data_6D7M
#
_model_server_result.job_id            5YdRWc6sWiqW5ad19R2tiA 
_model_server_result.datetime_utc      '2025-08-29 09:54:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":605}' 
#
_entry.id    6D7M 
#
_exptl.entry_id    6D7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D7M 
_cell.length_a            77.813 
_cell.length_b            90.162 
_cell.length_c            98.394 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 299 n n 
C1 O2 SIN sing 300 n n 
C1 C2 SIN sing 301 n n 
O2 HO2 SIN sing 302 n n 
C2 C3 SIN sing 303 n n 
C2 H21 SIN sing 304 n n 
C2 H22 SIN sing 305 n n 
C3 C4 SIN sing 306 n n 
C3 H31 SIN sing 307 n n 
C3 H32 SIN sing 308 n n 
C4 O3 SIN doub 309 n n 
C4 O4 SIN sing 310 n n 
O4 HO4 SIN sing 311 n n 
#
_atom_sites.entry_id                     6D7M 
_atom_sites.fract_transf_matrix[1][1]    0.012851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010163 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO B 1 601 1 EDO EDO . 
C 2 EDO B 1 602 3 EDO EDO . 
D 2 EDO B 1 603 4 EDO EDO . 
E 3 CL B 1 604 1 CL CL . 
F 4 SIN B 1 605 1300 SIN SIN . 
G 5 HOH B 1 701 88 HOH HOH . 
G 5 HOH B 2 702 34 HOH HOH . 
G 5 HOH B 3 703 147 HOH HOH . 
G 5 HOH B 4 704 65 HOH HOH . 
G 5 HOH B 5 705 23 HOH HOH . 
G 5 HOH B 6 706 91 HOH HOH . 
G 5 HOH B 7 707 127 HOH HOH . 
G 5 HOH B 8 708 94 HOH HOH . 
G 5 HOH B 9 709 25 HOH HOH . 
G 5 HOH B 10 710 57 HOH HOH . 
G 5 HOH B 11 711 55 HOH HOH . 
G 5 HOH B 12 712 4 HOH HOH . 
G 5 HOH B 13 713 71 HOH HOH . 
G 5 HOH B 14 714 58 HOH HOH . 
G 5 HOH B 15 715 131 HOH HOH . 
G 5 HOH B 16 716 146 HOH HOH . 
G 5 HOH B 17 717 40 HOH HOH . 
G 5 HOH B 18 718 35 HOH HOH . 
G 5 HOH B 19 719 50 HOH HOH . 
G 5 HOH B 20 720 158 HOH HOH . 
G 5 HOH B 21 721 98 HOH HOH . 
G 5 HOH B 22 722 21 HOH HOH . 
G 5 HOH B 23 723 78 HOH HOH . 
G 5 HOH B 24 724 100 HOH HOH . 
G 5 HOH B 25 725 13 HOH HOH . 
G 5 HOH B 26 726 24 HOH HOH . 
G 5 HOH B 27 727 74 HOH HOH . 
G 5 HOH B 28 728 155 HOH HOH . 
G 5 HOH B 29 729 162 HOH HOH . 
G 5 HOH B 30 730 38 HOH HOH . 
G 5 HOH B 31 731 109 HOH HOH . 
G 5 HOH B 32 732 81 HOH HOH . 
G 5 HOH B 33 733 163 HOH HOH . 
G 5 HOH B 34 734 154 HOH HOH . 
G 5 HOH B 35 735 28 HOH HOH . 
G 5 HOH B 36 736 134 HOH HOH . 
G 5 HOH B 37 737 2 HOH HOH . 
G 5 HOH B 38 738 36 HOH HOH . 
G 5 HOH B 39 739 26 HOH HOH . 
G 5 HOH B 40 740 49 HOH HOH . 
G 5 HOH B 41 741 27 HOH HOH . 
G 5 HOH B 42 742 76 HOH HOH . 
G 5 HOH B 43 743 125 HOH HOH . 
G 5 HOH B 44 744 52 HOH HOH . 
G 5 HOH B 45 745 67 HOH HOH . 
G 5 HOH B 46 746 22 HOH HOH . 
G 5 HOH B 47 747 75 HOH HOH . 
G 5 HOH B 48 748 9 HOH HOH . 
G 5 HOH B 49 749 10 HOH HOH . 
G 5 HOH B 50 750 56 HOH HOH . 
G 5 HOH B 51 751 118 HOH HOH . 
G 5 HOH B 52 752 54 HOH HOH . 
G 5 HOH B 53 753 33 HOH HOH . 
G 5 HOH B 54 754 61 HOH HOH . 
G 5 HOH B 55 755 41 HOH HOH . 
G 5 HOH B 56 756 165 HOH HOH . 
G 5 HOH B 57 757 164 HOH HOH . 
G 5 HOH B 58 758 1 HOH HOH . 
G 5 HOH B 59 759 104 HOH HOH . 
G 5 HOH B 60 760 107 HOH HOH . 
G 5 HOH B 61 761 15 HOH HOH . 
G 5 HOH B 62 762 89 HOH HOH . 
G 5 HOH B 63 763 43 HOH HOH . 
G 5 HOH B 64 764 30 HOH HOH . 
G 5 HOH B 65 765 69 HOH HOH . 
G 5 HOH B 66 766 170 HOH HOH . 
G 5 HOH B 67 767 111 HOH HOH . 
G 5 HOH B 68 768 117 HOH HOH . 
G 5 HOH B 69 769 31 HOH HOH . 
G 5 HOH B 70 770 64 HOH HOH . 
G 5 HOH B 71 771 20 HOH HOH . 
G 5 HOH B 72 772 97 HOH HOH . 
G 5 HOH B 73 773 3 HOH HOH . 
G 5 HOH B 74 774 93 HOH HOH . 
G 5 HOH B 75 775 126 HOH HOH . 
G 5 HOH B 76 776 63 HOH HOH . 
G 5 HOH B 77 777 105 HOH HOH . 
G 5 HOH B 78 778 19 HOH HOH . 
G 5 HOH B 79 779 120 HOH HOH . 
G 5 HOH B 80 780 101 HOH HOH . 
G 5 HOH B 81 781 90 HOH HOH . 
G 5 HOH B 82 782 46 HOH HOH . 
G 5 HOH B 83 783 113 HOH HOH . 
G 5 HOH B 84 784 8 HOH HOH . 
G 5 HOH B 85 785 17 HOH HOH . 
G 5 HOH B 86 786 48 HOH HOH . 
G 5 HOH B 87 787 5 HOH HOH . 
G 5 HOH B 88 788 159 HOH HOH . 
G 5 HOH B 89 789 122 HOH HOH . 
G 5 HOH B 90 790 168 HOH HOH . 
G 5 HOH B 91 791 96 HOH HOH . 
G 5 HOH B 92 792 14 HOH HOH . 
G 5 HOH B 93 793 29 HOH HOH . 
G 5 HOH B 94 794 51 HOH HOH . 
G 5 HOH B 95 795 121 HOH HOH . 
G 5 HOH B 96 796 53 HOH HOH . 
G 5 HOH B 97 797 79 HOH HOH . 
G 5 HOH B 98 798 139 HOH HOH . 
G 5 HOH B 99 799 123 HOH HOH . 
G 5 HOH B 100 800 60 HOH HOH . 
G 5 HOH B 101 801 133 HOH HOH . 
G 5 HOH B 102 802 42 HOH HOH . 
G 5 HOH B 103 803 16 HOH HOH . 
G 5 HOH B 104 804 92 HOH HOH . 
G 5 HOH B 105 805 103 HOH HOH . 
G 5 HOH B 106 806 47 HOH HOH . 
G 5 HOH B 107 807 6 HOH HOH . 
G 5 HOH B 108 808 144 HOH HOH . 
G 5 HOH B 109 809 72 HOH HOH . 
G 5 HOH B 110 810 108 HOH HOH . 
G 5 HOH B 111 811 32 HOH HOH . 
G 5 HOH B 112 812 128 HOH HOH . 
G 5 HOH B 113 813 110 HOH HOH . 
G 5 HOH B 114 814 85 HOH HOH . 
G 5 HOH B 115 815 82 HOH HOH . 
G 5 HOH B 116 816 44 HOH HOH . 
G 5 HOH B 117 817 161 HOH HOH . 
G 5 HOH B 118 818 59 HOH HOH . 
G 5 HOH B 119 819 66 HOH HOH . 
G 5 HOH B 120 820 129 HOH HOH . 
G 5 HOH B 121 821 39 HOH HOH . 
G 5 HOH B 122 822 12 HOH HOH . 
G 5 HOH B 123 823 130 HOH HOH . 
G 5 HOH B 124 824 153 HOH HOH . 
G 5 HOH B 125 825 45 HOH HOH . 
G 5 HOH B 126 826 102 HOH HOH . 
G 5 HOH B 127 827 145 HOH HOH . 
G 5 HOH B 128 828 80 HOH HOH . 
G 5 HOH B 129 829 124 HOH HOH . 
G 5 HOH B 130 830 99 HOH HOH . 
G 5 HOH B 131 831 115 HOH HOH . 
G 5 HOH B 132 832 149 HOH HOH . 
G 5 HOH B 133 833 70 HOH HOH . 
G 5 HOH B 134 834 138 HOH HOH . 
G 5 HOH B 135 835 137 HOH HOH . 
G 5 HOH B 136 836 150 HOH HOH . 
G 5 HOH B 137 837 157 HOH HOH . 
G 5 HOH B 138 838 142 HOH HOH . 
G 5 HOH B 139 839 11 HOH HOH . 
G 5 HOH B 140 840 112 HOH HOH . 
G 5 HOH B 141 841 136 HOH HOH . 
G 5 HOH B 142 842 18 HOH HOH . 
G 5 HOH B 143 843 143 HOH HOH . 
G 5 HOH B 144 844 156 HOH HOH . 
G 5 HOH B 145 845 132 HOH HOH . 
G 5 HOH B 146 846 119 HOH HOH . 
G 5 HOH B 147 847 135 HOH HOH . 
G 5 HOH B 148 848 106 HOH HOH . 
G 5 HOH B 149 849 86 HOH HOH . 
G 5 HOH B 150 850 95 HOH HOH . 
G 5 HOH B 151 851 151 HOH HOH . 
G 5 HOH B 152 852 152 HOH HOH . 
G 5 HOH B 153 853 62 HOH HOH . 
G 5 HOH B 154 854 116 HOH HOH . 
G 5 HOH B 155 855 167 HOH HOH . 
G 5 HOH B 156 856 114 HOH HOH . 
G 5 HOH B 157 857 169 HOH HOH . 
G 5 HOH B 158 858 141 HOH HOH . 
G 5 HOH B 159 859 160 HOH HOH . 
G 5 HOH B 160 860 166 HOH HOH . 
G 5 HOH B 161 861 140 HOH HOH . 
G 5 HOH B 162 862 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . F 4 -1.142 14.593 -5.377 0.86 60.17 ? C1 SIN 605 B 1 
HETATM 2 O O1 SIN . . . F 4 -0.157 14.914 -6.087 0.86 61.71 ? O1 SIN 605 B 1 
HETATM 3 O O2 SIN . . . F 4 -0.962 13.999 -4.287 0.86 61.77 ? O2 SIN 605 B 1 
HETATM 4 C C2 SIN . . . F 4 -2.55 14.908 -5.825 0.86 56.92 ? C2 SIN 605 B 1 
HETATM 5 C C3 SIN . . . F 4 -2.726 16.393 -6.134 0.86 56.51 ? C3 SIN 605 B 1 
HETATM 6 C C4 SIN . . . F 4 -4.208 16.711 -6.158 0.86 58.56 ? C4 SIN 605 B 1 
HETATM 7 O O3 SIN . . . F 4 -4.647 17.632 -6.888 0.86 56.56 ? O3 SIN 605 B 1 
HETATM 8 O O4 SIN . . . F 4 -5.011 16.04 -5.455 0.86 61.37 ? O4 SIN 605 B 1 
HETATM 9 H H21 SIN . . . F 4 -2.784 14.324 -6.715 0.86 68.3 ? H21 SIN 605 B 1 
HETATM 10 H H22 SIN . . . F 4 -3.251 14.617 -5.043 0.86 68.3 ? H22 SIN 605 B 1 
HETATM 11 H H31 SIN . . . F 4 -2.229 16.993 -5.372 0.86 67.81 ? H31 SIN 605 B 1 
HETATM 12 H H32 SIN . . . F 4 -2.28 16.627 -7.1 0.86 67.81 ? H32 SIN 605 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#