data_6D8X # _model_server_result.job_id SHYHDi2bkCXIe8kfKgXKnw _model_server_result.datetime_utc '2024-11-25 09:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6D8X # _exptl.entry_id 6D8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D8X _cell.length_a 61.934 _cell.length_b 61.934 _cell.length_c 167.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 260 A THR 440 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc2 A OE1 GLN 264 A GLN 444 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc3 D NA NA . A NA 503 1_555 H O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc4 D NA NA . A NA 503 1_555 H O HOH . A HOH 763 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc5 E NA NA . A NA 504 1_555 H O HOH . A HOH 763 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc6 F NA NA . A NA 505 1_555 H O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6D8X _atom_sites.fract_transf_matrix[1][1] 0.016146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDK A 1 501 478 EDK 129 . C 3 FLC A 1 502 479 FLC FLC . D 4 NA A 1 503 480 NA NA . E 4 NA A 1 504 481 NA NA . F 4 NA A 1 505 482 NA NA . G 5 GOL A 1 506 483 GOL GOL . H 6 HOH A 1 601 559 HOH HOH . H 6 HOH A 2 602 661 HOH HOH . H 6 HOH A 3 603 657 HOH HOH . H 6 HOH A 4 604 566 HOH HOH . H 6 HOH A 5 605 668 HOH HOH . H 6 HOH A 6 606 620 HOH HOH . H 6 HOH A 7 607 500 HOH HOH . H 6 HOH A 8 608 643 HOH HOH . H 6 HOH A 9 609 591 HOH HOH . H 6 HOH A 10 610 535 HOH HOH . H 6 HOH A 11 611 645 HOH HOH . H 6 HOH A 12 612 610 HOH HOH . H 6 HOH A 13 613 623 HOH HOH . H 6 HOH A 14 614 658 HOH HOH . H 6 HOH A 15 615 520 HOH HOH . H 6 HOH A 16 616 570 HOH HOH . H 6 HOH A 17 617 542 HOH HOH . H 6 HOH A 18 618 663 HOH HOH . H 6 HOH A 19 619 602 HOH HOH . H 6 HOH A 20 620 527 HOH HOH . H 6 HOH A 21 621 568 HOH HOH . H 6 HOH A 22 622 519 HOH HOH . H 6 HOH A 23 623 522 HOH HOH . H 6 HOH A 24 624 484 HOH HOH . H 6 HOH A 25 625 486 HOH HOH . H 6 HOH A 26 626 538 HOH HOH . H 6 HOH A 27 627 548 HOH HOH . H 6 HOH A 28 628 599 HOH HOH . H 6 HOH A 29 629 549 HOH HOH . H 6 HOH A 30 630 487 HOH HOH . H 6 HOH A 31 631 633 HOH HOH . H 6 HOH A 32 632 592 HOH HOH . H 6 HOH A 33 633 546 HOH HOH . H 6 HOH A 34 634 498 HOH HOH . H 6 HOH A 35 635 551 HOH HOH . H 6 HOH A 36 636 576 HOH HOH . H 6 HOH A 37 637 583 HOH HOH . H 6 HOH A 38 638 491 HOH HOH . H 6 HOH A 39 639 497 HOH HOH . H 6 HOH A 40 640 563 HOH HOH . H 6 HOH A 41 641 516 HOH HOH . H 6 HOH A 42 642 628 HOH HOH . H 6 HOH A 43 643 504 HOH HOH . H 6 HOH A 44 644 631 HOH HOH . H 6 HOH A 45 645 642 HOH HOH . H 6 HOH A 46 646 501 HOH HOH . H 6 HOH A 47 647 595 HOH HOH . H 6 HOH A 48 648 605 HOH HOH . H 6 HOH A 49 649 594 HOH HOH . H 6 HOH A 50 650 564 HOH HOH . H 6 HOH A 51 651 490 HOH HOH . H 6 HOH A 52 652 524 HOH HOH . H 6 HOH A 53 653 539 HOH HOH . H 6 HOH A 54 654 579 HOH HOH . H 6 HOH A 55 655 617 HOH HOH . H 6 HOH A 56 656 489 HOH HOH . H 6 HOH A 57 657 589 HOH HOH . H 6 HOH A 58 658 530 HOH HOH . H 6 HOH A 59 659 654 HOH HOH . H 6 HOH A 60 660 578 HOH HOH . H 6 HOH A 61 661 532 HOH HOH . H 6 HOH A 62 662 513 HOH HOH . H 6 HOH A 63 663 512 HOH HOH . H 6 HOH A 64 664 587 HOH HOH . H 6 HOH A 65 665 537 HOH HOH . H 6 HOH A 66 666 626 HOH HOH . H 6 HOH A 67 667 531 HOH HOH . H 6 HOH A 68 668 503 HOH HOH . H 6 HOH A 69 669 492 HOH HOH . H 6 HOH A 70 670 494 HOH HOH . H 6 HOH A 71 671 586 HOH HOH . H 6 HOH A 72 672 508 HOH HOH . H 6 HOH A 73 673 533 HOH HOH . H 6 HOH A 74 674 569 HOH HOH . H 6 HOH A 75 675 525 HOH HOH . H 6 HOH A 76 676 590 HOH HOH . H 6 HOH A 77 677 502 HOH HOH . H 6 HOH A 78 678 495 HOH HOH . H 6 HOH A 79 679 585 HOH HOH . H 6 HOH A 80 680 550 HOH HOH . H 6 HOH A 81 681 608 HOH HOH . H 6 HOH A 82 682 621 HOH HOH . H 6 HOH A 83 683 609 HOH HOH . H 6 HOH A 84 684 625 HOH HOH . H 6 HOH A 85 685 510 HOH HOH . H 6 HOH A 86 686 541 HOH HOH . H 6 HOH A 87 687 632 HOH HOH . H 6 HOH A 88 688 496 HOH HOH . H 6 HOH A 89 689 581 HOH HOH . H 6 HOH A 90 690 571 HOH HOH . H 6 HOH A 91 691 485 HOH HOH . H 6 HOH A 92 692 619 HOH HOH . H 6 HOH A 93 693 574 HOH HOH . H 6 HOH A 94 694 529 HOH HOH . H 6 HOH A 95 695 561 HOH HOH . H 6 HOH A 96 696 665 HOH HOH . H 6 HOH A 97 697 543 HOH HOH . H 6 HOH A 98 698 572 HOH HOH . H 6 HOH A 99 699 540 HOH HOH . H 6 HOH A 100 700 596 HOH HOH . H 6 HOH A 101 701 506 HOH HOH . H 6 HOH A 102 702 588 HOH HOH . H 6 HOH A 103 703 553 HOH HOH . H 6 HOH A 104 704 664 HOH HOH . H 6 HOH A 105 705 567 HOH HOH . H 6 HOH A 106 706 624 HOH HOH . H 6 HOH A 107 707 547 HOH HOH . H 6 HOH A 108 708 604 HOH HOH . H 6 HOH A 109 709 505 HOH HOH . H 6 HOH A 110 710 555 HOH HOH . H 6 HOH A 111 711 493 HOH HOH . H 6 HOH A 112 712 552 HOH HOH . H 6 HOH A 113 713 515 HOH HOH . H 6 HOH A 114 714 612 HOH HOH . H 6 HOH A 115 715 636 HOH HOH . H 6 HOH A 116 716 499 HOH HOH . H 6 HOH A 117 717 536 HOH HOH . H 6 HOH A 118 718 634 HOH HOH . H 6 HOH A 119 719 521 HOH HOH . H 6 HOH A 120 720 523 HOH HOH . H 6 HOH A 121 721 651 HOH HOH . H 6 HOH A 122 722 597 HOH HOH . H 6 HOH A 123 723 565 HOH HOH . H 6 HOH A 124 724 558 HOH HOH . H 6 HOH A 125 725 488 HOH HOH . H 6 HOH A 126 726 528 HOH HOH . H 6 HOH A 127 727 641 HOH HOH . H 6 HOH A 128 728 646 HOH HOH . H 6 HOH A 129 729 593 HOH HOH . H 6 HOH A 130 730 607 HOH HOH . H 6 HOH A 131 731 616 HOH HOH . H 6 HOH A 132 732 614 HOH HOH . H 6 HOH A 133 733 517 HOH HOH . H 6 HOH A 134 734 627 HOH HOH . H 6 HOH A 135 735 526 HOH HOH . H 6 HOH A 136 736 534 HOH HOH . H 6 HOH A 137 737 629 HOH HOH . H 6 HOH A 138 738 639 HOH HOH . H 6 HOH A 139 739 613 HOH HOH . H 6 HOH A 140 740 598 HOH HOH . H 6 HOH A 141 741 575 HOH HOH . H 6 HOH A 142 742 615 HOH HOH . H 6 HOH A 143 743 509 HOH HOH . H 6 HOH A 144 744 667 HOH HOH . H 6 HOH A 145 745 638 HOH HOH . H 6 HOH A 146 746 635 HOH HOH . H 6 HOH A 147 747 582 HOH HOH . H 6 HOH A 148 748 507 HOH HOH . H 6 HOH A 149 749 650 HOH HOH . H 6 HOH A 150 750 545 HOH HOH . H 6 HOH A 151 751 601 HOH HOH . H 6 HOH A 152 752 652 HOH HOH . H 6 HOH A 153 753 659 HOH HOH . H 6 HOH A 154 754 580 HOH HOH . H 6 HOH A 155 755 562 HOH HOH . H 6 HOH A 156 756 660 HOH HOH . H 6 HOH A 157 757 644 HOH HOH . H 6 HOH A 158 758 603 HOH HOH . H 6 HOH A 159 759 511 HOH HOH . H 6 HOH A 160 760 655 HOH HOH . H 6 HOH A 161 761 514 HOH HOH . H 6 HOH A 162 762 647 HOH HOH . H 6 HOH A 163 763 653 HOH HOH . H 6 HOH A 164 764 600 HOH HOH . H 6 HOH A 165 765 649 HOH HOH . H 6 HOH A 166 766 618 HOH HOH . H 6 HOH A 167 767 648 HOH HOH . H 6 HOH A 168 768 556 HOH HOH . H 6 HOH A 169 769 630 HOH HOH . H 6 HOH A 170 770 544 HOH HOH . H 6 HOH A 171 771 666 HOH HOH . H 6 HOH A 172 772 518 HOH HOH . H 6 HOH A 173 773 573 HOH HOH . H 6 HOH A 174 774 560 HOH HOH . H 6 HOH A 175 775 577 HOH HOH . H 6 HOH A 176 776 557 HOH HOH . H 6 HOH A 177 777 584 HOH HOH . H 6 HOH A 178 778 637 HOH HOH . H 6 HOH A 179 779 606 HOH HOH . H 6 HOH A 180 780 554 HOH HOH . H 6 HOH A 181 781 611 HOH HOH . H 6 HOH A 182 782 640 HOH HOH . H 6 HOH A 183 783 656 HOH HOH . H 6 HOH A 184 784 662 HOH HOH . H 6 HOH A 185 785 622 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.262 _atom_site.Cartn_y 4.12 _atom_site.Cartn_z -0.904 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #