data_6D49 # _model_server_result.job_id C0HijHjm7b9MLBHr1eBIKA _model_server_result.datetime_utc '2025-03-09 02:09:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6D49 # _exptl.entry_id 6D49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.97 _cell.angle_gamma 90 _cell.entry_id 6D49 _cell.length_a 29.369 _cell.length_b 68.765 _cell.length_c 73.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 36 1_555 B SG CYS 20 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 25 A CYS 41 1_555 A SG CYS 85 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 25 B CYS 41 1_555 B SG CYS 85 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 266 n n C1 C2 GOL sing 267 n n C1 H11 GOL sing 268 n n C1 H12 GOL sing 269 n n O1 HO1 GOL sing 270 n n C2 O2 GOL sing 271 n n C2 C3 GOL sing 272 n n C2 H2 GOL sing 273 n n O2 HO2 GOL sing 274 n n C3 O3 GOL sing 275 n n C3 H31 GOL sing 276 n n C3 H32 GOL sing 277 n n O3 HO3 GOL sing 278 n n # _atom_sites.entry_id 6D49 _atom_sites.fract_transf_matrix[1][1] 0.03405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004164 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 1 GOL GOL . D 2 GOL A 1 202 3 GOL GOL . E 2 GOL A 1 203 5 GOL GOL . F 2 GOL A 1 204 8 GOL GOL . G 3 FVP A 1 205 1 FVP LIG . H 2 GOL B 1 201 2 GOL GOL . I 2 GOL B 1 202 4 GOL GOL . J 2 GOL B 1 203 6 GOL GOL . K 2 GOL B 1 204 7 GOL GOL . L 2 GOL B 1 205 9 GOL GOL . M 3 FVP B 1 206 1 FVP LIG . N 4 HOH A 1 301 251 HOH HOH . N 4 HOH A 2 302 250 HOH HOH . N 4 HOH A 3 303 246 HOH HOH . N 4 HOH A 4 304 271 HOH HOH . N 4 HOH A 5 305 218 HOH HOH . N 4 HOH A 6 306 48 HOH HOH . N 4 HOH A 7 307 108 HOH HOH . N 4 HOH A 8 308 74 HOH HOH . N 4 HOH A 9 309 262 HOH HOH . N 4 HOH A 10 310 256 HOH HOH . N 4 HOH A 11 311 274 HOH HOH . N 4 HOH A 12 312 190 HOH HOH . N 4 HOH A 13 313 96 HOH HOH . N 4 HOH A 14 314 39 HOH HOH . N 4 HOH A 15 315 106 HOH HOH . N 4 HOH A 16 316 263 HOH HOH . N 4 HOH A 17 317 229 HOH HOH . N 4 HOH A 18 318 265 HOH HOH . N 4 HOH A 19 319 231 HOH HOH . N 4 HOH A 20 320 91 HOH HOH . N 4 HOH A 21 321 94 HOH HOH . N 4 HOH A 22 322 61 HOH HOH . N 4 HOH A 23 323 132 HOH HOH . N 4 HOH A 24 324 124 HOH HOH . N 4 HOH A 25 325 258 HOH HOH . N 4 HOH A 26 326 197 HOH HOH . N 4 HOH A 27 327 69 HOH HOH . N 4 HOH A 28 328 19 HOH HOH . N 4 HOH A 29 329 129 HOH HOH . N 4 HOH A 30 330 102 HOH HOH . N 4 HOH A 31 331 268 HOH HOH . N 4 HOH A 32 332 20 HOH HOH . N 4 HOH A 33 333 7 HOH HOH . N 4 HOH A 34 334 12 HOH HOH . N 4 HOH A 35 335 133 HOH HOH . N 4 HOH A 36 336 1 HOH HOH . N 4 HOH A 37 337 82 HOH HOH . N 4 HOH A 38 338 18 HOH HOH . N 4 HOH A 39 339 59 HOH HOH . N 4 HOH A 40 340 114 HOH HOH . N 4 HOH A 41 341 128 HOH HOH . N 4 HOH A 42 342 111 HOH HOH . N 4 HOH A 43 343 21 HOH HOH . N 4 HOH A 44 344 2 HOH HOH . N 4 HOH A 45 345 109 HOH HOH . N 4 HOH A 46 346 37 HOH HOH . N 4 HOH A 47 347 8 HOH HOH . N 4 HOH A 48 348 107 HOH HOH . N 4 HOH A 49 349 118 HOH HOH . N 4 HOH A 50 350 51 HOH HOH . N 4 HOH A 51 351 77 HOH HOH . N 4 HOH A 52 352 5 HOH HOH . N 4 HOH A 53 353 252 HOH HOH . N 4 HOH A 54 354 269 HOH HOH . N 4 HOH A 55 355 140 HOH HOH . N 4 HOH A 56 356 103 HOH HOH . N 4 HOH A 57 357 273 HOH HOH . N 4 HOH A 58 358 40 HOH HOH . N 4 HOH A 59 359 33 HOH HOH . N 4 HOH A 60 360 123 HOH HOH . N 4 HOH A 61 361 232 HOH HOH . N 4 HOH A 62 362 238 HOH HOH . N 4 HOH A 63 363 38 HOH HOH . N 4 HOH A 64 364 119 HOH HOH . N 4 HOH A 65 365 127 HOH HOH . N 4 HOH A 66 366 29 HOH HOH . N 4 HOH A 67 367 55 HOH HOH . N 4 HOH A 68 368 261 HOH HOH . N 4 HOH A 69 369 27 HOH HOH . N 4 HOH A 70 370 87 HOH HOH . N 4 HOH A 71 371 136 HOH HOH . N 4 HOH A 72 372 236 HOH HOH . N 4 HOH A 73 373 221 HOH HOH . N 4 HOH A 74 374 267 HOH HOH . N 4 HOH A 75 375 89 HOH HOH . N 4 HOH A 76 376 206 HOH HOH . N 4 HOH A 77 377 188 HOH HOH . N 4 HOH A 78 378 105 HOH HOH . N 4 HOH A 79 379 78 HOH HOH . N 4 HOH A 80 380 257 HOH HOH . N 4 HOH A 81 381 95 HOH HOH . N 4 HOH A 82 382 101 HOH HOH . N 4 HOH A 83 383 139 HOH HOH . N 4 HOH A 84 384 83 HOH HOH . N 4 HOH A 85 385 126 HOH HOH . N 4 HOH A 86 386 116 HOH HOH . N 4 HOH A 87 387 60 HOH HOH . N 4 HOH A 88 388 144 HOH HOH . N 4 HOH A 89 389 199 HOH HOH . N 4 HOH A 90 390 43 HOH HOH . N 4 HOH A 91 391 73 HOH HOH . N 4 HOH A 92 392 145 HOH HOH . N 4 HOH A 93 393 112 HOH HOH . N 4 HOH A 94 394 104 HOH HOH . N 4 HOH A 95 395 53 HOH HOH . N 4 HOH A 96 396 230 HOH HOH . N 4 HOH A 97 397 272 HOH HOH . N 4 HOH A 98 398 120 HOH HOH . N 4 HOH A 99 399 141 HOH HOH . N 4 HOH A 100 400 208 HOH HOH . N 4 HOH A 101 401 100 HOH HOH . N 4 HOH A 102 402 245 HOH HOH . N 4 HOH A 103 403 122 HOH HOH . N 4 HOH A 104 404 270 HOH HOH . N 4 HOH A 105 405 130 HOH HOH . N 4 HOH A 106 406 138 HOH HOH . N 4 HOH A 107 407 143 HOH HOH . N 4 HOH A 108 408 207 HOH HOH . N 4 HOH A 109 409 266 HOH HOH . N 4 HOH A 110 410 195 HOH HOH . N 4 HOH A 111 411 260 HOH HOH . N 4 HOH A 112 412 235 HOH HOH . N 4 HOH A 113 413 194 HOH HOH . N 4 HOH A 114 414 137 HOH HOH . N 4 HOH A 115 415 192 HOH HOH . N 4 HOH A 116 416 259 HOH HOH . N 4 HOH A 117 417 134 HOH HOH . N 4 HOH A 118 418 204 HOH HOH . N 4 HOH A 119 419 189 HOH HOH . N 4 HOH A 120 420 117 HOH HOH . N 4 HOH A 121 421 142 HOH HOH . N 4 HOH A 122 422 135 HOH HOH . N 4 HOH A 123 423 148 HOH HOH . N 4 HOH A 124 424 193 HOH HOH . N 4 HOH A 125 425 205 HOH HOH . N 4 HOH A 126 426 247 HOH HOH . O 4 HOH B 1 301 240 HOH HOH . O 4 HOH B 2 302 57 HOH HOH . O 4 HOH B 3 303 113 HOH HOH . O 4 HOH B 4 304 183 HOH HOH . O 4 HOH B 5 305 49 HOH HOH . O 4 HOH B 6 306 220 HOH HOH . O 4 HOH B 7 307 174 HOH HOH . O 4 HOH B 8 308 68 HOH HOH . O 4 HOH B 9 309 224 HOH HOH . O 4 HOH B 10 310 255 HOH HOH . O 4 HOH B 11 311 66 HOH HOH . O 4 HOH B 12 312 170 HOH HOH . O 4 HOH B 13 313 239 HOH HOH . O 4 HOH B 14 314 86 HOH HOH . O 4 HOH B 15 315 81 HOH HOH . O 4 HOH B 16 316 166 HOH HOH . O 4 HOH B 17 317 16 HOH HOH . O 4 HOH B 18 318 15 HOH HOH . O 4 HOH B 19 319 52 HOH HOH . O 4 HOH B 20 320 152 HOH HOH . O 4 HOH B 21 321 28 HOH HOH . O 4 HOH B 22 322 41 HOH HOH . O 4 HOH B 23 323 58 HOH HOH . O 4 HOH B 24 324 6 HOH HOH . O 4 HOH B 25 325 25 HOH HOH . O 4 HOH B 26 326 213 HOH HOH . O 4 HOH B 27 327 65 HOH HOH . O 4 HOH B 28 328 4 HOH HOH . O 4 HOH B 29 329 71 HOH HOH . O 4 HOH B 30 330 79 HOH HOH . O 4 HOH B 31 331 13 HOH HOH . O 4 HOH B 32 332 42 HOH HOH . O 4 HOH B 33 333 62 HOH HOH . O 4 HOH B 34 334 178 HOH HOH . O 4 HOH B 35 335 50 HOH HOH . O 4 HOH B 36 336 215 HOH HOH . O 4 HOH B 37 337 32 HOH HOH . O 4 HOH B 38 338 226 HOH HOH . O 4 HOH B 39 339 196 HOH HOH . O 4 HOH B 40 340 9 HOH HOH . O 4 HOH B 41 341 10 HOH HOH . O 4 HOH B 42 342 11 HOH HOH . O 4 HOH B 43 343 244 HOH HOH . O 4 HOH B 44 344 146 HOH HOH . O 4 HOH B 45 345 3 HOH HOH . O 4 HOH B 46 346 171 HOH HOH . O 4 HOH B 47 347 14 HOH HOH . O 4 HOH B 48 348 179 HOH HOH . O 4 HOH B 49 349 181 HOH HOH . O 4 HOH B 50 350 92 HOH HOH . O 4 HOH B 51 351 35 HOH HOH . O 4 HOH B 52 352 45 HOH HOH . O 4 HOH B 53 353 237 HOH HOH . O 4 HOH B 54 354 36 HOH HOH . O 4 HOH B 55 355 23 HOH HOH . O 4 HOH B 56 356 70 HOH HOH . O 4 HOH B 57 357 165 HOH HOH . O 4 HOH B 58 358 159 HOH HOH . O 4 HOH B 59 359 200 HOH HOH . O 4 HOH B 60 360 63 HOH HOH . O 4 HOH B 61 361 30 HOH HOH . O 4 HOH B 62 362 177 HOH HOH . O 4 HOH B 63 363 31 HOH HOH . O 4 HOH B 64 364 64 HOH HOH . O 4 HOH B 65 365 47 HOH HOH . O 4 HOH B 66 366 46 HOH HOH . O 4 HOH B 67 367 24 HOH HOH . O 4 HOH B 68 368 180 HOH HOH . O 4 HOH B 69 369 175 HOH HOH . O 4 HOH B 70 370 22 HOH HOH . O 4 HOH B 71 371 93 HOH HOH . O 4 HOH B 72 372 90 HOH HOH . O 4 HOH B 73 373 168 HOH HOH . O 4 HOH B 74 374 164 HOH HOH . O 4 HOH B 75 375 72 HOH HOH . O 4 HOH B 76 376 26 HOH HOH . O 4 HOH B 77 377 76 HOH HOH . O 4 HOH B 78 378 264 HOH HOH . O 4 HOH B 79 379 97 HOH HOH . O 4 HOH B 80 380 154 HOH HOH . O 4 HOH B 81 381 163 HOH HOH . O 4 HOH B 82 382 277 HOH HOH . O 4 HOH B 83 383 88 HOH HOH . O 4 HOH B 84 384 209 HOH HOH . O 4 HOH B 85 385 172 HOH HOH . O 4 HOH B 86 386 67 HOH HOH . O 4 HOH B 87 387 84 HOH HOH . O 4 HOH B 88 388 228 HOH HOH . O 4 HOH B 89 389 162 HOH HOH . O 4 HOH B 90 390 184 HOH HOH . O 4 HOH B 91 391 158 HOH HOH . O 4 HOH B 92 392 219 HOH HOH . O 4 HOH B 93 393 160 HOH HOH . O 4 HOH B 94 394 161 HOH HOH . O 4 HOH B 95 395 276 HOH HOH . O 4 HOH B 96 396 214 HOH HOH . O 4 HOH B 97 397 211 HOH HOH . O 4 HOH B 98 398 223 HOH HOH . O 4 HOH B 99 399 54 HOH HOH . O 4 HOH B 100 400 225 HOH HOH . O 4 HOH B 101 401 241 HOH HOH . O 4 HOH B 102 402 275 HOH HOH . O 4 HOH B 103 403 149 HOH HOH . O 4 HOH B 104 404 173 HOH HOH . O 4 HOH B 105 405 85 HOH HOH . O 4 HOH B 106 406 210 HOH HOH . O 4 HOH B 107 407 242 HOH HOH . O 4 HOH B 108 408 248 HOH HOH . O 4 HOH B 109 409 150 HOH HOH . O 4 HOH B 110 410 156 HOH HOH . O 4 HOH B 111 411 186 HOH HOH . O 4 HOH B 112 412 243 HOH HOH . O 4 HOH B 113 413 176 HOH HOH . O 4 HOH B 114 414 182 HOH HOH . O 4 HOH B 115 415 151 HOH HOH . O 4 HOH B 116 416 157 HOH HOH . O 4 HOH B 117 417 253 HOH HOH . O 4 HOH B 118 418 147 HOH HOH . O 4 HOH B 119 419 201 HOH HOH . O 4 HOH B 120 420 80 HOH HOH . O 4 HOH B 121 421 216 HOH HOH . O 4 HOH B 122 422 187 HOH HOH . O 4 HOH B 123 423 203 HOH HOH . O 4 HOH B 124 424 254 HOH HOH . O 4 HOH B 125 425 155 HOH HOH . O 4 HOH B 126 426 217 HOH HOH . O 4 HOH B 127 427 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -11.352 23.862 31.44 1 41.06 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 2 -10.988 24.969 30.644 1 58.35 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 2 -12.246 24.291 32.598 1 43.91 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 2 -12.175 25.692 32.772 1 48.15 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 2 -11.818 23.518 33.851 1 41.46 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 2 -11.576 24.348 34.971 1 36.25 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #