data_6D8I # _model_server_result.job_id EpAG42IR1u93D_Wmw7YDlQ _model_server_result.datetime_utc '2024-11-22 04:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":106}' # _entry.id 6D8I # _exptl.entry_id 6D8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D8I _cell.length_a 51.646 _cell.length_b 51.646 _cell.length_c 75.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 16 A GLU 22 1_555 A N MSE 17 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 17 A MSE 23 1_555 A N ARG 18 A ARG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C PRO 41 A PRO 47 1_555 A N MSE 42 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C MSE 42 A MSE 48 1_555 A N VAL 43 A VAL 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C ALA 54 A ALA 60 1_555 A N MSE 55 A MSE 61 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C ALA 54 A ALA 60 1_555 A N MSE 55 A MSE 61 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 55 A MSE 61 1_555 A N ALA 56 A ALA 62 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 55 A MSE 61 1_555 A N ALA 56 A ALA 62 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O ALA 28 A ALA 34 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A OD1 ASP 37 A ASP 43 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc3 A OD2 ASP 37 A ASP 43 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 A OG SER 39 A SER 45 1_555 C CA CA . A CA 102 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 A OD1 ASP 61 A ASP 67 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B CA CA . A CA 101 1_555 G O1 EDO . A EDO 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 B CA CA . A CA 101 1_555 G O2 EDO . A EDO 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 B CA CA . A CA 101 1_555 I O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc9 B CA CA . A CA 101 1_555 I O HOH . A HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc10 B CA CA . A CA 101 1_555 I O HOH . A HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 B CA CA . A CA 101 1_555 I O HOH . A HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 C CA CA . A CA 102 1_555 I O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 C CA CA . A CA 102 1_555 I O HOH . A HOH 254 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 C CA CA . A CA 102 1_555 I O HOH . A HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc15 C CA CA . A CA 102 1_555 I O HOH . A HOH 289 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc16 D CA CA . A CA 103 1_555 F O1 EDO . A EDO 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 D CA CA . A CA 103 1_555 F O2 EDO . A EDO 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc18 D CA CA . A CA 103 1_555 I O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc19 D CA CA . A CA 103 1_555 I O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc20 D CA CA . A CA 103 1_555 I O HOH . A HOH 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc21 D CA CA . A CA 103 1_555 I O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6D8I _atom_sites.fract_transf_matrix[1][1] 0.019363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 2 CA A 1 102 2 CA CA . D 2 CA A 1 103 3 CA CA . E 3 PGE A 1 104 1 PGE PGE . F 4 EDO A 1 105 1 EDO EDO . G 4 EDO A 1 106 2 EDO EDO . H 4 EDO A 1 107 3 EDO EDO . I 5 HOH A 1 201 18 HOH HOH . I 5 HOH A 2 202 36 HOH HOH . I 5 HOH A 3 203 53 HOH HOH . I 5 HOH A 4 204 57 HOH HOH . I 5 HOH A 5 205 16 HOH HOH . I 5 HOH A 6 206 28 HOH HOH . I 5 HOH A 7 207 44 HOH HOH . I 5 HOH A 8 208 2 HOH HOH . I 5 HOH A 9 209 64 HOH HOH . I 5 HOH A 10 210 14 HOH HOH . I 5 HOH A 11 211 51 HOH HOH . I 5 HOH A 12 212 91 HOH HOH . I 5 HOH A 13 213 67 HOH HOH . I 5 HOH A 14 214 40 HOH HOH . I 5 HOH A 15 215 6 HOH HOH . I 5 HOH A 16 216 41 HOH HOH . I 5 HOH A 17 217 13 HOH HOH . I 5 HOH A 18 218 45 HOH HOH . I 5 HOH A 19 219 10 HOH HOH . I 5 HOH A 20 220 77 HOH HOH . I 5 HOH A 21 221 9 HOH HOH . I 5 HOH A 22 222 88 HOH HOH . I 5 HOH A 23 223 78 HOH HOH . I 5 HOH A 24 224 65 HOH HOH . I 5 HOH A 25 225 1 HOH HOH . I 5 HOH A 26 226 58 HOH HOH . I 5 HOH A 27 227 12 HOH HOH . I 5 HOH A 28 228 37 HOH HOH . I 5 HOH A 29 229 7 HOH HOH . I 5 HOH A 30 230 21 HOH HOH . I 5 HOH A 31 231 3 HOH HOH . I 5 HOH A 32 232 42 HOH HOH . I 5 HOH A 33 233 75 HOH HOH . I 5 HOH A 34 234 31 HOH HOH . I 5 HOH A 35 235 56 HOH HOH . I 5 HOH A 36 236 74 HOH HOH . I 5 HOH A 37 237 19 HOH HOH . I 5 HOH A 38 238 87 HOH HOH . I 5 HOH A 39 239 46 HOH HOH . I 5 HOH A 40 240 20 HOH HOH . I 5 HOH A 41 241 17 HOH HOH . I 5 HOH A 42 242 11 HOH HOH . I 5 HOH A 43 243 48 HOH HOH . I 5 HOH A 44 244 27 HOH HOH . I 5 HOH A 45 245 68 HOH HOH . I 5 HOH A 46 246 49 HOH HOH . I 5 HOH A 47 247 34 HOH HOH . I 5 HOH A 48 248 43 HOH HOH . I 5 HOH A 49 249 22 HOH HOH . I 5 HOH A 50 250 30 HOH HOH . I 5 HOH A 51 251 33 HOH HOH . I 5 HOH A 52 252 50 HOH HOH . I 5 HOH A 53 253 29 HOH HOH . I 5 HOH A 54 254 24 HOH HOH . I 5 HOH A 55 255 25 HOH HOH . I 5 HOH A 56 256 5 HOH HOH . I 5 HOH A 57 257 39 HOH HOH . I 5 HOH A 58 258 23 HOH HOH . I 5 HOH A 59 259 76 HOH HOH . I 5 HOH A 60 260 84 HOH HOH . I 5 HOH A 61 261 70 HOH HOH . I 5 HOH A 62 262 79 HOH HOH . I 5 HOH A 63 263 73 HOH HOH . I 5 HOH A 64 264 59 HOH HOH . I 5 HOH A 65 265 8 HOH HOH . I 5 HOH A 66 266 62 HOH HOH . I 5 HOH A 67 267 60 HOH HOH . I 5 HOH A 68 268 35 HOH HOH . I 5 HOH A 69 269 71 HOH HOH . I 5 HOH A 70 270 89 HOH HOH . I 5 HOH A 71 271 61 HOH HOH . I 5 HOH A 72 272 80 HOH HOH . I 5 HOH A 73 273 38 HOH HOH . I 5 HOH A 74 274 90 HOH HOH . I 5 HOH A 75 275 81 HOH HOH . I 5 HOH A 76 276 26 HOH HOH . I 5 HOH A 77 277 47 HOH HOH . I 5 HOH A 78 278 69 HOH HOH . I 5 HOH A 79 279 85 HOH HOH . I 5 HOH A 80 280 72 HOH HOH . I 5 HOH A 81 281 4 HOH HOH . I 5 HOH A 82 282 52 HOH HOH . I 5 HOH A 83 283 86 HOH HOH . I 5 HOH A 84 284 15 HOH HOH . I 5 HOH A 85 285 66 HOH HOH . I 5 HOH A 86 286 83 HOH HOH . I 5 HOH A 87 287 82 HOH HOH . I 5 HOH A 88 288 54 HOH HOH . I 5 HOH A 89 289 32 HOH HOH . I 5 HOH A 90 290 55 HOH HOH . I 5 HOH A 91 291 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 42.453 8.951 35.244 1 35.02 ? C1 EDO 106 A 1 HETATM 2 O O1 EDO . . . G 4 41.994 8.719 33.94 1 30.02 ? O1 EDO 106 A 1 HETATM 3 C C2 EDO . . . G 4 43.089 7.677 35.786 1 37.58 ? C2 EDO 106 A 1 HETATM 4 O O2 EDO . . . G 4 43.924 7.119 34.809 1 36.66 ? O2 EDO 106 A 1 HETATM 5 H H11 EDO . . . G 4 43.111 9.664 35.234 1 42.03 ? H11 EDO 106 A 1 HETATM 6 H H12 EDO . . . G 4 41.707 9.207 35.809 1 42.03 ? H12 EDO 106 A 1 HETATM 7 H HO1 EDO . . . G 4 42.638 8.81 33.393 1 36.02 ? HO1 EDO 106 A 1 HETATM 8 H H21 EDO . . . G 4 43.612 7.887 36.576 1 45.09 ? H21 EDO 106 A 1 HETATM 9 H H22 EDO . . . G 4 42.394 7.041 36.018 1 45.09 ? H22 EDO 106 A 1 HETATM 10 H HO2 EDO . . . G 4 43.479 6.569 34.337 1 43.99 ? HO2 EDO 106 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #