data_6D6H # _model_server_result.job_id ivF85vcpCKuqKNMjFfQJmA _model_server_result.datetime_utc '2024-11-06 10:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6D6H # _exptl.entry_id 6D6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.27 _cell.angle_beta 71.251 _cell.angle_gamma 68.505 _cell.entry_id 6D6H _cell.length_a 26.993 _cell.length_b 31.687 _cell.length_c 33.989 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 258 n n N O2 NO3 sing 259 n n N O3 NO3 sing 260 n n # _atom_sites.entry_id 6D6H _atom_sites.fract_transf_matrix[1][1] 0.037047 _atom_sites.fract_transf_matrix[1][2] -0.014589 _atom_sites.fract_transf_matrix[1][3] -0.014095 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033918 _atom_sites.fract_transf_matrix[2][3] 0.003388 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 201 201 NO3 NO3 . C 2 NO3 A 1 202 202 NO3 NO3 . D 2 NO3 A 1 203 203 NO3 NO3 . E 2 NO3 A 1 204 204 NO3 NO3 . F 2 NO3 A 1 205 205 NO3 NO3 . G 2 NO3 A 1 206 206 NO3 NO3 . H 2 NO3 A 1 207 207 NO3 NO3 . I 3 MRD A 1 208 208 MRD MRD . J 3 MRD A 1 209 209 MRD MRD . K 4 HOH A 1 301 301 HOH HOH . K 4 HOH A 2 302 302 HOH HOH . K 4 HOH A 3 303 303 HOH HOH . K 4 HOH A 4 304 305 HOH HOH . K 4 HOH A 5 305 306 HOH HOH . K 4 HOH A 6 306 307 HOH HOH . K 4 HOH A 7 307 304 HOH HOH . K 4 HOH A 8 308 308 HOH HOH . K 4 HOH A 9 309 311 HOH HOH . K 4 HOH A 10 310 309 HOH HOH . K 4 HOH A 11 311 313 HOH HOH . K 4 HOH A 12 312 315 HOH HOH . K 4 HOH A 13 313 310 HOH HOH . K 4 HOH A 14 314 316 HOH HOH . K 4 HOH A 15 315 312 HOH HOH . K 4 HOH A 16 316 314 HOH HOH . K 4 HOH A 17 317 317 HOH HOH . K 4 HOH A 18 318 321 HOH HOH . K 4 HOH A 19 319 320 HOH HOH . K 4 HOH A 20 320 324 HOH HOH . K 4 HOH A 21 321 318 HOH HOH . K 4 HOH A 22 322 326 HOH HOH . K 4 HOH A 23 323 319 HOH HOH . K 4 HOH A 24 324 322 HOH HOH . K 4 HOH A 25 325 323 HOH HOH . K 4 HOH A 26 326 331 HOH HOH . K 4 HOH A 27 327 330 HOH HOH . K 4 HOH A 28 328 325 HOH HOH . K 4 HOH A 29 329 328 HOH HOH . K 4 HOH A 30 330 329 HOH HOH . K 4 HOH A 31 331 334 HOH HOH . K 4 HOH A 32 332 335 HOH HOH . K 4 HOH A 33 333 327 HOH HOH . K 4 HOH A 34 334 333 HOH HOH . K 4 HOH A 35 335 343 HOH HOH . K 4 HOH A 36 336 332 HOH HOH . K 4 HOH A 37 337 339 HOH HOH . K 4 HOH A 38 338 338 HOH HOH . K 4 HOH A 39 339 348 HOH HOH . K 4 HOH A 40 340 337 HOH HOH . K 4 HOH A 41 341 349 HOH HOH . K 4 HOH A 42 342 346 HOH HOH . K 4 HOH A 43 343 345 HOH HOH . K 4 HOH A 44 344 351 HOH HOH . K 4 HOH A 45 345 344 HOH HOH . K 4 HOH A 46 346 336 HOH HOH . K 4 HOH A 47 347 353 HOH HOH . K 4 HOH A 48 348 342 HOH HOH . K 4 HOH A 49 349 347 HOH HOH . K 4 HOH A 50 350 354 HOH HOH . K 4 HOH A 51 351 340 HOH HOH . K 4 HOH A 52 352 341 HOH HOH . K 4 HOH A 53 353 352 HOH HOH . K 4 HOH A 54 354 355 HOH HOH . K 4 HOH A 55 355 367 HOH HOH . K 4 HOH A 56 356 350 HOH HOH . K 4 HOH A 57 357 356 HOH HOH . K 4 HOH A 58 358 358 HOH HOH . K 4 HOH A 59 359 363 HOH HOH . K 4 HOH A 60 360 360 HOH HOH . K 4 HOH A 61 361 359 HOH HOH . K 4 HOH A 62 362 357 HOH HOH . K 4 HOH A 63 363 365 HOH HOH . K 4 HOH A 64 364 362 HOH HOH . K 4 HOH A 65 365 374 HOH HOH . K 4 HOH A 66 366 366 HOH HOH . K 4 HOH A 67 367 364 HOH HOH . K 4 HOH A 68 368 370 HOH HOH . K 4 HOH A 69 369 372 HOH HOH . K 4 HOH A 70 370 361 HOH HOH . K 4 HOH A 71 371 368 HOH HOH . K 4 HOH A 72 372 369 HOH HOH . K 4 HOH A 73 373 379 HOH HOH . K 4 HOH A 74 374 377 HOH HOH . K 4 HOH A 75 375 373 HOH HOH . K 4 HOH A 76 376 378 HOH HOH . K 4 HOH A 77 377 371 HOH HOH . K 4 HOH A 78 378 376 HOH HOH . K 4 HOH A 79 379 381 HOH HOH . K 4 HOH A 80 380 382 HOH HOH . K 4 HOH A 81 381 375 HOH HOH . K 4 HOH A 82 382 380 HOH HOH . K 4 HOH A 83 383 383 HOH HOH . K 4 HOH A 84 384 385 HOH HOH . K 4 HOH A 85 385 384 HOH HOH . K 4 HOH A 86 386 387 HOH HOH . K 4 HOH A 87 387 388 HOH HOH . K 4 HOH A 88 388 386 HOH HOH . K 4 HOH A 89 389 390 HOH HOH . K 4 HOH A 90 390 389 HOH HOH . K 4 HOH A 91 391 392 HOH HOH . K 4 HOH A 92 392 393 HOH HOH . K 4 HOH A 93 393 395 HOH HOH . K 4 HOH A 94 394 391 HOH HOH . K 4 HOH A 95 395 394 HOH HOH . K 4 HOH A 96 396 397 HOH HOH . K 4 HOH A 97 397 396 HOH HOH . K 4 HOH A 98 398 400 HOH HOH . K 4 HOH A 99 399 401 HOH HOH . K 4 HOH A 100 400 398 HOH HOH . K 4 HOH A 101 401 399 HOH HOH . K 4 HOH A 102 402 402 HOH HOH . K 4 HOH A 103 403 405 HOH HOH . K 4 HOH A 104 404 404 HOH HOH . K 4 HOH A 105 405 403 HOH HOH . K 4 HOH A 106 406 406 HOH HOH . K 4 HOH A 107 407 407 HOH HOH . K 4 HOH A 108 408 410 HOH HOH . K 4 HOH A 109 409 408 HOH HOH . K 4 HOH A 110 410 411 HOH HOH . K 4 HOH A 111 411 409 HOH HOH . K 4 HOH A 112 412 412 HOH HOH . K 4 HOH A 113 413 413 HOH HOH . K 4 HOH A 114 414 414 HOH HOH . K 4 HOH A 115 415 415 HOH HOH . K 4 HOH A 116 416 417 HOH HOH . K 4 HOH A 117 417 416 HOH HOH . K 4 HOH A 118 418 418 HOH HOH . K 4 HOH A 119 419 419 HOH HOH . K 4 HOH A 120 420 420 HOH HOH . K 4 HOH A 121 421 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . B 2 -10.074 -0.344 -31.446 1 13.17 ? N NO3 201 A 1 HETATM 2 O O1 NO3 . . . B 2 -10.651 -1.445 -31.206 1 6.82 ? O1 NO3 201 A 1 HETATM 3 O O2 NO3 . . . B 2 -8.818 -0.302 -31.575 1 21.28 ? O2 NO3 201 A 1 HETATM 4 O O3 NO3 . . . B 2 -10.754 0.715 -31.559 1 28.67 ? O3 NO3 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #