data_6D7M # _model_server_result.job_id hT08qnUPB90PZhuJ4auTHw _model_server_result.datetime_utc '2024-10-18 16:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6D7M # _exptl.entry_id 6D7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D7M _cell.length_a 77.813 _cell.length_b 90.162 _cell.length_c 98.394 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6D7M _atom_sites.fract_transf_matrix[1][1] 0.012851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 601 1 EDO EDO . C 2 EDO B 1 602 3 EDO EDO . D 2 EDO B 1 603 4 EDO EDO . E 3 CL B 1 604 1 CL CL . F 4 SIN B 1 605 1300 SIN SIN . G 5 HOH B 1 701 88 HOH HOH . G 5 HOH B 2 702 34 HOH HOH . G 5 HOH B 3 703 147 HOH HOH . G 5 HOH B 4 704 65 HOH HOH . G 5 HOH B 5 705 23 HOH HOH . G 5 HOH B 6 706 91 HOH HOH . G 5 HOH B 7 707 127 HOH HOH . G 5 HOH B 8 708 94 HOH HOH . G 5 HOH B 9 709 25 HOH HOH . G 5 HOH B 10 710 57 HOH HOH . G 5 HOH B 11 711 55 HOH HOH . G 5 HOH B 12 712 4 HOH HOH . G 5 HOH B 13 713 71 HOH HOH . G 5 HOH B 14 714 58 HOH HOH . G 5 HOH B 15 715 131 HOH HOH . G 5 HOH B 16 716 146 HOH HOH . G 5 HOH B 17 717 40 HOH HOH . G 5 HOH B 18 718 35 HOH HOH . G 5 HOH B 19 719 50 HOH HOH . G 5 HOH B 20 720 158 HOH HOH . G 5 HOH B 21 721 98 HOH HOH . G 5 HOH B 22 722 21 HOH HOH . G 5 HOH B 23 723 78 HOH HOH . G 5 HOH B 24 724 100 HOH HOH . G 5 HOH B 25 725 13 HOH HOH . G 5 HOH B 26 726 24 HOH HOH . G 5 HOH B 27 727 74 HOH HOH . G 5 HOH B 28 728 155 HOH HOH . G 5 HOH B 29 729 162 HOH HOH . G 5 HOH B 30 730 38 HOH HOH . G 5 HOH B 31 731 109 HOH HOH . G 5 HOH B 32 732 81 HOH HOH . G 5 HOH B 33 733 163 HOH HOH . G 5 HOH B 34 734 154 HOH HOH . G 5 HOH B 35 735 28 HOH HOH . G 5 HOH B 36 736 134 HOH HOH . G 5 HOH B 37 737 2 HOH HOH . G 5 HOH B 38 738 36 HOH HOH . G 5 HOH B 39 739 26 HOH HOH . G 5 HOH B 40 740 49 HOH HOH . G 5 HOH B 41 741 27 HOH HOH . G 5 HOH B 42 742 76 HOH HOH . G 5 HOH B 43 743 125 HOH HOH . G 5 HOH B 44 744 52 HOH HOH . G 5 HOH B 45 745 67 HOH HOH . G 5 HOH B 46 746 22 HOH HOH . G 5 HOH B 47 747 75 HOH HOH . G 5 HOH B 48 748 9 HOH HOH . G 5 HOH B 49 749 10 HOH HOH . G 5 HOH B 50 750 56 HOH HOH . G 5 HOH B 51 751 118 HOH HOH . G 5 HOH B 52 752 54 HOH HOH . G 5 HOH B 53 753 33 HOH HOH . G 5 HOH B 54 754 61 HOH HOH . G 5 HOH B 55 755 41 HOH HOH . G 5 HOH B 56 756 165 HOH HOH . G 5 HOH B 57 757 164 HOH HOH . G 5 HOH B 58 758 1 HOH HOH . G 5 HOH B 59 759 104 HOH HOH . G 5 HOH B 60 760 107 HOH HOH . G 5 HOH B 61 761 15 HOH HOH . G 5 HOH B 62 762 89 HOH HOH . G 5 HOH B 63 763 43 HOH HOH . G 5 HOH B 64 764 30 HOH HOH . G 5 HOH B 65 765 69 HOH HOH . G 5 HOH B 66 766 170 HOH HOH . G 5 HOH B 67 767 111 HOH HOH . G 5 HOH B 68 768 117 HOH HOH . G 5 HOH B 69 769 31 HOH HOH . G 5 HOH B 70 770 64 HOH HOH . G 5 HOH B 71 771 20 HOH HOH . G 5 HOH B 72 772 97 HOH HOH . G 5 HOH B 73 773 3 HOH HOH . G 5 HOH B 74 774 93 HOH HOH . G 5 HOH B 75 775 126 HOH HOH . G 5 HOH B 76 776 63 HOH HOH . G 5 HOH B 77 777 105 HOH HOH . G 5 HOH B 78 778 19 HOH HOH . G 5 HOH B 79 779 120 HOH HOH . G 5 HOH B 80 780 101 HOH HOH . G 5 HOH B 81 781 90 HOH HOH . G 5 HOH B 82 782 46 HOH HOH . G 5 HOH B 83 783 113 HOH HOH . G 5 HOH B 84 784 8 HOH HOH . G 5 HOH B 85 785 17 HOH HOH . G 5 HOH B 86 786 48 HOH HOH . G 5 HOH B 87 787 5 HOH HOH . G 5 HOH B 88 788 159 HOH HOH . G 5 HOH B 89 789 122 HOH HOH . G 5 HOH B 90 790 168 HOH HOH . G 5 HOH B 91 791 96 HOH HOH . G 5 HOH B 92 792 14 HOH HOH . G 5 HOH B 93 793 29 HOH HOH . G 5 HOH B 94 794 51 HOH HOH . G 5 HOH B 95 795 121 HOH HOH . G 5 HOH B 96 796 53 HOH HOH . G 5 HOH B 97 797 79 HOH HOH . G 5 HOH B 98 798 139 HOH HOH . G 5 HOH B 99 799 123 HOH HOH . G 5 HOH B 100 800 60 HOH HOH . G 5 HOH B 101 801 133 HOH HOH . G 5 HOH B 102 802 42 HOH HOH . G 5 HOH B 103 803 16 HOH HOH . G 5 HOH B 104 804 92 HOH HOH . G 5 HOH B 105 805 103 HOH HOH . G 5 HOH B 106 806 47 HOH HOH . G 5 HOH B 107 807 6 HOH HOH . G 5 HOH B 108 808 144 HOH HOH . G 5 HOH B 109 809 72 HOH HOH . G 5 HOH B 110 810 108 HOH HOH . G 5 HOH B 111 811 32 HOH HOH . G 5 HOH B 112 812 128 HOH HOH . G 5 HOH B 113 813 110 HOH HOH . G 5 HOH B 114 814 85 HOH HOH . G 5 HOH B 115 815 82 HOH HOH . G 5 HOH B 116 816 44 HOH HOH . G 5 HOH B 117 817 161 HOH HOH . G 5 HOH B 118 818 59 HOH HOH . G 5 HOH B 119 819 66 HOH HOH . G 5 HOH B 120 820 129 HOH HOH . G 5 HOH B 121 821 39 HOH HOH . G 5 HOH B 122 822 12 HOH HOH . G 5 HOH B 123 823 130 HOH HOH . G 5 HOH B 124 824 153 HOH HOH . G 5 HOH B 125 825 45 HOH HOH . G 5 HOH B 126 826 102 HOH HOH . G 5 HOH B 127 827 145 HOH HOH . G 5 HOH B 128 828 80 HOH HOH . G 5 HOH B 129 829 124 HOH HOH . G 5 HOH B 130 830 99 HOH HOH . G 5 HOH B 131 831 115 HOH HOH . G 5 HOH B 132 832 149 HOH HOH . G 5 HOH B 133 833 70 HOH HOH . G 5 HOH B 134 834 138 HOH HOH . G 5 HOH B 135 835 137 HOH HOH . G 5 HOH B 136 836 150 HOH HOH . G 5 HOH B 137 837 157 HOH HOH . G 5 HOH B 138 838 142 HOH HOH . G 5 HOH B 139 839 11 HOH HOH . G 5 HOH B 140 840 112 HOH HOH . G 5 HOH B 141 841 136 HOH HOH . G 5 HOH B 142 842 18 HOH HOH . G 5 HOH B 143 843 143 HOH HOH . G 5 HOH B 144 844 156 HOH HOH . G 5 HOH B 145 845 132 HOH HOH . G 5 HOH B 146 846 119 HOH HOH . G 5 HOH B 147 847 135 HOH HOH . G 5 HOH B 148 848 106 HOH HOH . G 5 HOH B 149 849 86 HOH HOH . G 5 HOH B 150 850 95 HOH HOH . G 5 HOH B 151 851 151 HOH HOH . G 5 HOH B 152 852 152 HOH HOH . G 5 HOH B 153 853 62 HOH HOH . G 5 HOH B 154 854 116 HOH HOH . G 5 HOH B 155 855 167 HOH HOH . G 5 HOH B 156 856 114 HOH HOH . G 5 HOH B 157 857 169 HOH HOH . G 5 HOH B 158 858 141 HOH HOH . G 5 HOH B 159 859 160 HOH HOH . G 5 HOH B 160 860 166 HOH HOH . G 5 HOH B 161 861 140 HOH HOH . G 5 HOH B 162 862 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -2.172 -38.759 4.878 0.95 58.04 ? C1 EDO 603 B 1 HETATM 2 O O1 EDO . . . D 2 -0.951 -38.678 4.122 0.95 56.65 ? O1 EDO 603 B 1 HETATM 3 C C2 EDO . . . D 2 -2.227 -37.654 5.939 0.95 51.57 ? C2 EDO 603 B 1 HETATM 4 H H11 EDO . . . D 2 -2.237 -39.735 5.364 0.95 69.64 ? H11 EDO 603 B 1 HETATM 5 H H12 EDO . . . D 2 -3.026 -38.661 4.204 0.95 69.64 ? H12 EDO 603 B 1 HETATM 6 H HO1 EDO . . . D 2 -0.935 -39.382 3.459 0.95 67.98 ? HO1 EDO 603 B 1 HETATM 7 H H21 EDO . . . D 2 -1.214 -37.415 6.268 0.95 61.88 ? H21 EDO 603 B 1 HETATM 8 H H22 EDO . . . D 2 -2.787 -38.01 6.807 0.95 61.88 ? H22 EDO 603 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #