data_6D94 # _model_server_result.job_id i52aB6iExjJnSOiOK1Br3w _model_server_result.datetime_utc '2024-11-29 17:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6D94 # _exptl.entry_id 6D94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.569 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D94 _cell.length_a 55.437 _cell.length_b 87.623 _cell.length_c 121.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H29 N3 O4' _chem_comp.formula_weight 495.569 _chem_comp.id EDK _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 EDK sing 83 n n C2 O EDK sing 84 n n C24 C23 EDK doub 85 n y C24 C3 EDK sing 86 n y C1 N EDK sing 87 n n C23 C6 EDK sing 88 n y O C3 EDK sing 89 n n C3 C4 EDK doub 90 n y C6 C7 EDK sing 91 n n C6 C5 EDK doub 92 n y C4 C5 EDK sing 93 n y C7 C8 EDK sing 94 n n N C EDK sing 95 n n N C25 EDK sing 96 n n N2 C25 EDK doub 97 n y N2 C26 EDK sing 98 n y O2 C22 EDK doub 99 n n C25 C29 EDK sing 100 n y C26 C27 EDK doub 101 n y C8 C22 EDK sing 102 n n C8 N1 EDK sing 103 n n C22 O3 EDK sing 104 n n N1 C9 EDK sing 105 n n C29 C28 EDK doub 106 n y C27 C28 EDK sing 107 n y O1 C15 EDK doub 108 n n C9 C14 EDK doub 109 n y C9 C10 EDK sing 110 n y C14 C13 EDK sing 111 n y C15 C10 EDK sing 112 n n C15 C16 EDK sing 113 n n C10 C11 EDK doub 114 n y C21 C16 EDK doub 115 n y C21 C20 EDK sing 116 n y C13 C12 EDK doub 117 n y C16 C17 EDK sing 118 n y C20 C19 EDK doub 119 n y C11 C12 EDK sing 120 n y C17 C18 EDK doub 121 n y C19 C18 EDK sing 122 n y O3 H1 EDK sing 123 n n C4 H2 EDK sing 124 n n C5 H3 EDK sing 125 n n N1 H4 EDK sing 126 n n C7 H5 EDK sing 127 n n C7 H6 EDK sing 128 n n C8 H7 EDK sing 129 n n C11 H8 EDK sing 130 n n C12 H9 EDK sing 131 n n C13 H10 EDK sing 132 n n C14 H11 EDK sing 133 n n C21 H12 EDK sing 134 n n C20 H13 EDK sing 135 n n C19 H14 EDK sing 136 n n C18 H15 EDK sing 137 n n C17 H16 EDK sing 138 n n C23 H17 EDK sing 139 n n C24 H18 EDK sing 140 n n C2 H19 EDK sing 141 n n C2 H20 EDK sing 142 n n C1 H21 EDK sing 143 n n C1 H22 EDK sing 144 n n C H23 EDK sing 145 n n C H24 EDK sing 146 n n C H25 EDK sing 147 n n C29 H26 EDK sing 148 n n C28 H27 EDK sing 149 n n C27 H28 EDK sing 150 n n C26 H29 EDK sing 151 n n # _atom_sites.entry_id 6D94 _atom_sites.fract_transf_matrix[1][1] 0.018038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDK A 1 501 1 EDK 129 . D 4 HOH A 1 601 590 HOH HOH . D 4 HOH A 2 602 516 HOH HOH . D 4 HOH A 3 603 592 HOH HOH . D 4 HOH A 4 604 526 HOH HOH . D 4 HOH A 5 605 574 HOH HOH . D 4 HOH A 6 606 594 HOH HOH . D 4 HOH A 7 607 596 HOH HOH . D 4 HOH A 8 608 549 HOH HOH . D 4 HOH A 9 609 560 HOH HOH . D 4 HOH A 10 610 545 HOH HOH . D 4 HOH A 11 611 540 HOH HOH . D 4 HOH A 12 612 593 HOH HOH . D 4 HOH A 13 613 533 HOH HOH . D 4 HOH A 14 614 535 HOH HOH . D 4 HOH A 15 615 586 HOH HOH . D 4 HOH A 16 616 504 HOH HOH . D 4 HOH A 17 617 500 HOH HOH . D 4 HOH A 18 618 589 HOH HOH . D 4 HOH A 19 619 503 HOH HOH . D 4 HOH A 20 620 501 HOH HOH . D 4 HOH A 21 621 489 HOH HOH . D 4 HOH A 22 622 541 HOH HOH . D 4 HOH A 23 623 584 HOH HOH . D 4 HOH A 24 624 527 HOH HOH . D 4 HOH A 25 625 568 HOH HOH . D 4 HOH A 26 626 517 HOH HOH . D 4 HOH A 27 627 585 HOH HOH . D 4 HOH A 28 628 563 HOH HOH . D 4 HOH A 29 629 498 HOH HOH . D 4 HOH A 30 630 551 HOH HOH . D 4 HOH A 31 631 490 HOH HOH . D 4 HOH A 32 632 534 HOH HOH . D 4 HOH A 33 633 554 HOH HOH . D 4 HOH A 34 634 482 HOH HOH . D 4 HOH A 35 635 479 HOH HOH . D 4 HOH A 36 636 485 HOH HOH . D 4 HOH A 37 637 544 HOH HOH . D 4 HOH A 38 638 513 HOH HOH . D 4 HOH A 39 639 488 HOH HOH . D 4 HOH A 40 640 507 HOH HOH . D 4 HOH A 41 641 502 HOH HOH . D 4 HOH A 42 642 580 HOH HOH . D 4 HOH A 43 643 486 HOH HOH . D 4 HOH A 44 644 483 HOH HOH . D 4 HOH A 45 645 514 HOH HOH . D 4 HOH A 46 646 573 HOH HOH . D 4 HOH A 47 647 480 HOH HOH . D 4 HOH A 48 648 532 HOH HOH . D 4 HOH A 49 649 481 HOH HOH . D 4 HOH A 50 650 528 HOH HOH . D 4 HOH A 51 651 579 HOH HOH . D 4 HOH A 52 652 493 HOH HOH . D 4 HOH A 53 653 524 HOH HOH . D 4 HOH A 54 654 492 HOH HOH . D 4 HOH A 55 655 487 HOH HOH . D 4 HOH A 56 656 523 HOH HOH . D 4 HOH A 57 657 515 HOH HOH . D 4 HOH A 58 658 525 HOH HOH . D 4 HOH A 59 659 496 HOH HOH . D 4 HOH A 60 660 566 HOH HOH . D 4 HOH A 61 661 547 HOH HOH . D 4 HOH A 62 662 484 HOH HOH . D 4 HOH A 63 663 557 HOH HOH . D 4 HOH A 64 664 539 HOH HOH . D 4 HOH A 65 665 511 HOH HOH . D 4 HOH A 66 666 583 HOH HOH . D 4 HOH A 67 667 537 HOH HOH . D 4 HOH A 68 668 521 HOH HOH . D 4 HOH A 69 669 536 HOH HOH . D 4 HOH A 70 670 518 HOH HOH . D 4 HOH A 71 671 510 HOH HOH . D 4 HOH A 72 672 508 HOH HOH . D 4 HOH A 73 673 569 HOH HOH . D 4 HOH A 74 674 520 HOH HOH . D 4 HOH A 75 675 530 HOH HOH . D 4 HOH A 76 676 567 HOH HOH . D 4 HOH A 77 677 495 HOH HOH . D 4 HOH A 78 678 519 HOH HOH . D 4 HOH A 79 679 561 HOH HOH . D 4 HOH A 80 680 538 HOH HOH . D 4 HOH A 81 681 531 HOH HOH . D 4 HOH A 82 682 522 HOH HOH . D 4 HOH A 83 683 572 HOH HOH . D 4 HOH A 84 684 542 HOH HOH . D 4 HOH A 85 685 494 HOH HOH . D 4 HOH A 86 686 543 HOH HOH . D 4 HOH A 87 687 564 HOH HOH . D 4 HOH A 88 688 497 HOH HOH . D 4 HOH A 89 689 491 HOH HOH . D 4 HOH A 90 690 598 HOH HOH . D 4 HOH A 91 691 570 HOH HOH . D 4 HOH A 92 692 548 HOH HOH . D 4 HOH A 93 693 588 HOH HOH . D 4 HOH A 94 694 581 HOH HOH . D 4 HOH A 95 695 556 HOH HOH . D 4 HOH A 96 696 578 HOH HOH . D 4 HOH A 97 697 575 HOH HOH . D 4 HOH A 98 698 595 HOH HOH . D 4 HOH A 99 699 512 HOH HOH . D 4 HOH A 100 700 597 HOH HOH . D 4 HOH A 101 701 546 HOH HOH . D 4 HOH A 102 702 577 HOH HOH . D 4 HOH A 103 703 553 HOH HOH . D 4 HOH A 104 704 565 HOH HOH . D 4 HOH A 105 705 600 HOH HOH . D 4 HOH A 106 706 506 HOH HOH . D 4 HOH A 107 707 582 HOH HOH . D 4 HOH A 108 708 591 HOH HOH . D 4 HOH A 109 709 505 HOH HOH . D 4 HOH A 110 710 571 HOH HOH . D 4 HOH A 111 711 499 HOH HOH . D 4 HOH A 112 712 529 HOH HOH . D 4 HOH A 113 713 576 HOH HOH . D 4 HOH A 114 714 550 HOH HOH . D 4 HOH A 115 715 602 HOH HOH . D 4 HOH A 116 716 552 HOH HOH . D 4 HOH A 117 717 509 HOH HOH . D 4 HOH A 118 718 559 HOH HOH . D 4 HOH A 119 719 587 HOH HOH . D 4 HOH A 120 720 558 HOH HOH . D 4 HOH A 121 721 562 HOH HOH . D 4 HOH A 122 722 601 HOH HOH . D 4 HOH A 123 723 555 HOH HOH . D 4 HOH A 124 724 599 HOH HOH . E 4 HOH B 1 401 303 HOH HOH . E 4 HOH B 2 402 300 HOH HOH . E 4 HOH B 3 403 302 HOH HOH . E 4 HOH B 4 404 299 HOH HOH . E 4 HOH B 5 405 301 HOH HOH . E 4 HOH B 6 406 298 HOH HOH . E 4 HOH B 7 407 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 EDK . . . C 3 -19.771 -21.004 15.506 1 41.9 -1 O3 EDK 501 A 1 HETATM 2 C C4 EDK . . . C 3 -23.352 -17.675 10.741 1 27.35 ? C4 EDK 501 A 1 HETATM 3 C C5 EDK . . . C 3 -22.338 -17.85 11.68 1 24.09 ? C5 EDK 501 A 1 HETATM 4 C C6 EDK . . . C 3 -22.644 -18.438 12.886 1 29.07 ? C6 EDK 501 A 1 HETATM 5 N N1 EDK . . . C 3 -21.745 -21.134 13.752 1 27.91 ? N1 EDK 501 A 1 HETATM 6 C C7 EDK . . . C 3 -21.52 -18.658 13.919 1 37.26 ? C7 EDK 501 A 1 HETATM 7 C C8 EDK . . . C 3 -20.839 -19.991 13.609 1 38.34 ? C8 EDK 501 A 1 HETATM 8 N N2 EDK . . . C 3 -25.711 -19.375 6.013 1 25.88 ? N2 EDK 501 A 1 HETATM 9 C C9 EDK . . . C 3 -21.364 -22.384 13.038 1 30.03 ? C9 EDK 501 A 1 HETATM 10 C C10 EDK . . . C 3 -22.332 -23.324 12.587 1 33.18 ? C10 EDK 501 A 1 HETATM 11 C C11 EDK . . . C 3 -21.969 -24.486 11.903 1 34.93 ? C11 EDK 501 A 1 HETATM 12 C C12 EDK . . . C 3 -20.612 -24.695 11.659 1 42.39 ? C12 EDK 501 A 1 HETATM 13 C C13 EDK . . . C 3 -19.647 -23.776 12.084 1 49.22 ? C13 EDK 501 A 1 HETATM 14 C C14 EDK . . . C 3 -19.999 -22.613 12.765 1 31.96 ? C14 EDK 501 A 1 HETATM 15 C C15 EDK . . . C 3 -23.83 -23.093 12.873 1 33.63 ? C15 EDK 501 A 1 HETATM 16 C C22 EDK . . . C 3 -19.661 -20.212 14.567 1 41.17 ? C22 EDK 501 A 1 HETATM 17 O O2 EDK . . . C 3 -18.607 -19.62 14.377 1 37.21 ? O2 EDK 501 A 1 HETATM 18 C C16 EDK . . . C 3 -24.944 -24.077 12.512 1 35.72 ? C16 EDK 501 A 1 HETATM 19 C C21 EDK . . . C 3 -26.034 -23.625 11.811 1 29.15 ? C21 EDK 501 A 1 HETATM 20 C C20 EDK . . . C 3 -27.061 -24.481 11.445 1 32.07 ? C20 EDK 501 A 1 HETATM 21 C C19 EDK . . . C 3 -27.028 -25.8 11.824 1 34.8 ? C19 EDK 501 A 1 HETATM 22 C C18 EDK . . . C 3 -25.939 -26.255 12.539 1 32.86 ? C18 EDK 501 A 1 HETATM 23 C C17 EDK . . . C 3 -24.91 -25.397 12.889 1 37.07 ? C17 EDK 501 A 1 HETATM 24 O O1 EDK . . . C 3 -24.137 -22.07 13.371 1 35.24 ? O1 EDK 501 A 1 HETATM 25 C C23 EDK . . . C 3 -23.941 -18.859 13.196 1 24.45 ? C23 EDK 501 A 1 HETATM 26 C C24 EDK . . . C 3 -24.962 -18.672 12.249 1 22.02 ? C24 EDK 501 A 1 HETATM 27 C C3 EDK . . . C 3 -24.646 -18.098 11.028 1 20.69 ? C3 EDK 501 A 1 HETATM 28 O O EDK . . . C 3 -25.669 -17.916 10.089 1 21.09 ? O EDK 501 A 1 HETATM 29 C C2 EDK . . . C 3 -25.308 -17.596 8.727 1 18.03 ? C2 EDK 501 A 1 HETATM 30 C C1 EDK . . . C 3 -26.646 -17.69 7.893 1 17.16 ? C1 EDK 501 A 1 HETATM 31 N N EDK . . . C 3 -27.056 -19.092 7.926 1 21.36 ? N EDK 501 A 1 HETATM 32 C C EDK . . . C 3 -28.038 -19.593 8.875 1 25.64 ? C EDK 501 A 1 HETATM 33 C C25 EDK . . . C 3 -26.464 -19.947 6.941 1 25.5 ? C25 EDK 501 A 1 HETATM 34 C C29 EDK . . . C 3 -26.689 -21.294 6.994 1 28.59 ? C29 EDK 501 A 1 HETATM 35 C C28 EDK . . . C 3 -26.117 -22.072 6.009 1 27.45 ? C28 EDK 501 A 1 HETATM 36 C C27 EDK . . . C 3 -25.348 -21.433 5.048 1 19.81 ? C27 EDK 501 A 1 HETATM 37 C C26 EDK . . . C 3 -25.147 -20.056 5.05 1 18.97 ? C26 EDK 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #