data_6D5N
#
_model_server_result.job_id            LQrnWqG8s8kZv239Zs1Vig 
_model_server_result.datetime_utc      '2024-11-06 10:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d5n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6D5N 
#
_exptl.entry_id    6D5N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6D5N 
_cell.length_a            93.803 
_cell.length_b            93.803 
_cell.length_c            132.293 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D5N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C VAL . A VAL 401 1_555 C N LYS . A LYS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing 
metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc4 A O GLN 61 A GLN 61 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc12 A O ASN 183 A ASN 183 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc15 A O GLU 187 A GLU 187 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc16 A OE1 GLU 190 A GLU 190 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc17 A OE2 GLU 190 A GLU 190 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc19 A O TYR 193 A TYR 193 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc20 A O THR 194 A THR 194 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc21 A OG1 THR 194 A THR 194 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc22 A O ILE 197 A ILE 197 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc24 D ZN ZN . A ZN 403 1_555 K O HOH . A HOH 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc25 E CA CA . A CA 404 1_555 K O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc26 F CA CA . A CA 405 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc27 F CA CA . A CA 405 1_555 K O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc28 F CA CA . A CA 405 1_555 K O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc29 G CA CA . A CA 406 1_555 K O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc30 G CA CA . A CA 406 1_555 K O HOH . A HOH 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc31 H CA CA . A CA 407 1_555 K O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc32 H CA CA . A CA 407 1_555 K O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6D5N 
_atom_sites.fract_transf_matrix[1][1]    0.010661 
_atom_sites.fract_transf_matrix[1][2]    0.006155 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VAL A 1 401 1322 VAL VAL . 
C 3 LYS A 1 402 1323 LYS LYS . 
D 4 ZN A 1 403 1 ZN ZN . 
E 5 CA A 1 404 1 CA CA . 
F 5 CA A 1 405 2 CA CA . 
G 5 CA A 1 406 3 CA CA . 
H 5 CA A 1 407 4 CA CA . 
I 6 XYP A 1 408 1 XYP XYP . 
J 6 XYP A 1 409 3 XYP XYP . 
K 7 HOH A 1 501 108 HOH HOH . 
K 7 HOH A 2 502 103 HOH HOH . 
K 7 HOH A 3 503 86 HOH HOH . 
K 7 HOH A 4 504 93 HOH HOH . 
K 7 HOH A 5 505 77 HOH HOH . 
K 7 HOH A 6 506 132 HOH HOH . 
K 7 HOH A 7 507 53 HOH HOH . 
K 7 HOH A 8 508 66 HOH HOH . 
K 7 HOH A 9 509 101 HOH HOH . 
K 7 HOH A 10 510 31 HOH HOH . 
K 7 HOH A 11 511 145 HOH HOH . 
K 7 HOH A 12 512 30 HOH HOH . 
K 7 HOH A 13 513 65 HOH HOH . 
K 7 HOH A 14 514 100 HOH HOH . 
K 7 HOH A 15 515 4 HOH HOH . 
K 7 HOH A 16 516 79 HOH HOH . 
K 7 HOH A 17 517 24 HOH HOH . 
K 7 HOH A 18 518 142 HOH HOH . 
K 7 HOH A 19 519 120 HOH HOH . 
K 7 HOH A 20 520 13 HOH HOH . 
K 7 HOH A 21 521 76 HOH HOH . 
K 7 HOH A 22 522 136 HOH HOH . 
K 7 HOH A 23 523 18 HOH HOH . 
K 7 HOH A 24 524 89 HOH HOH . 
K 7 HOH A 25 525 47 HOH HOH . 
K 7 HOH A 26 526 2 HOH HOH . 
K 7 HOH A 27 527 68 HOH HOH . 
K 7 HOH A 28 528 113 HOH HOH . 
K 7 HOH A 29 529 135 HOH HOH . 
K 7 HOH A 30 530 82 HOH HOH . 
K 7 HOH A 31 531 12 HOH HOH . 
K 7 HOH A 32 532 17 HOH HOH . 
K 7 HOH A 33 533 11 HOH HOH . 
K 7 HOH A 34 534 109 HOH HOH . 
K 7 HOH A 35 535 19 HOH HOH . 
K 7 HOH A 36 536 64 HOH HOH . 
K 7 HOH A 37 537 80 HOH HOH . 
K 7 HOH A 38 538 26 HOH HOH . 
K 7 HOH A 39 539 15 HOH HOH . 
K 7 HOH A 40 540 84 HOH HOH . 
K 7 HOH A 41 541 56 HOH HOH . 
K 7 HOH A 42 542 41 HOH HOH . 
K 7 HOH A 43 543 90 HOH HOH . 
K 7 HOH A 44 544 71 HOH HOH . 
K 7 HOH A 45 545 38 HOH HOH . 
K 7 HOH A 46 546 114 HOH HOH . 
K 7 HOH A 47 547 129 HOH HOH . 
K 7 HOH A 48 548 125 HOH HOH . 
K 7 HOH A 49 549 118 HOH HOH . 
K 7 HOH A 50 550 87 HOH HOH . 
K 7 HOH A 51 551 104 HOH HOH . 
K 7 HOH A 52 552 61 HOH HOH . 
K 7 HOH A 53 553 138 HOH HOH . 
K 7 HOH A 54 554 54 HOH HOH . 
K 7 HOH A 55 555 34 HOH HOH . 
K 7 HOH A 56 556 73 HOH HOH . 
K 7 HOH A 57 557 59 HOH HOH . 
K 7 HOH A 58 558 8 HOH HOH . 
K 7 HOH A 59 559 35 HOH HOH . 
K 7 HOH A 60 560 81 HOH HOH . 
K 7 HOH A 61 561 106 HOH HOH . 
K 7 HOH A 62 562 23 HOH HOH . 
K 7 HOH A 63 563 25 HOH HOH . 
K 7 HOH A 64 564 9 HOH HOH . 
K 7 HOH A 65 565 137 HOH HOH . 
K 7 HOH A 66 566 44 HOH HOH . 
K 7 HOH A 67 567 21 HOH HOH . 
K 7 HOH A 68 568 110 HOH HOH . 
K 7 HOH A 69 569 39 HOH HOH . 
K 7 HOH A 70 570 3 HOH HOH . 
K 7 HOH A 71 571 36 HOH HOH . 
K 7 HOH A 72 572 52 HOH HOH . 
K 7 HOH A 73 573 5 HOH HOH . 
K 7 HOH A 74 574 121 HOH HOH . 
K 7 HOH A 75 575 50 HOH HOH . 
K 7 HOH A 76 576 49 HOH HOH . 
K 7 HOH A 77 577 43 HOH HOH . 
K 7 HOH A 78 578 6 HOH HOH . 
K 7 HOH A 79 579 62 HOH HOH . 
K 7 HOH A 80 580 46 HOH HOH . 
K 7 HOH A 81 581 20 HOH HOH . 
K 7 HOH A 82 582 7 HOH HOH . 
K 7 HOH A 83 583 141 HOH HOH . 
K 7 HOH A 84 584 92 HOH HOH . 
K 7 HOH A 85 585 27 HOH HOH . 
K 7 HOH A 86 586 124 HOH HOH . 
K 7 HOH A 87 587 85 HOH HOH . 
K 7 HOH A 88 588 22 HOH HOH . 
K 7 HOH A 89 589 40 HOH HOH . 
K 7 HOH A 90 590 58 HOH HOH . 
K 7 HOH A 91 591 28 HOH HOH . 
K 7 HOH A 92 592 112 HOH HOH . 
K 7 HOH A 93 593 32 HOH HOH . 
K 7 HOH A 94 594 128 HOH HOH . 
K 7 HOH A 95 595 72 HOH HOH . 
K 7 HOH A 96 596 127 HOH HOH . 
K 7 HOH A 97 597 63 HOH HOH . 
K 7 HOH A 98 598 99 HOH HOH . 
K 7 HOH A 99 599 111 HOH HOH . 
K 7 HOH A 100 600 116 HOH HOH . 
K 7 HOH A 101 601 107 HOH HOH . 
K 7 HOH A 102 602 37 HOH HOH . 
K 7 HOH A 103 603 45 HOH HOH . 
K 7 HOH A 104 604 131 HOH HOH . 
K 7 HOH A 105 605 55 HOH HOH . 
K 7 HOH A 106 606 88 HOH HOH . 
K 7 HOH A 107 607 16 HOH HOH . 
K 7 HOH A 108 608 102 HOH HOH . 
K 7 HOH A 109 609 130 HOH HOH . 
K 7 HOH A 110 610 78 HOH HOH . 
K 7 HOH A 111 611 74 HOH HOH . 
K 7 HOH A 112 612 126 HOH HOH . 
K 7 HOH A 113 613 133 HOH HOH . 
K 7 HOH A 114 614 67 HOH HOH . 
K 7 HOH A 115 615 14 HOH HOH . 
K 7 HOH A 116 616 33 HOH HOH . 
K 7 HOH A 117 617 29 HOH HOH . 
K 7 HOH A 118 618 91 HOH HOH . 
K 7 HOH A 119 619 10 HOH HOH . 
K 7 HOH A 120 620 75 HOH HOH . 
K 7 HOH A 121 621 51 HOH HOH . 
K 7 HOH A 122 622 105 HOH HOH . 
K 7 HOH A 123 623 119 HOH HOH . 
K 7 HOH A 124 624 139 HOH HOH . 
K 7 HOH A 125 625 48 HOH HOH . 
K 7 HOH A 126 626 144 HOH HOH . 
K 7 HOH A 127 627 60 HOH HOH . 
K 7 HOH A 128 628 70 HOH HOH . 
K 7 HOH A 129 629 42 HOH HOH . 
K 7 HOH A 130 630 117 HOH HOH . 
K 7 HOH A 131 631 115 HOH HOH . 
K 7 HOH A 132 632 123 HOH HOH . 
K 7 HOH A 133 633 122 HOH HOH . 
K 7 HOH A 134 634 140 HOH HOH . 
K 7 HOH A 135 635 57 HOH HOH . 
K 7 HOH A 136 636 134 HOH HOH . 
K 7 HOH A 137 637 98 HOH HOH . 
K 7 HOH A 138 638 94 HOH HOH . 
K 7 HOH A 139 639 143 HOH HOH . 
K 7 HOH A 140 640 97 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               10.286 
_atom_site.Cartn_y               -36.488 
_atom_site.Cartn_z               7.047 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#