data_6D88
#
_model_server_result.job_id            -AOitkXebT7IVx6f479xrA 
_model_server_result.datetime_utc      '2025-07-05 10:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":502}' 
#
_entry.id    6D88 
#
_exptl.entry_id    6D88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D88 
_cell.length_a            105.536 
_cell.length_b            157.894 
_cell.length_c            182.025 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 K N N 
? 9 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc4 A O GLY 44 A GLY 44 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 G O2G GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc8 G O2B GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc9 I MG MG . A MG 503 1_555 U O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc10 I MG MG . A MG 503 1_555 U O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc11 B OE1 GLN 11 B GLN 11 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc12 B OD2 ASP 177 B ASP 177 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc13 J O2A GDP . B GDP 501 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc14 M MG MG . B MG 504 1_555 V O HOH . B HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc15 M MG MG . B MG 504 1_555 W O HOH . C HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc16 C OD1 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc17 C OD2 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc18 C O THR 41 C THR 41 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc19 C OG1 THR 41 C THR 41 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc20 C O GLY 44 C GLY 44 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc21 C OE1 GLU 55 C GLU 55 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc22 C OE2 GLU 55 C GLU 55 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc23 O O3G GTP . C GTP 501 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc24 O O2B GTP . C GTP 501 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc25 Q MG MG . C MG 503 1_555 W O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc26 Q MG MG . C MG 503 1_555 W O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 411 n n 
O1 C6 MES sing 412 n n 
C2 C3 MES sing 413 n n 
C2 H21 MES sing 414 n n 
C2 H22 MES sing 415 n n 
C3 N4 MES sing 416 n n 
C3 H31 MES sing 417 n n 
C3 H32 MES sing 418 n n 
N4 C5 MES sing 419 n n 
N4 C7 MES sing 420 n n 
N4 HN4 MES sing 421 n n 
C5 C6 MES sing 422 n n 
C5 H51 MES sing 423 n n 
C5 H52 MES sing 424 n n 
C6 H61 MES sing 425 n n 
C6 H62 MES sing 426 n n 
C7 C8 MES sing 427 n n 
C7 H71 MES sing 428 n n 
C7 H72 MES sing 429 n n 
C8 S MES sing 430 n n 
C8 H81 MES sing 431 n n 
C8 H82 MES sing 432 n n 
S O1S MES doub 433 n n 
S O2S MES doub 434 n n 
S O3S MES sing 435 n n 
#
_atom_sites.entry_id                     6D88 
_atom_sites.fract_transf_matrix[1][1]    0.009475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005494 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 CA A 1 502 1 CA CA . 
I 7 MG A 1 503 1 MG MG . 
J 8 GDP B 1 501 501 GDP GDP . 
K 9 MES B 1 502 1 MES MES . 
L 9 MES B 1 503 2 MES MES . 
M 7 MG B 1 504 2 MG MG . 
N 10 G9K B 1 505 1 G9K G9K . 
O 5 GTP C 1 501 501 GTP GTP . 
P 6 CA C 1 502 2 CA CA . 
Q 7 MG C 1 503 3 MG MG . 
R 8 GDP D 1 501 1 GDP GDP . 
S 10 G9K D 1 502 2 G9K G9K . 
T 11 ACP F 1 401 1 ACP ACP . 
U 12 HOH A 1 601 98 HOH HOH . 
U 12 HOH A 2 602 27 HOH HOH . 
U 12 HOH A 3 603 119 HOH HOH . 
U 12 HOH A 4 604 99 HOH HOH . 
U 12 HOH A 5 605 95 HOH HOH . 
U 12 HOH A 6 606 115 HOH HOH . 
U 12 HOH A 7 607 25 HOH HOH . 
U 12 HOH A 8 608 13 HOH HOH . 
U 12 HOH A 9 609 63 HOH HOH . 
U 12 HOH A 10 610 56 HOH HOH . 
U 12 HOH A 11 611 60 HOH HOH . 
U 12 HOH A 12 612 33 HOH HOH . 
U 12 HOH A 13 613 50 HOH HOH . 
U 12 HOH A 14 614 8 HOH HOH . 
U 12 HOH A 15 615 30 HOH HOH . 
U 12 HOH A 16 616 75 HOH HOH . 
U 12 HOH A 17 617 22 HOH HOH . 
V 12 HOH B 1 601 53 HOH HOH . 
V 12 HOH B 2 602 44 HOH HOH . 
V 12 HOH B 3 603 112 HOH HOH . 
V 12 HOH B 4 604 89 HOH HOH . 
V 12 HOH B 5 605 24 HOH HOH . 
V 12 HOH B 6 606 107 HOH HOH . 
V 12 HOH B 7 607 18 HOH HOH . 
V 12 HOH B 8 608 116 HOH HOH . 
V 12 HOH B 9 609 125 HOH HOH . 
V 12 HOH B 10 610 85 HOH HOH . 
V 12 HOH B 11 611 108 HOH HOH . 
V 12 HOH B 12 612 109 HOH HOH . 
V 12 HOH B 13 613 126 HOH HOH . 
V 12 HOH B 14 614 92 HOH HOH . 
V 12 HOH B 15 615 96 HOH HOH . 
V 12 HOH B 16 616 70 HOH HOH . 
V 12 HOH B 17 617 124 HOH HOH . 
V 12 HOH B 18 618 21 HOH HOH . 
V 12 HOH B 19 619 101 HOH HOH . 
W 12 HOH C 1 601 103 HOH HOH . 
W 12 HOH C 2 602 102 HOH HOH . 
W 12 HOH C 3 603 121 HOH HOH . 
W 12 HOH C 4 604 114 HOH HOH . 
W 12 HOH C 5 605 104 HOH HOH . 
W 12 HOH C 6 606 97 HOH HOH . 
W 12 HOH C 7 607 123 HOH HOH . 
W 12 HOH C 8 608 19 HOH HOH . 
W 12 HOH C 9 609 72 HOH HOH . 
W 12 HOH C 10 610 1 HOH HOH . 
W 12 HOH C 11 611 20 HOH HOH . 
W 12 HOH C 12 612 106 HOH HOH . 
W 12 HOH C 13 613 111 HOH HOH . 
W 12 HOH C 14 614 105 HOH HOH . 
W 12 HOH C 15 615 23 HOH HOH . 
W 12 HOH C 16 616 6 HOH HOH . 
W 12 HOH C 17 617 83 HOH HOH . 
W 12 HOH C 18 618 65 HOH HOH . 
W 12 HOH C 19 619 100 HOH HOH . 
W 12 HOH C 20 620 87 HOH HOH . 
W 12 HOH C 21 621 122 HOH HOH . 
W 12 HOH C 22 622 42 HOH HOH . 
W 12 HOH C 23 623 29 HOH HOH . 
W 12 HOH C 24 624 71 HOH HOH . 
W 12 HOH C 25 625 110 HOH HOH . 
W 12 HOH C 26 626 7 HOH HOH . 
W 12 HOH C 27 627 41 HOH HOH . 
W 12 HOH C 28 628 86 HOH HOH . 
W 12 HOH C 29 629 88 HOH HOH . 
X 12 HOH D 1 601 118 HOH HOH . 
X 12 HOH D 2 602 74 HOH HOH . 
X 12 HOH D 3 603 54 HOH HOH . 
X 12 HOH D 4 604 90 HOH HOH . 
X 12 HOH D 5 605 12 HOH HOH . 
X 12 HOH D 6 606 5 HOH HOH . 
X 12 HOH D 7 607 32 HOH HOH . 
X 12 HOH D 8 608 80 HOH HOH . 
X 12 HOH D 9 609 57 HOH HOH . 
X 12 HOH D 10 610 76 HOH HOH . 
X 12 HOH D 11 611 77 HOH HOH . 
X 12 HOH D 12 612 82 HOH HOH . 
X 12 HOH D 13 613 69 HOH HOH . 
X 12 HOH D 14 614 94 HOH HOH . 
Y 12 HOH E 1 201 40 HOH HOH . 
Y 12 HOH E 2 202 93 HOH HOH . 
Y 12 HOH E 3 203 17 HOH HOH . 
Y 12 HOH E 4 204 67 HOH HOH . 
Y 12 HOH E 5 205 78 HOH HOH . 
Z 12 HOH F 1 501 59 HOH HOH . 
Z 12 HOH F 2 502 117 HOH HOH . 
Z 12 HOH F 3 503 79 HOH HOH . 
Z 12 HOH F 4 504 11 HOH HOH . 
Z 12 HOH F 5 505 81 HOH HOH . 
Z 12 HOH F 6 506 46 HOH HOH . 
Z 12 HOH F 7 507 38 HOH HOH . 
Z 12 HOH F 8 508 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . K 9 30.68 -56.868 -33.622 0.76 24.25 ? O1 MES 502 B 1 
HETATM 2 C C2 MES . . . K 9 30.364 -57.973 -32.788 0.76 24.29 ? C2 MES 502 B 1 
HETATM 3 C C3 MES . . . K 9 31.039 -59.258 -33.233 0.76 38.9 ? C3 MES 502 B 1 
HETATM 4 N N4 MES . . . K 9 30.879 -59.407 -34.679 0.76 40.4 ? N4 MES 502 B 1 
HETATM 5 C C5 MES . . . K 9 31.22 -58.268 -35.517 0.76 35.39 ? C5 MES 502 B 1 
HETATM 6 C C6 MES . . . K 9 30.358 -57.127 -34.986 0.76 28.92 ? C6 MES 502 B 1 
HETATM 7 C C7 MES . . . K 9 31.147 -60.739 -35.213 0.76 43.88 ? C7 MES 502 B 1 
HETATM 8 C C8 MES . . . K 9 31.729 -60.555 -36.604 0.76 48.02 ? C8 MES 502 B 1 
HETATM 9 S S MES . . . K 9 32.278 -62.018 -37.186 0.76 55.42 ? S MES 502 B 1 
HETATM 10 O O1S MES . . . K 9 31.538 -62.401 -38.416 0.76 55.94 ? O1S MES 502 B 1 
HETATM 11 O O2S MES . . . K 9 33.71 -61.857 -37.527 0.76 58.35 ? O2S MES 502 B 1 
HETATM 12 O O3S MES . . . K 9 32.099 -63.093 -36.18 0.76 51.12 ? O3S MES 502 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           568 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           12 
#