data_6D42 # _model_server_result.job_id PqGQOkglrA3W3j4v-jO-8Q _model_server_result.datetime_utc '2025-09-01 00:10:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6D42 # _exptl.entry_id 6D42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D42 _cell.length_a 37.59 _cell.length_b 37.59 _cell.length_c 116.946 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall 'P 4ab 2ab' _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,4,6 B,D,F 2 1,3,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 37.59 0 0 3 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 75.18 37.59 0 4 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 18.795 -18.795 0 5 'crystal symmetry operation' 3_645 -y+3/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 56.385 -18.795 0 6 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 18.795 18.795 0 7 'crystal symmetry operation' 4_565 y+1/2,-x+3/2,z 0 1 0 -1 0 0 0 0 1 18.795 56.385 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 3 A MSE 376 1_555 A N ILE 4 A ILE 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C MSE 3 B MSE 376 1_555 B N ILE 4 B ILE 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 16 A HIS 389 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A NE2 HIS 16 A HIS 389 1_555 C CU CU . A CU 501 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 C CU CU . A CU 501 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 C CU CU . A CU 501 1_555 E O HOH . A HOH 623 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 B NE2 HIS 16 B HIS 389 1_555 D CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 B NE2 HIS 16 B HIS 389 1_555 D CU CU . B CU 501 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc7 D CU CU . B CU 501 1_555 F O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 D CU CU . B CU 501 1_555 F O HOH . B HOH 610 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6D42 _atom_sites.fract_transf_matrix[1][1] 0.026603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 501 1 CU CU . D 2 CU B 1 501 2 CU CU . E 3 HOH A 1 601 58 HOH HOH . E 3 HOH A 2 602 26 HOH HOH . E 3 HOH A 3 603 12 HOH HOH . E 3 HOH A 4 604 9 HOH HOH . E 3 HOH A 5 605 48 HOH HOH . E 3 HOH A 6 606 13 HOH HOH . E 3 HOH A 7 607 28 HOH HOH . E 3 HOH A 8 608 14 HOH HOH . E 3 HOH A 9 609 38 HOH HOH . E 3 HOH A 10 610 10 HOH HOH . E 3 HOH A 11 611 22 HOH HOH . E 3 HOH A 12 612 4 HOH HOH . E 3 HOH A 13 613 16 HOH HOH . E 3 HOH A 14 614 29 HOH HOH . E 3 HOH A 15 615 1 HOH HOH . E 3 HOH A 16 616 19 HOH HOH . E 3 HOH A 17 617 34 HOH HOH . E 3 HOH A 18 618 53 HOH HOH . E 3 HOH A 19 619 23 HOH HOH . E 3 HOH A 20 620 52 HOH HOH . E 3 HOH A 21 621 37 HOH HOH . E 3 HOH A 22 622 11 HOH HOH . E 3 HOH A 23 623 3 HOH HOH . E 3 HOH A 24 624 49 HOH HOH . E 3 HOH A 25 625 56 HOH HOH . E 3 HOH A 26 626 24 HOH HOH . E 3 HOH A 27 627 39 HOH HOH . E 3 HOH A 28 628 50 HOH HOH . F 3 HOH B 1 601 35 HOH HOH . F 3 HOH B 2 602 7 HOH HOH . F 3 HOH B 3 603 42 HOH HOH . F 3 HOH B 4 604 15 HOH HOH . F 3 HOH B 5 605 6 HOH HOH . F 3 HOH B 6 606 5 HOH HOH . F 3 HOH B 7 607 43 HOH HOH . F 3 HOH B 8 608 27 HOH HOH . F 3 HOH B 9 609 17 HOH HOH . F 3 HOH B 10 610 2 HOH HOH . F 3 HOH B 11 611 55 HOH HOH . F 3 HOH B 12 612 30 HOH HOH . F 3 HOH B 13 613 51 HOH HOH . F 3 HOH B 14 614 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.795 _atom_site.Cartn_y 0 _atom_site.Cartn_z 5.14 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 29.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #