data_6D6H
#
_model_server_result.job_id            4Dr4jVPWZ9gEzql6adl1kA 
_model_server_result.datetime_utc      '2024-11-06 10:26:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d6h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":209}' 
#
_entry.id    6D6H 
#
_exptl.entry_id    6D6H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.27 
_cell.angle_beta          71.251 
_cell.angle_gamma         68.505 
_cell.entry_id            6D6H 
_cell.length_a            26.993 
_cell.length_b            31.687 
_cell.length_c            33.989 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D6H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 237 n n 
C1 H1C1 MRD sing 238 n n 
C1 H1C2 MRD sing 239 n n 
C1 H1C3 MRD sing 240 n n 
C2 O2 MRD sing 241 n n 
C2 CM MRD sing 242 n n 
C2 C3 MRD sing 243 n n 
O2 H2 MRD sing 244 n n 
CM HMC1 MRD sing 245 n n 
CM HMC2 MRD sing 246 n n 
CM HMC3 MRD sing 247 n n 
C3 C4 MRD sing 248 n n 
C3 H3C1 MRD sing 249 n n 
C3 H3C2 MRD sing 250 n n 
C4 O4 MRD sing 251 n n 
C4 C5 MRD sing 252 n n 
C4 H4 MRD sing 253 n n 
O4 HA MRD sing 254 n n 
C5 H5C1 MRD sing 255 n n 
C5 H5C2 MRD sing 256 n n 
C5 H5C3 MRD sing 257 n n 
#
_atom_sites.entry_id                     6D6H 
_atom_sites.fract_transf_matrix[1][1]    0.037047 
_atom_sites.fract_transf_matrix[1][2]    -0.014589 
_atom_sites.fract_transf_matrix[1][3]    -0.014095 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.033918 
_atom_sites.fract_transf_matrix[2][3]    0.003388 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 A 1 201 201 NO3 NO3 . 
C 2 NO3 A 1 202 202 NO3 NO3 . 
D 2 NO3 A 1 203 203 NO3 NO3 . 
E 2 NO3 A 1 204 204 NO3 NO3 . 
F 2 NO3 A 1 205 205 NO3 NO3 . 
G 2 NO3 A 1 206 206 NO3 NO3 . 
H 2 NO3 A 1 207 207 NO3 NO3 . 
I 3 MRD A 1 208 208 MRD MRD . 
J 3 MRD A 1 209 209 MRD MRD . 
K 4 HOH A 1 301 301 HOH HOH . 
K 4 HOH A 2 302 302 HOH HOH . 
K 4 HOH A 3 303 303 HOH HOH . 
K 4 HOH A 4 304 305 HOH HOH . 
K 4 HOH A 5 305 306 HOH HOH . 
K 4 HOH A 6 306 307 HOH HOH . 
K 4 HOH A 7 307 304 HOH HOH . 
K 4 HOH A 8 308 308 HOH HOH . 
K 4 HOH A 9 309 311 HOH HOH . 
K 4 HOH A 10 310 309 HOH HOH . 
K 4 HOH A 11 311 313 HOH HOH . 
K 4 HOH A 12 312 315 HOH HOH . 
K 4 HOH A 13 313 310 HOH HOH . 
K 4 HOH A 14 314 316 HOH HOH . 
K 4 HOH A 15 315 312 HOH HOH . 
K 4 HOH A 16 316 314 HOH HOH . 
K 4 HOH A 17 317 317 HOH HOH . 
K 4 HOH A 18 318 321 HOH HOH . 
K 4 HOH A 19 319 320 HOH HOH . 
K 4 HOH A 20 320 324 HOH HOH . 
K 4 HOH A 21 321 318 HOH HOH . 
K 4 HOH A 22 322 326 HOH HOH . 
K 4 HOH A 23 323 319 HOH HOH . 
K 4 HOH A 24 324 322 HOH HOH . 
K 4 HOH A 25 325 323 HOH HOH . 
K 4 HOH A 26 326 331 HOH HOH . 
K 4 HOH A 27 327 330 HOH HOH . 
K 4 HOH A 28 328 325 HOH HOH . 
K 4 HOH A 29 329 328 HOH HOH . 
K 4 HOH A 30 330 329 HOH HOH . 
K 4 HOH A 31 331 334 HOH HOH . 
K 4 HOH A 32 332 335 HOH HOH . 
K 4 HOH A 33 333 327 HOH HOH . 
K 4 HOH A 34 334 333 HOH HOH . 
K 4 HOH A 35 335 343 HOH HOH . 
K 4 HOH A 36 336 332 HOH HOH . 
K 4 HOH A 37 337 339 HOH HOH . 
K 4 HOH A 38 338 338 HOH HOH . 
K 4 HOH A 39 339 348 HOH HOH . 
K 4 HOH A 40 340 337 HOH HOH . 
K 4 HOH A 41 341 349 HOH HOH . 
K 4 HOH A 42 342 346 HOH HOH . 
K 4 HOH A 43 343 345 HOH HOH . 
K 4 HOH A 44 344 351 HOH HOH . 
K 4 HOH A 45 345 344 HOH HOH . 
K 4 HOH A 46 346 336 HOH HOH . 
K 4 HOH A 47 347 353 HOH HOH . 
K 4 HOH A 48 348 342 HOH HOH . 
K 4 HOH A 49 349 347 HOH HOH . 
K 4 HOH A 50 350 354 HOH HOH . 
K 4 HOH A 51 351 340 HOH HOH . 
K 4 HOH A 52 352 341 HOH HOH . 
K 4 HOH A 53 353 352 HOH HOH . 
K 4 HOH A 54 354 355 HOH HOH . 
K 4 HOH A 55 355 367 HOH HOH . 
K 4 HOH A 56 356 350 HOH HOH . 
K 4 HOH A 57 357 356 HOH HOH . 
K 4 HOH A 58 358 358 HOH HOH . 
K 4 HOH A 59 359 363 HOH HOH . 
K 4 HOH A 60 360 360 HOH HOH . 
K 4 HOH A 61 361 359 HOH HOH . 
K 4 HOH A 62 362 357 HOH HOH . 
K 4 HOH A 63 363 365 HOH HOH . 
K 4 HOH A 64 364 362 HOH HOH . 
K 4 HOH A 65 365 374 HOH HOH . 
K 4 HOH A 66 366 366 HOH HOH . 
K 4 HOH A 67 367 364 HOH HOH . 
K 4 HOH A 68 368 370 HOH HOH . 
K 4 HOH A 69 369 372 HOH HOH . 
K 4 HOH A 70 370 361 HOH HOH . 
K 4 HOH A 71 371 368 HOH HOH . 
K 4 HOH A 72 372 369 HOH HOH . 
K 4 HOH A 73 373 379 HOH HOH . 
K 4 HOH A 74 374 377 HOH HOH . 
K 4 HOH A 75 375 373 HOH HOH . 
K 4 HOH A 76 376 378 HOH HOH . 
K 4 HOH A 77 377 371 HOH HOH . 
K 4 HOH A 78 378 376 HOH HOH . 
K 4 HOH A 79 379 381 HOH HOH . 
K 4 HOH A 80 380 382 HOH HOH . 
K 4 HOH A 81 381 375 HOH HOH . 
K 4 HOH A 82 382 380 HOH HOH . 
K 4 HOH A 83 383 383 HOH HOH . 
K 4 HOH A 84 384 385 HOH HOH . 
K 4 HOH A 85 385 384 HOH HOH . 
K 4 HOH A 86 386 387 HOH HOH . 
K 4 HOH A 87 387 388 HOH HOH . 
K 4 HOH A 88 388 386 HOH HOH . 
K 4 HOH A 89 389 390 HOH HOH . 
K 4 HOH A 90 390 389 HOH HOH . 
K 4 HOH A 91 391 392 HOH HOH . 
K 4 HOH A 92 392 393 HOH HOH . 
K 4 HOH A 93 393 395 HOH HOH . 
K 4 HOH A 94 394 391 HOH HOH . 
K 4 HOH A 95 395 394 HOH HOH . 
K 4 HOH A 96 396 397 HOH HOH . 
K 4 HOH A 97 397 396 HOH HOH . 
K 4 HOH A 98 398 400 HOH HOH . 
K 4 HOH A 99 399 401 HOH HOH . 
K 4 HOH A 100 400 398 HOH HOH . 
K 4 HOH A 101 401 399 HOH HOH . 
K 4 HOH A 102 402 402 HOH HOH . 
K 4 HOH A 103 403 405 HOH HOH . 
K 4 HOH A 104 404 404 HOH HOH . 
K 4 HOH A 105 405 403 HOH HOH . 
K 4 HOH A 106 406 406 HOH HOH . 
K 4 HOH A 107 407 407 HOH HOH . 
K 4 HOH A 108 408 410 HOH HOH . 
K 4 HOH A 109 409 408 HOH HOH . 
K 4 HOH A 110 410 411 HOH HOH . 
K 4 HOH A 111 411 409 HOH HOH . 
K 4 HOH A 112 412 412 HOH HOH . 
K 4 HOH A 113 413 413 HOH HOH . 
K 4 HOH A 114 414 414 HOH HOH . 
K 4 HOH A 115 415 415 HOH HOH . 
K 4 HOH A 116 416 417 HOH HOH . 
K 4 HOH A 117 417 416 HOH HOH . 
K 4 HOH A 118 418 418 HOH HOH . 
K 4 HOH A 119 419 419 HOH HOH . 
K 4 HOH A 120 420 420 HOH HOH . 
K 4 HOH A 121 421 421 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . B . J 3 -16.072 -7.51 -24.243 0.66 28.8 ? C1 MRD 209 A 1 
HETATM 2 C C2 MRD . B . J 3 -14.821 -7.228 -25.048 0.66 29.05 ? C2 MRD 209 A 1 
HETATM 3 O O2 MRD . B . J 3 -13.711 -7.457 -24.214 0.66 35 ? O2 MRD 209 A 1 
HETATM 4 C CM MRD . B . J 3 -14.742 -8.201 -26.206 0.66 33.76 ? CM MRD 209 A 1 
HETATM 5 C C3 MRD . B . J 3 -14.789 -5.768 -25.484 0.66 9.85 ? C3 MRD 209 A 1 
HETATM 6 C C4 MRD . B . J 3 -15.572 -5.457 -26.751 0.66 33.74 ? C4 MRD 209 A 1 
HETATM 7 O O4 MRD . B . J 3 -16.73 -6.255 -26.84 0.66 19.95 ? O4 MRD 209 A 1 
HETATM 8 C C5 MRD . B . J 3 -14.715 -5.656 -27.987 0.66 25.84 ? C5 MRD 209 A 1 
HETATM 9 H H1C1 MRD . B . J 3 -16.12 -8.463 -24.04 0.66 34.56 ? H1C1 MRD 209 A 1 
HETATM 10 H H1C2 MRD . B . J 3 -16.857 -7.248 -24.76 0.66 34.56 ? H1C2 MRD 209 A 1 
HETATM 11 H H1C3 MRD . B . J 3 -16.046 -7.001 -23.411 0.66 34.56 ? H1C3 MRD 209 A 1 
HETATM 12 H H2 MRD . B . J 3 -13.462 -8.307 -24.278 0.66 42 ? H2 MRD 209 A 1 
HETATM 13 H HMC1 MRD . B . J 3 -14.759 -9.115 -25.864 0.66 40.52 ? HMC1 MRD 209 A 1 
HETATM 14 H HMC2 MRD . B . J 3 -13.913 -8.054 -26.699 0.66 40.52 ? HMC2 MRD 209 A 1 
HETATM 15 H HMC3 MRD . B . J 3 -15.503 -8.062 -26.801 0.66 40.52 ? HMC3 MRD 209 A 1 
HETATM 16 H H3C1 MRD . B . J 3 -13.858 -5.512 -25.628 0.66 11.82 ? H3C1 MRD 209 A 1 
HETATM 17 H H3C2 MRD . B . J 3 -15.149 -5.224 -24.758 0.66 11.82 ? H3C2 MRD 209 A 1 
HETATM 18 H H4 MRD . B . J 3 -15.848 -4.521 -26.718 0.66 40.49 ? H4 MRD 209 A 1 
HETATM 19 H HA MRD . B . J 3 -17.349 -5.942 -26.286 0.66 23.94 ? HA MRD 209 A 1 
HETATM 20 H H5C1 MRD . B . J 3 -15.121 -6.335 -28.558 0.66 31.01 ? H5C1 MRD 209 A 1 
HETATM 21 H H5C2 MRD . B . J 3 -13.823 -5.947 -27.72 0.66 31.01 ? H5C2 MRD 209 A 1 
HETATM 22 H H5C3 MRD . B . J 3 -14.651 -4.814 -28.477 0.66 31.01 ? H5C3 MRD 209 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#