data_6D5P # _model_server_result.job_id L2mK_gr3l1UQJ5bnbQsZRw _model_server_result.datetime_utc '2024-11-26 21:19:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6D5P # _exptl.entry_id 6D5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6D5P _cell.length_a 93.307 _cell.length_b 93.307 _cell.length_c 129.125 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc12 A O ASN 183 A ASN 183 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc15 A O GLU 187 A GLU 187 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 A OE1 GLU 190 A GLU 190 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc17 A OE2 GLU 190 A GLU 190 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc19 A O TYR 193 A TYR 193 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc20 A O THR 194 A THR 194 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc21 A OG1 THR 194 A THR 194 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc22 A O ILE 197 A ILE 197 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc24 D ZN ZN . A ZN 403 1_555 L O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc25 E CA CA . A CA 404 1_555 L O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc26 F CA CA . A CA 405 1_555 L O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc27 F CA CA . A CA 405 1_555 L O HOH . A HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc28 G CA CA . A CA 406 1_555 L O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc29 G CA CA . A CA 406 1_555 L O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id VAL _chem_comp.mon_nstd_flag y _chem_comp.name VALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VAL sing 345 n n N H VAL sing 346 n n N H2 VAL sing 347 n n CA C VAL sing 348 n n CA CB VAL sing 349 n n CA HA VAL sing 350 n n C O VAL doub 351 n n C OXT VAL sing 352 n n CB CG1 VAL sing 353 n n CB CG2 VAL sing 354 n n CB HB VAL sing 355 n n CG1 HG11 VAL sing 356 n n CG1 HG12 VAL sing 357 n n CG1 HG13 VAL sing 358 n n CG2 HG21 VAL sing 359 n n CG2 HG22 VAL sing 360 n n CG2 HG23 VAL sing 361 n n OXT HXT VAL sing 362 n n # _atom_sites.entry_id 6D5P _atom_sites.fract_transf_matrix[1][1] 0.010717 _atom_sites.fract_transf_matrix[1][2] 0.006188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL A 1 401 401 VAL VAL . C 3 LYS A 1 402 402 LYS LYS . D 4 ZN A 1 403 403 ZN ZN . E 5 CA A 1 404 404 CA CA . F 5 CA A 1 405 405 CA CA . G 5 CA A 1 406 406 CA CA . H 5 CA A 1 407 407 CA CA . I 6 XYP A 1 408 408 XYP XYP . J 6 XYP A 1 409 409 XYP XYP . K 6 XYP A 1 410 410 XYP XYP . L 7 HOH A 1 501 501 HOH HOH . L 7 HOH A 2 502 502 HOH HOH . L 7 HOH A 3 503 503 HOH HOH . L 7 HOH A 4 504 504 HOH HOH . L 7 HOH A 5 505 505 HOH HOH . L 7 HOH A 6 506 506 HOH HOH . L 7 HOH A 7 507 507 HOH HOH . L 7 HOH A 8 508 508 HOH HOH . L 7 HOH A 9 509 509 HOH HOH . L 7 HOH A 10 510 510 HOH HOH . L 7 HOH A 11 511 511 HOH HOH . L 7 HOH A 12 512 512 HOH HOH . L 7 HOH A 13 513 513 HOH HOH . L 7 HOH A 14 514 514 HOH HOH . L 7 HOH A 15 515 515 HOH HOH . L 7 HOH A 16 516 516 HOH HOH . L 7 HOH A 17 517 517 HOH HOH . L 7 HOH A 18 518 518 HOH HOH . L 7 HOH A 19 519 519 HOH HOH . L 7 HOH A 20 520 521 HOH HOH . L 7 HOH A 21 521 520 HOH HOH . L 7 HOH A 22 522 522 HOH HOH . L 7 HOH A 23 523 523 HOH HOH . L 7 HOH A 24 524 524 HOH HOH . L 7 HOH A 25 525 525 HOH HOH . L 7 HOH A 26 526 526 HOH HOH . L 7 HOH A 27 527 527 HOH HOH . L 7 HOH A 28 528 528 HOH HOH . L 7 HOH A 29 529 529 HOH HOH . L 7 HOH A 30 530 530 HOH HOH . L 7 HOH A 31 531 534 HOH HOH . L 7 HOH A 32 532 533 HOH HOH . L 7 HOH A 33 533 531 HOH HOH . L 7 HOH A 34 534 535 HOH HOH . L 7 HOH A 35 535 532 HOH HOH . L 7 HOH A 36 536 536 HOH HOH . L 7 HOH A 37 537 537 HOH HOH . L 7 HOH A 38 538 539 HOH HOH . L 7 HOH A 39 539 538 HOH HOH . L 7 HOH A 40 540 540 HOH HOH . L 7 HOH A 41 541 541 HOH HOH . L 7 HOH A 42 542 542 HOH HOH . L 7 HOH A 43 543 544 HOH HOH . L 7 HOH A 44 544 543 HOH HOH . L 7 HOH A 45 545 545 HOH HOH . L 7 HOH A 46 546 546 HOH HOH . L 7 HOH A 47 547 547 HOH HOH . L 7 HOH A 48 548 548 HOH HOH . L 7 HOH A 49 549 549 HOH HOH . L 7 HOH A 50 550 550 HOH HOH . L 7 HOH A 51 551 551 HOH HOH . L 7 HOH A 52 552 552 HOH HOH . L 7 HOH A 53 553 553 HOH HOH . L 7 HOH A 54 554 554 HOH HOH . L 7 HOH A 55 555 555 HOH HOH . L 7 HOH A 56 556 556 HOH HOH . L 7 HOH A 57 557 557 HOH HOH . L 7 HOH A 58 558 559 HOH HOH . L 7 HOH A 59 559 558 HOH HOH . L 7 HOH A 60 560 560 HOH HOH . L 7 HOH A 61 561 561 HOH HOH . L 7 HOH A 62 562 562 HOH HOH . L 7 HOH A 63 563 563 HOH HOH . L 7 HOH A 64 564 564 HOH HOH . L 7 HOH A 65 565 567 HOH HOH . L 7 HOH A 66 566 565 HOH HOH . L 7 HOH A 67 567 566 HOH HOH . L 7 HOH A 68 568 568 HOH HOH . L 7 HOH A 69 569 569 HOH HOH . L 7 HOH A 70 570 570 HOH HOH . L 7 HOH A 71 571 572 HOH HOH . L 7 HOH A 72 572 571 HOH HOH . L 7 HOH A 73 573 573 HOH HOH . L 7 HOH A 74 574 574 HOH HOH . L 7 HOH A 75 575 575 HOH HOH . L 7 HOH A 76 576 576 HOH HOH . L 7 HOH A 77 577 577 HOH HOH . L 7 HOH A 78 578 578 HOH HOH . L 7 HOH A 79 579 580 HOH HOH . L 7 HOH A 80 580 579 HOH HOH . L 7 HOH A 81 581 581 HOH HOH . L 7 HOH A 82 582 582 HOH HOH . L 7 HOH A 83 583 583 HOH HOH . L 7 HOH A 84 584 584 HOH HOH . L 7 HOH A 85 585 585 HOH HOH . L 7 HOH A 86 586 586 HOH HOH . L 7 HOH A 87 587 587 HOH HOH . L 7 HOH A 88 588 588 HOH HOH . L 7 HOH A 89 589 589 HOH HOH . L 7 HOH A 90 590 590 HOH HOH . L 7 HOH A 91 591 591 HOH HOH . L 7 HOH A 92 592 592 HOH HOH . L 7 HOH A 93 593 593 HOH HOH . L 7 HOH A 94 594 594 HOH HOH . L 7 HOH A 95 595 595 HOH HOH . L 7 HOH A 96 596 596 HOH HOH . L 7 HOH A 97 597 597 HOH HOH . L 7 HOH A 98 598 598 HOH HOH . L 7 HOH A 99 599 599 HOH HOH . L 7 HOH A 100 600 600 HOH HOH . L 7 HOH A 101 601 601 HOH HOH . L 7 HOH A 102 602 602 HOH HOH . L 7 HOH A 103 603 604 HOH HOH . L 7 HOH A 104 604 603 HOH HOH . L 7 HOH A 105 605 605 HOH HOH . L 7 HOH A 106 606 606 HOH HOH . L 7 HOH A 107 607 607 HOH HOH . L 7 HOH A 108 608 608 HOH HOH . L 7 HOH A 109 609 610 HOH HOH . L 7 HOH A 110 610 609 HOH HOH . L 7 HOH A 111 611 611 HOH HOH . L 7 HOH A 112 612 612 HOH HOH . L 7 HOH A 113 613 613 HOH HOH . L 7 HOH A 114 614 614 HOH HOH . L 7 HOH A 115 615 615 HOH HOH . L 7 HOH A 116 616 616 HOH HOH . L 7 HOH A 117 617 617 HOH HOH . L 7 HOH A 118 618 618 HOH HOH . L 7 HOH A 119 619 619 HOH HOH . L 7 HOH A 120 620 620 HOH HOH . L 7 HOH A 121 621 621 HOH HOH . L 7 HOH A 122 622 622 HOH HOH . L 7 HOH A 123 623 623 HOH HOH . L 7 HOH A 124 624 624 HOH HOH . L 7 HOH A 125 625 625 HOH HOH . L 7 HOH A 126 626 626 HOH HOH . L 7 HOH A 127 627 628 HOH HOH . L 7 HOH A 128 628 627 HOH HOH . L 7 HOH A 129 629 629 HOH HOH . L 7 HOH A 130 630 630 HOH HOH . L 7 HOH A 131 631 631 HOH HOH . L 7 HOH A 132 632 633 HOH HOH . L 7 HOH A 133 633 632 HOH HOH . L 7 HOH A 134 634 634 HOH HOH . L 7 HOH A 135 635 635 HOH HOH . L 7 HOH A 136 636 636 HOH HOH . L 7 HOH A 137 637 637 HOH HOH . L 7 HOH A 138 638 638 HOH HOH . L 7 HOH A 139 639 639 HOH HOH . L 7 HOH A 140 640 640 HOH HOH . L 7 HOH A 141 641 641 HOH HOH . L 7 HOH A 142 642 642 HOH HOH . L 7 HOH A 143 643 643 HOH HOH . L 7 HOH A 144 644 644 HOH HOH . L 7 HOH A 145 645 645 HOH HOH . L 7 HOH A 146 646 646 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VAL . . . B 2 11.04 -39.745 3.79 1 24.22 ? N VAL 401 A 1 HETATM 2 C CA VAL . . . B 2 9.888 -38.944 3.403 1 29.86 ? CA VAL 401 A 1 HETATM 3 C C VAL . . . B 2 8.609 -39.712 3.74 1 29.59 ? C VAL 401 A 1 HETATM 4 O O VAL . . . B 2 7.538 -39.121 3.885 1 25.44 ? O VAL 401 A 1 HETATM 5 C CB VAL . . . B 2 9.954 -38.569 1.904 1 51.72 ? CB VAL 401 A 1 HETATM 6 C CG1 VAL . . . B 2 9.656 -39.781 1.03 1 48.58 ? CG1 VAL 401 A 1 HETATM 7 C CG2 VAL . . . B 2 9.011 -37.41 1.587 1 30.94 ? CG2 VAL 401 A 1 HETATM 8 H HA VAL . . . B 2 9.888 -38.121 3.917 1 35.83 ? HA VAL 401 A 1 HETATM 9 H HB VAL . . . B 2 10.855 -38.276 1.699 1 62.06 ? HB VAL 401 A 1 HETATM 10 H HG11 VAL . . . B 2 9.704 -39.517 0.098 1 58.3 ? HG11 VAL 401 A 1 HETATM 11 H HG12 VAL . . . B 2 10.312 -40.471 1.213 1 58.3 ? HG12 VAL 401 A 1 HETATM 12 H HG13 VAL . . . B 2 8.766 -40.107 1.236 1 58.3 ? HG13 VAL 401 A 1 HETATM 13 H HG21 VAL . . . B 2 9.076 -37.199 0.643 1 37.13 ? HG21 VAL 401 A 1 HETATM 14 H HG22 VAL . . . B 2 8.104 -37.672 1.807 1 37.13 ? HG22 VAL 401 A 1 HETATM 15 H HG23 VAL . . . B 2 9.271 -36.639 2.117 1 37.13 ? HG23 VAL 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #