data_6D4O # _model_server_result.job_id 14t-lcEC-6IAvgwIFRdA2Q _model_server_result.datetime_utc '2025-01-02 18:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6D4O # _exptl.entry_id 6D4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.937 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5aR,9aR)-2-chloro-11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5a,6,9,9a-tetrahydrodibenzo[b,f][1,4]oxazepine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6D4O _cell.length_a 179.954 _cell.length_b 179.954 _cell.length_c 134.941 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.977 -155.844736 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.980333 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.977 -155.844736 -44.980333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 545 A TYR 542 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 A O TRP 564 A TRP 561 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 A O LYS 583 A LYS 580 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? # _chem_comp.formula 'C23 H28 Cl N3 O7' _chem_comp.formula_weight 493.937 _chem_comp.id FUV _chem_comp.mon_nstd_flag . _chem_comp.name (5aR,9aR)-2-chloro-11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5a,6,9,9a-tetrahydrodibenzo[b,f][1,4]oxazepine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C07 FUV sing 83 n n C10 O11 FUV doub 84 n n C10 O12 FUV sing 85 n n C15 C14 FUV sing 86 n n C15 N16 FUV sing 87 n n C14 N13 FUV sing 88 n n C02 C03 FUV sing 89 n n C02 C08 FUV sing 90 n n C02 O01 FUV sing 91 n n C03 C05 FUV sing 92 n n C03 O04 FUV sing 93 n n C05 N13 FUV sing 94 n n C05 O06 FUV sing 95 n n C07 C08 FUV sing 96 n n C07 O06 FUV sing 97 n n C08 O09 FUV sing 98 n n C17 C18 FUV sing 99 n n C17 N16 FUV sing 100 n n C18 N13 FUV sing 101 n n C19 C25 FUV sing 102 n n C19 N16 FUV sing 103 n n C19 N20 FUV doub 104 n n C21 C22 FUV sing 105 n n C21 C34 FUV sing 106 n n C21 N20 FUV sing 107 n n C22 C31 FUV sing 108 n n C22 O23 FUV sing 109 n n C24 C25 FUV doub 110 n y C24 C30 FUV sing 111 n y C24 O23 FUV sing 112 n n C25 C26 FUV sing 113 n y C26 C27 FUV doub 114 n y C27 C29 FUV sing 115 n y C27 CL1 FUV sing 116 n n C29 C30 FUV doub 117 n y C31 C32 FUV sing 118 n n C32 C33 FUV doub 119 n n C33 C34 FUV sing 120 n n C15 H1 FUV sing 121 n n C15 H2 FUV sing 122 n n C14 H3 FUV sing 123 n n C14 H4 FUV sing 124 n n C02 H5 FUV sing 125 n n C03 H6 FUV sing 126 n n C05 H7 FUV sing 127 n n C07 H8 FUV sing 128 n n C08 H9 FUV sing 129 n n C17 H10 FUV sing 130 n n C17 H11 FUV sing 131 n n C18 H12 FUV sing 132 n n C18 H13 FUV sing 133 n n C21 H15 FUV sing 134 n n C22 H16 FUV sing 135 n n C26 H17 FUV sing 136 n n C29 H18 FUV sing 137 n n C30 H19 FUV sing 138 n n C31 H20 FUV sing 139 n n C31 H21 FUV sing 140 n n C32 H22 FUV sing 141 n n C33 H23 FUV sing 142 n n C34 H24 FUV sing 143 n n C34 H25 FUV sing 144 n n O01 H30 FUV sing 145 n n O04 H31 FUV sing 146 n n O09 H32 FUV sing 147 n n O12 H33 FUV sing 148 n n # _atom_sites.entry_id 6D4O _atom_sites.fract_transf_matrix[1][1] 0.005557 _atom_sites.fract_transf_matrix[1][2] 0.003208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUV A 1 701 2 FUV AXG . C 3 CL A 1 702 1 CL CL . D 4 NA A 1 703 1 NA NA . E 5 HOH A 1 801 21 HOH HOH . E 5 HOH A 2 802 37 HOH HOH . E 5 HOH A 3 803 50 HOH HOH . E 5 HOH A 4 804 14 HOH HOH . E 5 HOH A 5 805 44 HOH HOH . E 5 HOH A 6 806 31 HOH HOH . E 5 HOH A 7 807 13 HOH HOH . E 5 HOH A 8 808 47 HOH HOH . E 5 HOH A 9 809 12 HOH HOH . E 5 HOH A 10 810 20 HOH HOH . E 5 HOH A 11 811 17 HOH HOH . E 5 HOH A 12 812 51 HOH HOH . E 5 HOH A 13 813 2 HOH HOH . E 5 HOH A 14 814 54 HOH HOH . E 5 HOH A 15 815 3 HOH HOH . E 5 HOH A 16 816 48 HOH HOH . E 5 HOH A 17 817 9 HOH HOH . E 5 HOH A 18 818 7 HOH HOH . E 5 HOH A 19 819 18 HOH HOH . E 5 HOH A 20 820 28 HOH HOH . E 5 HOH A 21 821 4 HOH HOH . E 5 HOH A 22 822 45 HOH HOH . E 5 HOH A 23 823 32 HOH HOH . E 5 HOH A 24 824 25 HOH HOH . E 5 HOH A 25 825 49 HOH HOH . E 5 HOH A 26 826 5 HOH HOH . E 5 HOH A 27 827 34 HOH HOH . E 5 HOH A 28 828 39 HOH HOH . E 5 HOH A 29 829 30 HOH HOH . E 5 HOH A 30 830 6 HOH HOH . E 5 HOH A 31 831 36 HOH HOH . E 5 HOH A 32 832 1 HOH HOH . E 5 HOH A 33 833 23 HOH HOH . E 5 HOH A 34 834 42 HOH HOH . E 5 HOH A 35 835 43 HOH HOH . E 5 HOH A 36 836 41 HOH HOH . E 5 HOH A 37 837 52 HOH HOH . E 5 HOH A 38 838 19 HOH HOH . E 5 HOH A 39 839 33 HOH HOH . E 5 HOH A 40 840 15 HOH HOH . E 5 HOH A 41 841 38 HOH HOH . E 5 HOH A 42 842 53 HOH HOH . E 5 HOH A 43 843 46 HOH HOH . E 5 HOH A 44 844 29 HOH HOH . E 5 HOH A 45 845 16 HOH HOH . E 5 HOH A 46 846 22 HOH HOH . E 5 HOH A 47 847 10 HOH HOH . E 5 HOH A 48 848 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FUV . A . B 2 24.397 -81.006 -13.219 1 43.06 ? C10 FUV 701 A 1 HETATM 2 C C15 FUV . A . B 2 20.77 -84.261 -12.317 1 43.71 ? C15 FUV 701 A 1 HETATM 3 C C14 FUV . A . B 2 21.478 -82.975 -11.923 1 49.01 ? C14 FUV 701 A 1 HETATM 4 C C02 FUV . A . B 2 23.512 -81.015 -9.511 1 39.3 ? C02 FUV 701 A 1 HETATM 5 C C03 FUV . A . B 2 22.025 -81.053 -9.627 1 36.67 ? C03 FUV 701 A 1 HETATM 6 C C05 FUV . A . B 2 21.405 -80.731 -11.016 1 35.82 ? C05 FUV 701 A 1 HETATM 7 C C07 FUV . A . B 2 23.81 -80.507 -11.881 1 43.18 ? C07 FUV 701 A 1 HETATM 8 C C08 FUV . A . B 2 24.169 -81.476 -10.741 1 38.73 ? C08 FUV 701 A 1 HETATM 9 C C17 FUV . A . B 2 18.817 -82.896 -12.843 1 55.06 ? C17 FUV 701 A 1 HETATM 10 C C18 FUV . A . B 2 19.683 -81.63 -12.613 1 42.41 ? C18 FUV 701 A 1 HETATM 11 C C19 FUV . A . B 2 19.239 -85.001 -14.355 1 72 ? C19 FUV 701 A 1 HETATM 12 C C21 FUV . A . B 2 17.882 -85.599 -16.042 1 76.48 ? C21 FUV 701 A 1 HETATM 13 C C22 FUV . A . B 2 17.767 -86.838 -16.14 1 76.43 ? C22 FUV 701 A 1 HETATM 14 C C24 FUV . A . B 2 19.773 -87.574 -15.465 1 75.27 ? C24 FUV 701 A 1 HETATM 15 C C25 FUV . A . B 2 20.169 -86.31 -14.816 1 71.79 ? C25 FUV 701 A 1 HETATM 16 C C26 FUV . A . B 2 21.548 -86.14 -14.626 1 62.59 ? C26 FUV 701 A 1 HETATM 17 C C27 FUV . A . B 2 22.513 -87.111 -14.961 1 71.98 ? C27 FUV 701 A 1 HETATM 18 C C29 FUV . A . B 2 22.093 -88.327 -15.573 1 82.67 ? C29 FUV 701 A 1 HETATM 19 C C30 FUV . A . B 2 20.723 -88.536 -15.822 1 82.48 ? C30 FUV 701 A 1 HETATM 20 C C31 FUV . A . B 2 17.362 -87.548 -17.276 1 73.98 ? C31 FUV 701 A 1 HETATM 21 C C32 FUV . A . B 2 16.648 -86.619 -18.053 1 69.98 ? C32 FUV 701 A 1 HETATM 22 C C33 FUV . A . B 2 16.53 -85.226 -17.749 1 76.99 ? C33 FUV 701 A 1 HETATM 23 C C34 FUV . A . B 2 17.098 -84.601 -16.626 1 80.16 ? C34 FUV 701 A 1 HETATM 24 N N13 FUV . A . B 2 20.61 -81.901 -11.531 1 44.19 ? N13 FUV 701 A 1 HETATM 25 N N16 FUV . A . B 2 19.62 -84.086 -13.225 1 55.42 ? N16 FUV 701 A 1 HETATM 26 N N20 FUV . A . B 2 18.057 -84.626 -15.104 1 75.14 ? N20 FUV 701 A 1 HETATM 27 O O01 FUV . A . B 2 23.995 -81.794 -8.432 1 35.16 ? O01 FUV 701 A 1 HETATM 28 O O04 FUV . A . B 2 21.484 -80.148 -8.696 1 34.29 ? O04 FUV 701 A 1 HETATM 29 O O06 FUV . A . B 2 22.35 -80.264 -12.056 1 45.95 ? O06 FUV 701 A 1 HETATM 30 O O09 FUV . A . B 2 25.567 -81.564 -10.565 1 37.93 ? O09 FUV 701 A 1 HETATM 31 O O11 FUV . A . B 2 23.748 -81.872 -13.891 1 32.68 ? O11 FUV 701 A 1 HETATM 32 O O12 FUV . A . B 2 25.51 -80.523 -13.628 1 39.35 ? O12 FUV 701 A 1 HETATM 33 O O23 FUV . A . B 2 18.402 -88.025 -15.861 1 82.3 ? O23 FUV 701 A 1 HETATM 34 CL CL1 FUV . A . B 2 24.249 -86.818 -14.632 1 67.59 ? CL1 FUV 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #