data_6D8V
#
_model_server_result.job_id            2W_eHwnln5Mqih1I4ttXGQ 
_model_server_result.datetime_utc      '2024-12-26 11:08:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d8v 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
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_entry.id    6D8V 
#
_exptl.entry_id    6D8V 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              144.192 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,1-DIMETHYL-PROLINIUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6D8V 
_cell.length_a            119.04 
_cell.length_b            119.04 
_cell.length_c            121.58 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6D8V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H14 N O2 1' 
_chem_comp.formula_weight    144.192 
_chem_comp.id                PBE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,1-DIMETHYL-PROLINIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PROLINE BETAINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD PBE sing 224 n n 
N CA PBE sing 225 n n 
N CE PBE sing 226 n n 
N CF PBE sing 227 n n 
CD CG PBE sing 228 n n 
CD HD1 PBE sing 229 n n 
CD HD2 PBE sing 230 n n 
CA CB PBE sing 231 n n 
CA C PBE sing 232 n n 
CA HA PBE sing 233 n n 
CB CG PBE sing 234 n n 
CB HB1 PBE sing 235 n n 
CB HB2 PBE sing 236 n n 
CG HG1 PBE sing 237 n n 
CG HG2 PBE sing 238 n n 
CE HE1 PBE sing 239 n n 
CE HE2 PBE sing 240 n n 
CE HE3 PBE sing 241 n n 
CF HF1 PBE sing 242 n n 
CF HF2 PBE sing 243 n n 
CF HF3 PBE sing 244 n n 
C O PBE doub 245 n n 
C OXT PBE sing 246 n n 
OXT HXT PBE sing 247 n n 
#
_atom_sites.entry_id                     6D8V 
_atom_sites.fract_transf_matrix[1][1]    0.008401 
_atom_sites.fract_transf_matrix[1][2]    0.00485 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0097 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRS A 1 401 2 TRS TRS . 
C 3 PBE A 1 402 1 PBE PBE . 
D 4 HOH A 1 501 1 HOH HOH . 
D 4 HOH A 2 502 2 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PBE . . . C 3 47.637 56.318 136.606 1 102.12 ? N PBE 402 A 1 
HETATM 2 C CD PBE . . . C 3 46.628 57.121 136.393 1 91.91 ? CD PBE 402 A 1 
HETATM 3 C CA PBE . . . C 3 48.806 57.181 136.161 1 106.11 ? CA PBE 402 A 1 
HETATM 4 C CB PBE . . . C 3 48.435 58.576 136.807 1 111.8 ? CB PBE 402 A 1 
HETATM 5 C CG PBE . . . C 3 47.173 58.612 136.8 1 95.38 ? CG PBE 402 A 1 
HETATM 6 C CE PBE . . . C 3 47.707 55.97 138.041 1 110.08 ? CE PBE 402 A 1 
HETATM 7 C CF PBE . . . C 3 47.524 55.109 135.767 1 91.79 ? CF PBE 402 A 1 
HETATM 8 C C PBE . . . C 3 50.124 56.742 136.559 1 93.14 ? C PBE 402 A 1 
HETATM 9 O O PBE . . . C 3 51.083 57.561 136.521 1 98.64 ? O PBE 402 A 1 
HETATM 10 O OXT PBE . . . C 3 50.337 55.553 136.915 1 97.76 ? OXT PBE 402 A 1 
HETATM 11 H HD1 PBE . . . C 3 46.375 57.1 135.457 1 110.4 ? HD1 PBE 402 A 1 
HETATM 12 H HD2 PBE . . . C 3 45.879 56.873 136.957 1 110.4 ? HD2 PBE 402 A 1 
HETATM 13 H HA PBE . . . C 3 48.78 57.266 135.195 1 127.43 ? HA PBE 402 A 1 
HETATM 14 H HB1 PBE . . . C 3 48.795 59.3 136.271 1 134.27 ? HB1 PBE 402 A 1 
HETATM 15 H HB2 PBE . . . C 3 48.768 58.624 137.717 1 134.27 ? HB2 PBE 402 A 1 
HETATM 16 H HG1 PBE . . . C 3 46.861 59.269 136.158 1 114.56 ? HG1 PBE 402 A 1 
HETATM 17 H HE1 PBE . . . C 3 47.75 56.783 138.569 1 132.2 ? HE1 PBE 402 A 1 
HETATM 18 H HE2 PBE . . . C 3 46.917 55.464 138.29 1 132.2 ? HE2 PBE 402 A 1 
HETATM 19 H HE3 PBE . . . C 3 48.499 55.434 138.207 1 132.2 ? HE3 PBE 402 A 1 
HETATM 20 H HF1 PBE . . . C 3 46.673 54.676 135.938 1 110.26 ? HF1 PBE 402 A 1 
HETATM 21 H HF2 PBE . . . C 3 47.579 55.358 134.832 1 110.26 ? HF2 PBE 402 A 1 
HETATM 22 H HF3 PBE . . . C 3 48.247 54.498 135.982 1 110.26 ? HF3 PBE 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#