data_6D6R # _model_server_result.job_id gABuIs9FMXl3mW6-biCxVg _model_server_result.datetime_utc '2024-10-11 10:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":2001}' # _entry.id 6D6R # _exptl.entry_id 6D6R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D6R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K SG CYS 33 K CYS 31 1_555 P ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 K SG CYS 38 K CYS 36 1_555 P ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 K SG CYS 41 K CYS 39 1_555 P ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 K NE2 HIS 161 K HIS 159 1_555 P ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc5 K O VAL 480 K VAL 478 1_555 Q MG MG . K MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? hydrog WATSON-CRICK hydrog1 N N1 A 1 N A 1 1_555 O N3 DT 16 O DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 N N6 A 1 N A 1 1_555 O O4 DT 16 O DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 N N1 G 2 N G 2 1_555 O N3 DC 15 O DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 N N2 G 2 N G 2 1_555 O O2 DC 15 O DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 N O6 G 2 N G 2 1_555 O N4 DC 15 O DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 N N3 C 3 N C 3 1_555 O N1 DG 14 O DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 N N4 C 3 N C 3 1_555 O O6 DG 14 O DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 N O2 C 3 N C 3 1_555 O N2 DG 14 O DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 N N1 A 4 N A 4 1_555 O N3 DT 13 O DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 N N6 A 4 N A 4 1_555 O O4 DT 13 O DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 N N3 C 5 N C 5 1_555 O N1 DG 12 O DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 N N4 C 5 N C 5 1_555 O O6 DG 12 O DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 N O2 C 5 N C 5 1_555 O N2 DG 12 O DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog14 N N3 C 5 N C 5 1_555 O N3 DT 13 O DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog15 N N4 C 5 N C 5 1_555 O O4 DT 13 O DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 N N3 C 6 N C 6 1_555 O N1 DG 11 O DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 N N4 C 6 N C 6 1_555 O O6 DG 11 O DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 N O2 C 6 N C 6 1_555 O N2 DG 11 O DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 N N1 G 7 N G 7 1_555 O N3 DC 10 O DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 N N2 G 7 N G 7 1_555 O O2 DC 10 O DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 N O6 G 7 N G 7 1_555 O N4 DC 10 O DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 N N3 U 8 N U 8 1_555 O N1 DA 9 O DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 N O4 U 8 N U 8 1_555 O N6 DA 9 O DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 N N1 A 9 N A 9 1_555 O N3 DT 8 O DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 N N6 A 9 N A 9 1_555 O O4 DT 8 O DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 N N1 A 10 N A 10 1_555 O N3 DT 7 O DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 N N6 A 10 N A 10 1_555 O O4 DT 7 O DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 N N1 A 11 N A 11 1_555 O N3 DT 6 O DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 N N6 A 11 N A 11 1_555 O O4 DT 6 O DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 N N1 G 12 N G 12 1_555 O N3 DC 5 O DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 N N2 G 12 N G 12 1_555 O O2 DC 5 O DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 N O6 G 12 N G 12 1_555 O N4 DC 5 O DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 N N1 A 13 N A 13 1_555 O N3 DT 4 O DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 N N6 A 13 N A 13 1_555 O O4 DT 4 O DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 52 n n PG O2G ANP sing 53 n n PG O3G ANP sing 54 n n PG N3B ANP sing 55 n n O2G HOG2 ANP sing 56 n n O3G HOG3 ANP sing 57 n n PB O1B ANP doub 58 n n PB O2B ANP sing 59 n n PB N3B ANP sing 60 n n PB O3A ANP sing 61 n n O2B HOB2 ANP sing 62 n n N3B HNB1 ANP sing 63 n n PA O1A ANP doub 64 n n PA O2A ANP sing 65 n n PA O3A ANP sing 66 n n PA O5' ANP sing 67 n n O2A HOA2 ANP sing 68 n n O5' C5' ANP sing 69 n n C5' C4' ANP sing 70 n n C5' "H5'1" ANP sing 71 n n C5' "H5'2" ANP sing 72 n n C4' O4' ANP sing 73 n n C4' C3' ANP sing 74 n n C4' H4' ANP sing 75 n n O4' C1' ANP sing 76 n n C3' O3' ANP sing 77 n n C3' C2' ANP sing 78 n n C3' H3' ANP sing 79 n n O3' HO3' ANP sing 80 n n C2' O2' ANP sing 81 n n C2' C1' ANP sing 82 n n C2' H2' ANP sing 83 n n O2' HO2' ANP sing 84 n n C1' N9 ANP sing 85 n n C1' H1' ANP sing 86 n n N9 C8 ANP sing 87 n y N9 C4 ANP sing 88 n y C8 N7 ANP doub 89 n y C8 H8 ANP sing 90 n n N7 C5 ANP sing 91 n y C5 C6 ANP sing 92 n y C5 C4 ANP doub 93 n y C6 N6 ANP sing 94 n n C6 N1 ANP doub 95 n y N6 HN61 ANP sing 96 n n N6 HN62 ANP sing 97 n n N1 C2 ANP sing 98 n y C2 N3 ANP doub 99 n y C2 H2 ANP sing 100 n n N3 C4 ANP sing 101 n y # _atom_sites.entry_id 6D6R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 16 ZN K 1 1001 1001 ZN ZN . Q 17 MG K 1 2001 2001 MG MG . R 18 ANP M 1 2001 2001 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . R 18 188.23 146.574 245.608 1 86.64 ? PB ANP 2001 M 1 HETATM 2 O O1B ANP . . . R 18 188.706 147.647 244.685 1 86.64 ? O1B ANP 2001 M 1 HETATM 3 O O2B ANP . . . R 18 186.988 145.873 244.985 1 86.64 ? O2B ANP 2001 M 1 HETATM 4 N N3B ANP . . . R 18 187.812 147.257 247.08 1 86.64 ? N3B ANP 2001 M 1 HETATM 5 P PA ANP . . . R 18 190.687 145.909 246.587 1 86.64 ? PA ANP 2001 M 1 HETATM 6 O O1A ANP . . . R 18 191.379 147.039 245.925 1 86.64 ? O1A ANP 2001 M 1 HETATM 7 O O2A ANP . . . R 18 190.288 146.172 248.042 1 86.64 ? O2A ANP 2001 M 1 HETATM 8 O O3A ANP . . . R 18 189.359 145.519 245.81 1 86.64 ? O3A ANP 2001 M 1 HETATM 9 O O5' ANP . . . R 18 191.615 144.631 246.458 1 86.64 ? O5' ANP 2001 M 1 HETATM 10 C C5' ANP . . . R 18 192.932 144.711 245.872 1 86.64 ? C5' ANP 2001 M 1 HETATM 11 C C4' ANP . . . R 18 193.378 143.322 245.488 1 86.64 ? C4' ANP 2001 M 1 HETATM 12 O O4' ANP . . . R 18 192.251 142.432 245.493 1 86.64 ? O4' ANP 2001 M 1 HETATM 13 C C3' ANP . . . R 18 193.955 143.184 244.085 1 86.64 ? C3' ANP 2001 M 1 HETATM 14 O O3' ANP . . . R 18 195.34 143.51 244.058 1 86.64 ? O3' ANP 2001 M 1 HETATM 15 C C2' ANP . . . R 18 193.711 141.704 243.755 1 86.64 ? C2' ANP 2001 M 1 HETATM 16 O O2' ANP . . . R 18 194.857 140.903 244.022 1 86.64 ? O2' ANP 2001 M 1 HETATM 17 C C1' ANP . . . R 18 192.551 141.312 244.684 1 86.64 ? C1' ANP 2001 M 1 HETATM 18 N N9 ANP . . . R 18 191.339 140.918 243.978 1 86.64 ? N9 ANP 2001 M 1 HETATM 19 C C8 ANP . . . R 18 190.296 141.723 243.606 1 86.64 ? C8 ANP 2001 M 1 HETATM 20 N N7 ANP . . . R 18 189.33 141.095 242.977 1 86.64 ? N7 ANP 2001 M 1 HETATM 21 C C5 ANP . . . R 18 189.774 139.782 242.932 1 86.64 ? C5 ANP 2001 M 1 HETATM 22 C C6 ANP . . . R 18 189.205 138.609 242.395 1 86.64 ? C6 ANP 2001 M 1 HETATM 23 N N6 ANP . . . R 18 188.024 138.572 241.776 1 86.64 ? N6 ANP 2001 M 1 HETATM 24 N N1 ANP . . . R 18 189.908 137.46 242.515 1 86.64 ? N1 ANP 2001 M 1 HETATM 25 C C2 ANP . . . R 18 191.093 137.493 243.132 1 86.64 ? C2 ANP 2001 M 1 HETATM 26 N N3 ANP . . . R 18 191.726 138.536 243.677 1 86.64 ? N3 ANP 2001 M 1 HETATM 27 C C4 ANP . . . R 18 191.008 139.657 243.542 1 86.64 ? C4 ANP 2001 M 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #