data_6D60 # _model_server_result.job_id H5miD7bWJcLoHGrekpsn4A _model_server_result.datetime_utc '2024-11-17 00:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6D60 # _exptl.entry_id 6D60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6D60 _cell.length_a 58.472 _cell.length_b 58.472 _cell.length_c 232.243 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.236 50.638237 38.707167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc9 B FE FE2 . A FE2 201 1_555 E O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 6D60 _atom_sites.fract_transf_matrix[1][1] 0.017102 _atom_sites.fract_transf_matrix[1][2] 0.009874 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 201 300 FE2 FE2 . C 2 FE2 A 1 202 301 FE2 FE2 . D 3 TRS A 1 203 400 TRS TRS . E 4 HOH A 1 301 134 HOH HOH . E 4 HOH A 2 302 122 HOH HOH . E 4 HOH A 3 303 139 HOH HOH . E 4 HOH A 4 304 90 HOH HOH . E 4 HOH A 5 305 41 HOH HOH . E 4 HOH A 6 306 30 HOH HOH . E 4 HOH A 7 307 26 HOH HOH . E 4 HOH A 8 308 65 HOH HOH . E 4 HOH A 9 309 19 HOH HOH . E 4 HOH A 10 310 73 HOH HOH . E 4 HOH A 11 311 31 HOH HOH . E 4 HOH A 12 312 15 HOH HOH . E 4 HOH A 13 313 21 HOH HOH . E 4 HOH A 14 314 119 HOH HOH . E 4 HOH A 15 315 57 HOH HOH . E 4 HOH A 16 316 8 HOH HOH . E 4 HOH A 17 317 109 HOH HOH . E 4 HOH A 18 318 16 HOH HOH . E 4 HOH A 19 319 47 HOH HOH . E 4 HOH A 20 320 24 HOH HOH . E 4 HOH A 21 321 104 HOH HOH . E 4 HOH A 22 322 4 HOH HOH . E 4 HOH A 23 323 44 HOH HOH . E 4 HOH A 24 324 63 HOH HOH . E 4 HOH A 25 325 17 HOH HOH . E 4 HOH A 26 326 105 HOH HOH . E 4 HOH A 27 327 3 HOH HOH . E 4 HOH A 28 328 45 HOH HOH . E 4 HOH A 29 329 13 HOH HOH . E 4 HOH A 30 330 23 HOH HOH . E 4 HOH A 31 331 68 HOH HOH . E 4 HOH A 32 332 97 HOH HOH . E 4 HOH A 33 333 59 HOH HOH . E 4 HOH A 34 334 66 HOH HOH . E 4 HOH A 35 335 67 HOH HOH . E 4 HOH A 36 336 5 HOH HOH . E 4 HOH A 37 337 58 HOH HOH . E 4 HOH A 38 338 14 HOH HOH . E 4 HOH A 39 339 48 HOH HOH . E 4 HOH A 40 340 98 HOH HOH . E 4 HOH A 41 341 35 HOH HOH . E 4 HOH A 42 342 51 HOH HOH . E 4 HOH A 43 343 72 HOH HOH . E 4 HOH A 44 344 101 HOH HOH . E 4 HOH A 45 345 64 HOH HOH . E 4 HOH A 46 346 18 HOH HOH . E 4 HOH A 47 347 92 HOH HOH . E 4 HOH A 48 348 127 HOH HOH . E 4 HOH A 49 349 82 HOH HOH . E 4 HOH A 50 350 142 HOH HOH . E 4 HOH A 51 351 9 HOH HOH . E 4 HOH A 52 352 37 HOH HOH . E 4 HOH A 53 353 11 HOH HOH . E 4 HOH A 54 354 74 HOH HOH . E 4 HOH A 55 355 49 HOH HOH . E 4 HOH A 56 356 33 HOH HOH . E 4 HOH A 57 357 34 HOH HOH . E 4 HOH A 58 358 46 HOH HOH . E 4 HOH A 59 359 12 HOH HOH . E 4 HOH A 60 360 10 HOH HOH . E 4 HOH A 61 361 32 HOH HOH . E 4 HOH A 62 362 38 HOH HOH . E 4 HOH A 63 363 7 HOH HOH . E 4 HOH A 64 364 76 HOH HOH . E 4 HOH A 65 365 69 HOH HOH . E 4 HOH A 66 366 22 HOH HOH . E 4 HOH A 67 367 86 HOH HOH . E 4 HOH A 68 368 36 HOH HOH . E 4 HOH A 69 369 91 HOH HOH . E 4 HOH A 70 370 39 HOH HOH . E 4 HOH A 71 371 27 HOH HOH . E 4 HOH A 72 372 20 HOH HOH . E 4 HOH A 73 373 43 HOH HOH . E 4 HOH A 74 374 60 HOH HOH . E 4 HOH A 75 375 96 HOH HOH . E 4 HOH A 76 376 40 HOH HOH . E 4 HOH A 77 377 78 HOH HOH . E 4 HOH A 78 378 42 HOH HOH . E 4 HOH A 79 379 28 HOH HOH . E 4 HOH A 80 380 114 HOH HOH . E 4 HOH A 81 381 143 HOH HOH . E 4 HOH A 82 382 50 HOH HOH . E 4 HOH A 83 383 2 HOH HOH . E 4 HOH A 84 384 99 HOH HOH . E 4 HOH A 85 385 135 HOH HOH . E 4 HOH A 86 386 25 HOH HOH . E 4 HOH A 87 387 55 HOH HOH . E 4 HOH A 88 388 102 HOH HOH . E 4 HOH A 89 389 126 HOH HOH . E 4 HOH A 90 390 29 HOH HOH . E 4 HOH A 91 391 70 HOH HOH . E 4 HOH A 92 392 1 HOH HOH . E 4 HOH A 93 393 84 HOH HOH . E 4 HOH A 94 394 79 HOH HOH . E 4 HOH A 95 395 137 HOH HOH . E 4 HOH A 96 396 61 HOH HOH . E 4 HOH A 97 397 88 HOH HOH . E 4 HOH A 98 398 54 HOH HOH . E 4 HOH A 99 399 77 HOH HOH . E 4 HOH A 100 400 121 HOH HOH . E 4 HOH A 101 401 6 HOH HOH . E 4 HOH A 102 402 118 HOH HOH . E 4 HOH A 103 403 130 HOH HOH . E 4 HOH A 104 404 106 HOH HOH . E 4 HOH A 105 405 107 HOH HOH . E 4 HOH A 106 406 53 HOH HOH . E 4 HOH A 107 407 112 HOH HOH . E 4 HOH A 108 408 87 HOH HOH . E 4 HOH A 109 409 111 HOH HOH . E 4 HOH A 110 410 110 HOH HOH . E 4 HOH A 111 411 93 HOH HOH . E 4 HOH A 112 412 75 HOH HOH . E 4 HOH A 113 413 115 HOH HOH . E 4 HOH A 114 414 123 HOH HOH . E 4 HOH A 115 415 103 HOH HOH . E 4 HOH A 116 416 62 HOH HOH . E 4 HOH A 117 417 83 HOH HOH . E 4 HOH A 118 418 131 HOH HOH . E 4 HOH A 119 419 117 HOH HOH . E 4 HOH A 120 420 124 HOH HOH . E 4 HOH A 121 421 95 HOH HOH . E 4 HOH A 122 422 145 HOH HOH . E 4 HOH A 123 423 71 HOH HOH . E 4 HOH A 124 424 120 HOH HOH . E 4 HOH A 125 425 128 HOH HOH . E 4 HOH A 126 426 80 HOH HOH . E 4 HOH A 127 427 81 HOH HOH . E 4 HOH A 128 428 116 HOH HOH . E 4 HOH A 129 429 125 HOH HOH . E 4 HOH A 130 430 144 HOH HOH . E 4 HOH A 131 431 100 HOH HOH . E 4 HOH A 132 432 89 HOH HOH . E 4 HOH A 133 433 85 HOH HOH . E 4 HOH A 134 434 140 HOH HOH . E 4 HOH A 135 435 138 HOH HOH . E 4 HOH A 136 436 136 HOH HOH . E 4 HOH A 137 437 56 HOH HOH . E 4 HOH A 138 438 113 HOH HOH . E 4 HOH A 139 439 94 HOH HOH . E 4 HOH A 140 440 129 HOH HOH . E 4 HOH A 141 441 141 HOH HOH . E 4 HOH A 142 442 133 HOH HOH . E 4 HOH A 143 443 52 HOH HOH . E 4 HOH A 144 444 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 16.662 8.991 -10.874 1 40.01 ? C TRS 203 A 1 HETATM 2 C C1 TRS . . . D 3 17.557 9.782 -9.98 1 36.83 ? C1 TRS 203 A 1 HETATM 3 C C2 TRS . . . D 3 17.377 8.651 -12.136 1 38.96 ? C2 TRS 203 A 1 HETATM 4 C C3 TRS . . . D 3 16.267 7.729 -10.183 1 40.01 ? C3 TRS 203 A 1 HETATM 5 N N TRS . . . D 3 15.492 9.754 -11.217 1 35.68 ? N TRS 203 A 1 HETATM 6 O O1 TRS . . . D 3 17.989 11.01 -10.445 1 37.8 ? O1 TRS 203 A 1 HETATM 7 O O2 TRS . . . D 3 16.56 8.446 -13.223 1 40.01 ? O2 TRS 203 A 1 HETATM 8 O O3 TRS . . . D 3 17.262 6.797 -9.967 1 42.94 ? O3 TRS 203 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 8 #