data_6D54 # _model_server_result.job_id tVlRH0mH1oDtNxj5Pm223Q _model_server_result.datetime_utc '2024-11-21 14:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6D54 # loop_ _exptl.entry_id _exptl.method 6D54 'X-RAY DIFFRACTION' 6D54 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D54 _cell.length_a 41.884 _cell.length_b 41.884 _cell.length_c 24.307 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -12.1535 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 4 A DG 4 1_555 A P CSL 5 A CSL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale2 A O3' CSL 5 A CSL 5 1_555 A P DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 A OP2 DA 7 A DA 7 1_555 C MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 B MG MG . A MG 101 1_555 D O DOD . A DOD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 B MG MG . A MG 101 1_555 D O DOD . A DOD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 B MG MG . A MG 101 1_555 D O DOD . A DOD 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc5 B MG MG . A MG 101 1_555 D O DOD . A DOD 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 B MG MG . A MG 101 1_555 D O DOD . A DOD 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 B MG MG . A MG 101 1_555 D O DOD . A DOD 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc8 C MG MG . A MG 102 1_555 D O DOD . A DOD 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc9 C MG MG . A MG 102 1_555 D O DOD . A DOD 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 C MG MG . A MG 102 1_555 D O DOD . A DOD 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc11 C MG MG . A MG 102 1_555 D O DOD . A DOD 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 C MG MG . A MG 102 1_555 D O DOD . A DOD 236 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6D54 _atom_sites.fract_transf_matrix[1][1] 0.023875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.04114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 101 11 MG MG . C 2 MG A 1 102 12 MG MG . D 3 DOD A 1 201 1008 DOD DOD . D 3 DOD A 2 202 1033 DOD DOD . D 3 DOD A 3 203 1029 DOD DOD . D 3 DOD A 4 204 1021 DOD DOD . D 3 DOD A 5 205 1020 DOD DOD . D 3 DOD A 6 206 1034 DOD DOD . D 3 DOD A 7 207 1026 DOD DOD . D 3 DOD A 8 208 1001 DOD DOD . D 3 DOD A 9 209 1005 DOD DOD . D 3 DOD A 10 210 1004 DOD DOD . D 3 DOD A 11 211 1036 DOD DOD . D 3 DOD A 12 212 1028 DOD DOD . D 3 DOD A 13 213 1009 DOD DOD . D 3 DOD A 14 214 1017 DOD DOD . D 3 DOD A 15 215 1025 DOD DOD . D 3 DOD A 16 216 1007 DOD DOD . D 3 DOD A 17 217 1015 DOD DOD . D 3 DOD A 18 218 1010 DOD DOD . D 3 DOD A 19 219 1039 DOD DOD . D 3 DOD A 20 220 1016 DOD DOD . D 3 DOD A 21 221 1006 DOD DOD . D 3 DOD A 22 222 1037 DOD DOD . D 3 DOD A 23 223 1022 DOD DOD . D 3 DOD A 24 224 1011 DOD DOD . D 3 DOD A 25 225 1024 DOD DOD . D 3 DOD A 26 226 1014 DOD DOD . D 3 DOD A 27 227 1038 DOD DOD . D 3 DOD A 28 228 1027 DOD DOD . D 3 DOD A 29 229 1013 DOD DOD . D 3 DOD A 30 230 1018 DOD DOD . D 3 DOD A 31 231 1035 DOD DOD . D 3 DOD A 32 232 1030 DOD DOD . D 3 DOD A 33 233 1031 DOD DOD . D 3 DOD A 34 234 1019 DOD DOD . D 3 DOD A 35 235 1023 DOD DOD . D 3 DOD A 36 236 1012 DOD DOD . D 3 DOD A 37 237 1002 DOD DOD . D 3 DOD A 38 238 1003 DOD DOD . D 3 DOD A 39 239 1032 DOD DOD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.408 _atom_site.Cartn_y -8.844 _atom_site.Cartn_z -5.008 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #