOH A 103 1003 33 HOH HOH . 
F 5 HOH A 104 1004 3 HOH HOH . 
F 5 HOH A 105 1005 131 HOH HOH . 
F 5 HOH A 106 1006 157 HOH HOH . 
F 5 HOH A 107 1007 89 HOH HOH . 
F 5 HOH A 108 1008 11 HOH HOH . 
F 5 HOH A 109 1009 58 HOH HOH . 
F 5 HOH A 110 1010 30 HOH HOH . 
F 5 HOH A 111 1011 96 HOH HOH . 
F 5 HOH A 112 1012 159 HOH HOH . 
F 5 HOH A 113 1013 56 HOH HOH . 
F 5 HOH A 114 1014 24 HOH HOH . 
F 5 HOH A 115 1015 37 HOH HOH . 
F 5 HOH A 116 1016 71 HOH HOH . 
F 5 HOH A 117 1017 162 HOH HOH . 
F 5 HOH A 118 1018 59 HOH HOH . 
F 5 HOH A 119 1019 45 HOH HOH . 
F 5 HOH A 120 1020 41 HOH HOH . 
F 5 HOH A 121 1021 165 HOH HOH . 
F 5 HOH A 122 1022 152 HOH HOH . 
F 5 HOH A 123 1023 83 HOH HOH . 
F 5 HOH A 124 1024 135 HOH HOH . 
F 5 HOH A 125 1025 87 HOH HOH . 
F 5 HOH A 126 1026 62 HOH HOH . 
F 5 HOH A 127 1027 80 HOH HOH . 
F 5 HOH A 128 1028 85 HOH HOH . 
F 5 HOH A 129 1029 46 HOH HOH . 
F 5 HOH A 130 1030 149 HOH HOH . 
F 5 HOH A 131 1031 55 HOH HOH . 
F 5 HOH A 132 1032 21 HOH HOH . 
F 5 HOH A 133 1033 93 HOH HOH . 
F 5 HOH A 134 1034 101 HOH HOH . 
F 5 HOH A 135 1035 115 HOH HOH . 
F 5 HOH A 136 1036 136 HOH HOH . 
F 5 HOH A 137 1037 110 HOH HOH . 
F 5 HOH A 138 1038 113 HOH HOH . 
F 5 HOH A 139 1039 126 HOH HOH . 
F 5 HOH A 140 1040 160 HOH HOH . 
F 5 HOH A 141 1041 137 HOH HOH . 
F 5 HOH A 142 1042 125 HOH HOH . 
F 5 HOH A 143 1043 128 HOH HOH . 
F 5 HOH A 144 1044 138 HOH HOH . 
F 5 HOH A 145 1045 74 HOH HOH . 
F 5 HOH A 146 1046 140 HOH HOH . 
F 5 HOH A 147 1047 163 HOH HOH . 
F 5 HOH A 148 1048 167 HOH HOH . 
F 5 HOH A 149 1049 142 HOH HOH . 
F 5 HOH A 150 1050 127 HOH HOH . 
F 5 HOH A 151 1051 156 HOH HOH . 
F 5 HOH A 152 1052 170 HOH HOH . 
F 5 HOH A 153 1053 169 HOH HOH . 
F 5 HOH A 154 1054 70 HOH HOH . 
F 5 HOH A 155 1055 123 HOH HOH . 
F 5 HOH A 156 1056 139 HOH HOH . 
G 5 HOH C 1 201 111 HOH HOH . 
G 5 HOH C 2 202 34 HOH HOH . 
G 5 HOH C 3 203 36 HOH HOH . 
G 5 HOH C 4 204 161 HOH HOH . 
G 5 HOH C 5 205 172 HOH HOH . 
G 5 HOH C 6 206 31 HOH HOH . 
G 5 HOH C 7 207 143 HOH HOH . 
G 5 HOH C 8 208 154 HOH HOH . 
G 5 HOH C 9 209 42 HOH HOH . 
G 5 HOH C 10 210 18 HOH HOH . 
G 5 HOH C 11 211 40 HOH HOH . 
G 5 HOH C 12 212 171 HOH HOH . 
G 5 HOH C 13 213 98 HOH HOH . 
G 5 HOH C 14 214 173 HOH HOH . 
G 5 HOH C 15 215 120 HOH HOH . 
G 5 HOH C 16 216 134 HOH HOH . 
G 5 HOH C 17 217 145 HOH HOH . 
G 5 HOH C 18 218 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -9.416 7.929 34.316 1 19.65 ? C1 GOL 101 C 1 
HETATM 2 O O1 GOL . . . D 4 -10.743 7.77 34.664 1 19.65 ? O1 GOL 101 C 1 
HETATM 3 C C2 GOL . . . D 4 -8.614 6.696 34.839 1 19.65 ? C2 GOL 101 C 1 
HETATM 4 O O2 GOL . . . D 4 -9.095 6.187 36.053 1 19.65 ? O2 GOL 101 C 1 
HETATM 5 C C3 GOL . . . D 4 -8.678 5.664 33.707 1 19.65 ? C3 GOL 101 C 1 
HETATM 6 O O3 GOL . . . D 4 -7.742 4.688 33.998 1 19.65 ? O3 GOL 101 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#