data_6D7T # _model_server_result.job_id Bg1-ysRYJIMfnAN5TOG2Ng _model_server_result.datetime_utc '2025-07-02 07:07:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6D7T # _exptl.entry_id 6D7T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 225.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-aminoethyl diphenylborinate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D7T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 G CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 G CA CA . A CA 803 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc3 G CA CA . A CA 803 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 G CA CA . A CA 803 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C14 H16 B N O' _chem_comp.formula_weight 225.094 _chem_comp.id FZ4 _chem_comp.mon_nstd_flag . _chem_comp.name '2-aminoethyl diphenylborinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 FZ4 sing 83 n n C15 O14 FZ4 sing 84 n n C16 N17 FZ4 sing 85 n n C06 C07 FZ4 doub 86 n y C06 C05 FZ4 sing 87 n y O14 B01 FZ4 sing 88 n n C07 C02 FZ4 sing 89 n y C05 C04 FZ4 doub 90 n y C02 B01 FZ4 sing 91 n n C02 C03 FZ4 doub 92 n y C04 C03 FZ4 sing 93 n y B01 C08 FZ4 sing 94 n n C08 C13 FZ4 doub 95 n y C08 C09 FZ4 sing 96 n y C13 C12 FZ4 sing 97 n y C09 C10 FZ4 doub 98 n y C12 C11 FZ4 doub 99 n y C10 C11 FZ4 sing 100 n y C03 H1 FZ4 sing 101 n n C04 H2 FZ4 sing 102 n n C05 H3 FZ4 sing 103 n n C06 H4 FZ4 sing 104 n n C07 H5 FZ4 sing 105 n n C09 H6 FZ4 sing 106 n n C10 H7 FZ4 sing 107 n n C11 H8 FZ4 sing 108 n n C12 H9 FZ4 sing 109 n n C13 H10 FZ4 sing 110 n n C15 H11 FZ4 sing 111 n n C15 H12 FZ4 sing 112 n n C16 H13 FZ4 sing 113 n n C16 H14 FZ4 sing 114 n n N17 H15 FZ4 sing 115 n n N17 H16 FZ4 sing 116 n n # _atom_sites.entry_id 6D7T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FZ4 A 1 801 700 FZ4 APB . F 3 CA A 1 802 3 CA CA . G 3 CA A 1 803 6 CA CA . H 2 FZ4 B 1 801 700 FZ4 APB . I 2 FZ4 C 1 801 700 FZ4 APB . J 2 FZ4 D 1 801 700 FZ4 APB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B01 FZ4 . . . E 2 120.694 91.303 118.278 1 151.96 ? B01 FZ4 801 A 1 HETATM 2 C C02 FZ4 . . . E 2 121.958 92.224 118.364 1 151.96 ? C02 FZ4 801 A 1 HETATM 3 C C03 FZ4 . . . E 2 122.995 91.869 119.2 1 151.96 ? C03 FZ4 801 A 1 HETATM 4 C C04 FZ4 . . . E 2 124.115 92.667 119.279 1 151.96 ? C04 FZ4 801 A 1 HETATM 5 C C05 FZ4 . . . E 2 124.194 93.816 118.518 1 151.96 ? C05 FZ4 801 A 1 HETATM 6 C C06 FZ4 . . . E 2 123.157 94.167 117.676 1 151.96 ? C06 FZ4 801 A 1 HETATM 7 C C07 FZ4 . . . E 2 122.039 93.368 117.597 1 151.96 ? C07 FZ4 801 A 1 HETATM 8 C C08 FZ4 . . . E 2 119.732 91.17 119.513 1 151.96 ? C08 FZ4 801 A 1 HETATM 9 C C09 FZ4 . . . E 2 119.169 92.301 120.072 1 151.96 ? C09 FZ4 801 A 1 HETATM 10 C C10 FZ4 . . . E 2 118.313 92.178 121.148 1 151.96 ? C10 FZ4 801 A 1 HETATM 11 C C11 FZ4 . . . E 2 118.014 90.927 121.654 1 151.96 ? C11 FZ4 801 A 1 HETATM 12 C C12 FZ4 . . . E 2 118.568 89.798 121.081 1 151.96 ? C12 FZ4 801 A 1 HETATM 13 C C13 FZ4 . . . E 2 119.428 89.918 120.009 1 151.96 ? C13 FZ4 801 A 1 HETATM 14 C C15 FZ4 . . . E 2 120.844 90.494 115.974 1 151.96 ? C15 FZ4 801 A 1 HETATM 15 C C16 FZ4 . . . E 2 121.577 89.279 115.382 1 151.96 ? C16 FZ4 801 A 1 HETATM 16 N N17 FZ4 . . . E 2 122.866 89.623 114.795 1 151.96 ? N17 FZ4 801 A 1 HETATM 17 O O14 FZ4 . . . E 2 120.702 90.316 117.364 1 151.96 ? O14 FZ4 801 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #