data_6D63 # _model_server_result.job_id AuVM-6fo2CLqUFx5NFLBJQ _model_server_result.datetime_utc '2024-10-19 20:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":201}' # _entry.id 6D63 # _exptl.entry_id 6D63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-oxopentanedioic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.69 _cell.angle_gamma 90 _cell.entry_id 6D63 _cell.length_a 99.724 _cell.length_b 74.656 _cell.length_c 103.611 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N,P,Q 1 1 C,D,R,S 2 1 E,F,T,U 3 1 G,H,V,W 4 1 I,J,O,X,Y 5 1 K,L,Z,AA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id 6JN _chem_comp.mon_nstd_flag . _chem_comp.name '3-oxopentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG CAE 6JN doub 1 n n CAD CAE 6JN sing 2 n n CAD CAC 6JN sing 3 n n CAE OAF 6JN sing 4 n n OAH CAC 6JN doub 5 n n CAC CAA 6JN sing 6 n n CAA CAB 6JN sing 7 n n CAB OAJ 6JN doub 8 n n CAB OAI 6JN sing 9 n n CAA H1 6JN sing 10 n n CAA H2 6JN sing 11 n n CAD H3 6JN sing 12 n n CAD H4 6JN sing 13 n n OAF H5 6JN sing 14 n n OAI H6 6JN sing 15 n n # _atom_sites.entry_id 6D63 _atom_sites.fract_transf_matrix[1][1] 0.010028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001175 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 6JN A 1 201 4 6JN UNL . N 2 6JN B 1 201 2 6JN UNL . O 2 6JN J 1 201 3 6JN UNL . P 3 HOH A 1 301 265 HOH HOH . P 3 HOH A 2 302 142 HOH HOH . P 3 HOH A 3 303 194 HOH HOH . P 3 HOH A 4 304 14 HOH HOH . P 3 HOH A 5 305 9 HOH HOH . P 3 HOH A 6 306 81 HOH HOH . P 3 HOH A 7 307 181 HOH HOH . P 3 HOH A 8 308 60 HOH HOH . P 3 HOH A 9 309 55 HOH HOH . P 3 HOH A 10 310 34 HOH HOH . P 3 HOH A 11 311 103 HOH HOH . P 3 HOH A 12 312 151 HOH HOH . P 3 HOH A 13 313 188 HOH HOH . P 3 HOH A 14 314 104 HOH HOH . P 3 HOH A 15 315 183 HOH HOH . P 3 HOH A 16 316 200 HOH HOH . P 3 HOH A 17 317 135 HOH HOH . P 3 HOH A 18 318 56 HOH HOH . P 3 HOH A 19 319 91 HOH HOH . P 3 HOH A 20 320 62 HOH HOH . P 3 HOH A 21 321 20 HOH HOH . P 3 HOH A 22 322 149 HOH HOH . P 3 HOH A 23 323 100 HOH HOH . P 3 HOH A 24 324 195 HOH HOH . P 3 HOH A 25 325 134 HOH HOH . P 3 HOH A 26 326 282 HOH HOH . P 3 HOH A 27 327 122 HOH HOH . P 3 HOH A 28 328 71 HOH HOH . P 3 HOH A 29 329 17 HOH HOH . P 3 HOH A 30 330 47 HOH HOH . P 3 HOH A 31 331 3 HOH HOH . P 3 HOH A 32 332 162 HOH HOH . P 3 HOH A 33 333 253 HOH HOH . P 3 HOH A 34 334 156 HOH HOH . P 3 HOH A 35 335 266 HOH HOH . P 3 HOH A 36 336 45 HOH HOH . P 3 HOH A 37 337 126 HOH HOH . P 3 HOH A 38 338 262 HOH HOH . Q 3 HOH B 1 301 28 HOH HOH . Q 3 HOH B 2 302 15 HOH HOH . Q 3 HOH B 3 303 16 HOH HOH . Q 3 HOH B 4 304 69 HOH HOH . Q 3 HOH B 5 305 241 HOH HOH . Q 3 HOH B 6 306 13 HOH HOH . Q 3 HOH B 7 307 87 HOH HOH . Q 3 HOH B 8 308 206 HOH HOH . Q 3 HOH B 9 309 92 HOH HOH . Q 3 HOH B 10 310 178 HOH HOH . Q 3 HOH B 11 311 42 HOH HOH . Q 3 HOH B 12 312 19 HOH HOH . Q 3 HOH B 13 313 145 HOH HOH . Q 3 HOH B 14 314 78 HOH HOH . Q 3 HOH B 15 315 267 HOH HOH . Q 3 HOH B 16 316 222 HOH HOH . Q 3 HOH B 17 317 27 HOH HOH . Q 3 HOH B 18 318 110 HOH HOH . Q 3 HOH B 19 319 59 HOH HOH . Q 3 HOH B 20 320 159 HOH HOH . Q 3 HOH B 21 321 261 HOH HOH . Q 3 HOH B 22 322 286 HOH HOH . Q 3 HOH B 23 323 33 HOH HOH . Q 3 HOH B 24 324 38 HOH HOH . Q 3 HOH B 25 325 72 HOH HOH . Q 3 HOH B 26 326 260 HOH HOH . R 3 HOH C 1 201 254 HOH HOH . R 3 HOH C 2 202 263 HOH HOH . R 3 HOH C 3 203 225 HOH HOH . R 3 HOH C 4 204 153 HOH HOH . R 3 HOH C 5 205 76 HOH HOH . R 3 HOH C 6 206 190 HOH HOH . R 3 HOH C 7 207 214 HOH HOH . R 3 HOH C 8 208 46 HOH HOH . R 3 HOH C 9 209 277 HOH HOH . R 3 HOH C 10 210 172 HOH HOH . R 3 HOH C 11 211 77 HOH HOH . R 3 HOH C 12 212 176 HOH HOH . R 3 HOH C 13 213 150 HOH HOH . R 3 HOH C 14 214 242 HOH HOH . R 3 HOH C 15 215 39 HOH HOH . R 3 HOH C 16 216 65 HOH HOH . R 3 HOH C 17 217 6 HOH HOH . R 3 HOH C 18 218 64 HOH HOH . R 3 HOH C 19 219 155 HOH HOH . R 3 HOH C 20 220 5 HOH HOH . R 3 HOH C 21 221 240 HOH HOH . R 3 HOH C 22 222 207 HOH HOH . R 3 HOH C 23 223 278 HOH HOH . R 3 HOH C 24 224 4 HOH HOH . R 3 HOH C 25 225 243 HOH HOH . R 3 HOH C 26 226 275 HOH HOH . R 3 HOH C 27 227 276 HOH HOH . R 3 HOH C 28 228 273 HOH HOH . R 3 HOH C 29 229 264 HOH HOH . R 3 HOH C 30 230 249 HOH HOH . R 3 HOH C 31 231 270 HOH HOH . R 3 HOH C 32 232 271 HOH HOH . R 3 HOH C 33 233 272 HOH HOH . S 3 HOH D 1 201 274 HOH HOH . S 3 HOH D 2 202 239 HOH HOH . S 3 HOH D 3 203 127 HOH HOH . S 3 HOH D 4 204 95 HOH HOH . S 3 HOH D 5 205 204 HOH HOH . S 3 HOH D 6 206 84 HOH HOH . S 3 HOH D 7 207 220 HOH HOH . S 3 HOH D 8 208 101 HOH HOH . S 3 HOH D 9 209 96 HOH HOH . S 3 HOH D 10 210 32 HOH HOH . S 3 HOH D 11 211 107 HOH HOH . S 3 HOH D 12 212 139 HOH HOH . S 3 HOH D 13 213 115 HOH HOH . S 3 HOH D 14 214 287 HOH HOH . S 3 HOH D 15 215 105 HOH HOH . S 3 HOH D 16 216 106 HOH HOH . S 3 HOH D 17 217 163 HOH HOH . S 3 HOH D 18 218 280 HOH HOH . S 3 HOH D 19 219 52 HOH HOH . S 3 HOH D 20 220 279 HOH HOH . S 3 HOH D 21 221 196 HOH HOH . S 3 HOH D 22 222 281 HOH HOH . S 3 HOH D 23 223 82 HOH HOH . S 3 HOH D 24 224 165 HOH HOH . S 3 HOH D 25 225 86 HOH HOH . S 3 HOH D 26 226 201 HOH HOH . S 3 HOH D 27 227 237 HOH HOH . T 3 HOH E 1 201 255 HOH HOH . T 3 HOH E 2 202 205 HOH HOH . T 3 HOH E 3 203 152 HOH HOH . T 3 HOH E 4 204 186 HOH HOH . T 3 HOH E 5 205 259 HOH HOH . T 3 HOH E 6 206 36 HOH HOH . T 3 HOH E 7 207 49 HOH HOH . T 3 HOH E 8 208 119 HOH HOH . T 3 HOH E 9 209 57 HOH HOH . T 3 HOH E 10 210 54 HOH HOH . T 3 HOH E 11 211 26 HOH HOH . T 3 HOH E 12 212 79 HOH HOH . T 3 HOH E 13 213 35 HOH HOH . T 3 HOH E 14 214 212 HOH HOH . T 3 HOH E 15 215 143 HOH HOH . T 3 HOH E 16 216 121 HOH HOH . T 3 HOH E 17 217 137 HOH HOH . T 3 HOH E 18 218 50 HOH HOH . T 3 HOH E 19 219 288 HOH HOH . T 3 HOH E 20 220 283 HOH HOH . T 3 HOH E 21 221 224 HOH HOH . U 3 HOH F 1 201 51 HOH HOH . U 3 HOH F 2 202 23 HOH HOH . U 3 HOH F 3 203 99 HOH HOH . U 3 HOH F 4 204 67 HOH HOH . U 3 HOH F 5 205 136 HOH HOH . U 3 HOH F 6 206 94 HOH HOH . U 3 HOH F 7 207 74 HOH HOH . U 3 HOH F 8 208 102 HOH HOH . U 3 HOH F 9 209 48 HOH HOH . U 3 HOH F 10 210 219 HOH HOH . U 3 HOH F 11 211 164 HOH HOH . U 3 HOH F 12 212 85 HOH HOH . U 3 HOH F 13 213 111 HOH HOH . U 3 HOH F 14 214 209 HOH HOH . U 3 HOH F 15 215 180 HOH HOH . U 3 HOH F 16 216 228 HOH HOH . U 3 HOH F 17 217 123 HOH HOH . U 3 HOH F 18 218 215 HOH HOH . U 3 HOH F 19 219 11 HOH HOH . U 3 HOH F 20 220 129 HOH HOH . U 3 HOH F 21 221 93 HOH HOH . U 3 HOH F 22 222 175 HOH HOH . U 3 HOH F 23 223 169 HOH HOH . U 3 HOH F 24 224 221 HOH HOH . V 3 HOH G 1 201 244 HOH HOH . V 3 HOH G 2 202 124 HOH HOH . V 3 HOH G 3 203 83 HOH HOH . V 3 HOH G 4 204 191 HOH HOH . V 3 HOH G 5 205 88 HOH HOH . V 3 HOH G 6 206 230 HOH HOH . V 3 HOH G 7 207 133 HOH HOH . V 3 HOH G 8 208 245 HOH HOH . V 3 HOH G 9 209 98 HOH HOH . V 3 HOH G 10 210 187 HOH HOH . V 3 HOH G 11 211 268 HOH HOH . V 3 HOH G 12 212 160 HOH HOH . V 3 HOH G 13 213 182 HOH HOH . V 3 HOH G 14 214 198 HOH HOH . V 3 HOH G 15 215 218 HOH HOH . V 3 HOH G 16 216 174 HOH HOH . V 3 HOH G 17 217 247 HOH HOH . V 3 HOH G 18 218 89 HOH HOH . V 3 HOH G 19 219 125 HOH HOH . V 3 HOH G 20 220 231 HOH HOH . W 3 HOH H 1 201 236 HOH HOH . W 3 HOH H 2 202 117 HOH HOH . W 3 HOH H 3 203 210 HOH HOH . W 3 HOH H 4 204 197 HOH HOH . W 3 HOH H 5 205 61 HOH HOH . W 3 HOH H 6 206 199 HOH HOH . W 3 HOH H 7 207 70 HOH HOH . W 3 HOH H 8 208 24 HOH HOH . W 3 HOH H 9 209 232 HOH HOH . W 3 HOH H 10 210 31 HOH HOH . W 3 HOH H 11 211 216 HOH HOH . W 3 HOH H 12 212 80 HOH HOH . W 3 HOH H 13 213 166 HOH HOH . W 3 HOH H 14 214 113 HOH HOH . W 3 HOH H 15 215 192 HOH HOH . W 3 HOH H 16 216 251 HOH HOH . W 3 HOH H 17 217 158 HOH HOH . W 3 HOH H 18 218 90 HOH HOH . W 3 HOH H 19 219 193 HOH HOH . W 3 HOH H 20 220 189 HOH HOH . X 3 HOH I 1 201 10 HOH HOH . X 3 HOH I 2 202 130 HOH HOH . X 3 HOH I 3 203 146 HOH HOH . X 3 HOH I 4 204 161 HOH HOH . X 3 HOH I 5 205 114 HOH HOH . X 3 HOH I 6 206 12 HOH HOH . X 3 HOH I 7 207 284 HOH HOH . X 3 HOH I 8 208 252 HOH HOH . X 3 HOH I 9 209 238 HOH HOH . X 3 HOH I 10 210 258 HOH HOH . X 3 HOH I 11 211 18 HOH HOH . X 3 HOH I 12 212 184 HOH HOH . X 3 HOH I 13 213 211 HOH HOH . X 3 HOH I 14 214 29 HOH HOH . X 3 HOH I 15 215 68 HOH HOH . X 3 HOH I 16 216 109 HOH HOH . X 3 HOH I 17 217 58 HOH HOH . Y 3 HOH J 1 301 108 HOH HOH . Y 3 HOH J 2 302 138 HOH HOH . Y 3 HOH J 3 303 141 HOH HOH . Y 3 HOH J 4 304 202 HOH HOH . Y 3 HOH J 5 305 203 HOH HOH . Y 3 HOH J 6 306 73 HOH HOH . Y 3 HOH J 7 307 256 HOH HOH . Y 3 HOH J 8 308 144 HOH HOH . Y 3 HOH J 9 309 128 HOH HOH . Y 3 HOH J 10 310 37 HOH HOH . Y 3 HOH J 11 311 21 HOH HOH . Y 3 HOH J 12 312 147 HOH HOH . Y 3 HOH J 13 313 118 HOH HOH . Y 3 HOH J 14 314 75 HOH HOH . Y 3 HOH J 15 315 154 HOH HOH . Y 3 HOH J 16 316 63 HOH HOH . Y 3 HOH J 17 317 173 HOH HOH . Y 3 HOH J 18 318 167 HOH HOH . Y 3 HOH J 19 319 170 HOH HOH . Y 3 HOH J 20 320 246 HOH HOH . Y 3 HOH J 21 321 2 HOH HOH . Y 3 HOH J 22 322 223 HOH HOH . Y 3 HOH J 23 323 131 HOH HOH . Y 3 HOH J 24 324 1 HOH HOH . Y 3 HOH J 25 325 177 HOH HOH . Y 3 HOH J 26 326 285 HOH HOH . Y 3 HOH J 27 327 269 HOH HOH . Y 3 HOH J 28 328 227 HOH HOH . Y 3 HOH J 29 329 229 HOH HOH . Y 3 HOH J 30 330 148 HOH HOH . Z 3 HOH K 1 201 66 HOH HOH . Z 3 HOH K 2 202 140 HOH HOH . Z 3 HOH K 3 203 250 HOH HOH . Z 3 HOH K 4 204 40 HOH HOH . Z 3 HOH K 5 205 97 HOH HOH . Z 3 HOH K 6 206 157 HOH HOH . Z 3 HOH K 7 207 208 HOH HOH . Z 3 HOH K 8 208 226 HOH HOH . Z 3 HOH K 9 209 41 HOH HOH . Z 3 HOH K 10 210 22 HOH HOH . Z 3 HOH K 11 211 120 HOH HOH . Z 3 HOH K 12 212 213 HOH HOH . Z 3 HOH K 13 213 132 HOH HOH . Z 3 HOH K 14 214 179 HOH HOH . Z 3 HOH K 15 215 185 HOH HOH . Z 3 HOH K 16 216 8 HOH HOH . Z 3 HOH K 17 217 43 HOH HOH . Z 3 HOH K 18 218 233 HOH HOH . AA 3 HOH L 1 201 248 HOH HOH . AA 3 HOH L 2 202 235 HOH HOH . AA 3 HOH L 3 203 234 HOH HOH . AA 3 HOH L 4 204 7 HOH HOH . AA 3 HOH L 5 205 30 HOH HOH . AA 3 HOH L 6 206 217 HOH HOH . AA 3 HOH L 7 207 257 HOH HOH . AA 3 HOH L 8 208 168 HOH HOH . AA 3 HOH L 9 209 53 HOH HOH . AA 3 HOH L 10 210 116 HOH HOH . AA 3 HOH L 11 211 171 HOH HOH . AA 3 HOH L 12 212 44 HOH HOH . AA 3 HOH L 13 213 25 HOH HOH . AA 3 HOH L 14 214 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6JN . . . N 2 49.125 -3.083 34.226 1 57.07 ? CAA 6JN 201 B 1 HETATM 2 C CAB 6JN . . . N 2 48.532 -4.469 34.322 1 60.33 ? CAB 6JN 201 B 1 HETATM 3 C CAC 6JN . . . N 2 49.303 -2.447 35.573 1 55.13 ? CAC 6JN 201 B 1 HETATM 4 C CAD 6JN . . . N 2 48.197 -2.368 36.578 1 55.87 ? CAD 6JN 201 B 1 HETATM 5 C CAE 6JN . . . N 2 47.495 -1.017 36.657 1 61.22 ? CAE 6JN 201 B 1 HETATM 6 O OAF 6JN . . . N 2 46.229 -1.027 36.738 1 59.66 ? OAF 6JN 201 B 1 HETATM 7 O OAG 6JN . . . N 2 48.26 -0.016 36.65 1 71.05 ? OAG 6JN 201 B 1 HETATM 8 O OAH 6JN . . . N 2 50.388 -2.001 35.885 1 54.31 ? OAH 6JN 201 B 1 HETATM 9 O OAI 6JN . . . N 2 49.187 -5.304 35.015 1 62.11 ? OAI 6JN 201 B 1 HETATM 10 O OAJ 6JN . . . N 2 47.452 -4.606 33.682 1 58.75 ? OAJ 6JN 201 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #