data_6D9S # _model_server_result.job_id YEM-IY6Tfp5mDhTNmGg8rw _model_server_result.datetime_utc '2024-11-06 01:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6D9S # _exptl.entry_id 6D9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6D9S _cell.length_a 82.611 _cell.length_b 82.611 _cell.length_c 174.916 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 123.9165 -71.543225 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 162 A ASP 159 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 C O1C G4P . A G4P 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 C O1D G4P . A G4P 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 D MG MG . A MG 202 1_555 M O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 D MG MG . A MG 202 1_555 M O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 D MG MG . A MG 202 1_555 M O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 B OD1 ASP 162 B ASP 159 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 B OD2 ASP 162 B ASP 159 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 I O2D G4P . B G4P 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc10 J MG MG . B MG 202 1_555 N O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 J MG MG . B MG 202 1_555 N O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc12 J MG MG . B MG 202 1_555 N O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6D9S _atom_sites.fract_transf_matrix[1][1] 0.012105 _atom_sites.fract_transf_matrix[1][2] 0.006989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G4P A 1 201 1 G4P G4P . D 3 MG A 1 202 2 MG MG . E 4 PEG A 1 203 1 PEG PEG . F 4 PEG A 1 204 2 PEG PEG . G 4 PEG A 1 205 8 PEG PEG . H 4 PEG A 1 206 9 PEG PEG . I 2 G4P B 1 201 2 G4P G4P . J 3 MG B 1 202 4 MG MG . K 4 PEG B 1 203 3 PEG PEG . L 4 PEG B 1 204 4 PEG PEG . M 5 HOH A 1 301 128 HOH HOH . M 5 HOH A 2 302 58 HOH HOH . M 5 HOH A 3 303 63 HOH HOH . M 5 HOH A 4 304 102 HOH HOH . M 5 HOH A 5 305 7 HOH HOH . M 5 HOH A 6 306 15 HOH HOH . M 5 HOH A 7 307 100 HOH HOH . M 5 HOH A 8 308 85 HOH HOH . M 5 HOH A 9 309 27 HOH HOH . M 5 HOH A 10 310 11 HOH HOH . M 5 HOH A 11 311 49 HOH HOH . M 5 HOH A 12 312 66 HOH HOH . M 5 HOH A 13 313 29 HOH HOH . M 5 HOH A 14 314 6 HOH HOH . M 5 HOH A 15 315 16 HOH HOH . M 5 HOH A 16 316 103 HOH HOH . M 5 HOH A 17 317 52 HOH HOH . M 5 HOH A 18 318 30 HOH HOH . M 5 HOH A 19 319 77 HOH HOH . M 5 HOH A 20 320 26 HOH HOH . M 5 HOH A 21 321 2 HOH HOH . M 5 HOH A 22 322 71 HOH HOH . M 5 HOH A 23 323 118 HOH HOH . M 5 HOH A 24 324 10 HOH HOH . M 5 HOH A 25 325 73 HOH HOH . M 5 HOH A 26 326 47 HOH HOH . M 5 HOH A 27 327 68 HOH HOH . M 5 HOH A 28 328 117 HOH HOH . M 5 HOH A 29 329 20 HOH HOH . M 5 HOH A 30 330 115 HOH HOH . M 5 HOH A 31 331 69 HOH HOH . M 5 HOH A 32 332 17 HOH HOH . M 5 HOH A 33 333 18 HOH HOH . M 5 HOH A 34 334 54 HOH HOH . M 5 HOH A 35 335 22 HOH HOH . M 5 HOH A 36 336 80 HOH HOH . M 5 HOH A 37 337 90 HOH HOH . M 5 HOH A 38 338 61 HOH HOH . M 5 HOH A 39 339 57 HOH HOH . M 5 HOH A 40 340 53 HOH HOH . M 5 HOH A 41 341 76 HOH HOH . M 5 HOH A 42 342 116 HOH HOH . M 5 HOH A 43 343 79 HOH HOH . M 5 HOH A 44 344 86 HOH HOH . M 5 HOH A 45 345 74 HOH HOH . M 5 HOH A 46 346 95 HOH HOH . M 5 HOH A 47 347 64 HOH HOH . M 5 HOH A 48 348 67 HOH HOH . M 5 HOH A 49 349 42 HOH HOH . M 5 HOH A 50 350 45 HOH HOH . M 5 HOH A 51 351 84 HOH HOH . M 5 HOH A 52 352 109 HOH HOH . M 5 HOH A 53 353 104 HOH HOH . M 5 HOH A 54 354 36 HOH HOH . M 5 HOH A 55 355 19 HOH HOH . M 5 HOH A 56 356 126 HOH HOH . M 5 HOH A 57 357 114 HOH HOH . M 5 HOH A 58 358 127 HOH HOH . M 5 HOH A 59 359 122 HOH HOH . M 5 HOH A 60 360 121 HOH HOH . N 5 HOH B 1 301 83 HOH HOH . N 5 HOH B 2 302 99 HOH HOH . N 5 HOH B 3 303 33 HOH HOH . N 5 HOH B 4 304 50 HOH HOH . N 5 HOH B 5 305 107 HOH HOH . N 5 HOH B 6 306 72 HOH HOH . N 5 HOH B 7 307 1 HOH HOH . N 5 HOH B 8 308 101 HOH HOH . N 5 HOH B 9 309 14 HOH HOH . N 5 HOH B 10 310 12 HOH HOH . N 5 HOH B 11 311 8 HOH HOH . N 5 HOH B 12 312 37 HOH HOH . N 5 HOH B 13 313 9 HOH HOH . N 5 HOH B 14 314 48 HOH HOH . N 5 HOH B 15 315 60 HOH HOH . N 5 HOH B 16 316 23 HOH HOH . N 5 HOH B 17 317 92 HOH HOH . N 5 HOH B 18 318 94 HOH HOH . N 5 HOH B 19 319 78 HOH HOH . N 5 HOH B 20 320 65 HOH HOH . N 5 HOH B 21 321 35 HOH HOH . N 5 HOH B 22 322 3 HOH HOH . N 5 HOH B 23 323 46 HOH HOH . N 5 HOH B 24 324 28 HOH HOH . N 5 HOH B 25 325 31 HOH HOH . N 5 HOH B 26 326 93 HOH HOH . N 5 HOH B 27 327 25 HOH HOH . N 5 HOH B 28 328 51 HOH HOH . N 5 HOH B 29 329 13 HOH HOH . N 5 HOH B 30 330 44 HOH HOH . N 5 HOH B 31 331 24 HOH HOH . N 5 HOH B 32 332 4 HOH HOH . N 5 HOH B 33 333 82 HOH HOH . N 5 HOH B 34 334 32 HOH HOH . N 5 HOH B 35 335 123 HOH HOH . N 5 HOH B 36 336 40 HOH HOH . N 5 HOH B 37 337 55 HOH HOH . N 5 HOH B 38 338 97 HOH HOH . N 5 HOH B 39 339 81 HOH HOH . N 5 HOH B 40 340 34 HOH HOH . N 5 HOH B 41 341 56 HOH HOH . N 5 HOH B 42 342 39 HOH HOH . N 5 HOH B 43 343 59 HOH HOH . N 5 HOH B 44 344 41 HOH HOH . N 5 HOH B 45 345 125 HOH HOH . N 5 HOH B 46 346 108 HOH HOH . N 5 HOH B 47 347 21 HOH HOH . N 5 HOH B 48 348 70 HOH HOH . N 5 HOH B 49 349 89 HOH HOH . N 5 HOH B 50 350 5 HOH HOH . N 5 HOH B 51 351 38 HOH HOH . N 5 HOH B 52 352 112 HOH HOH . N 5 HOH B 53 353 119 HOH HOH . N 5 HOH B 54 354 96 HOH HOH . N 5 HOH B 55 355 111 HOH HOH . N 5 HOH B 56 356 43 HOH HOH . N 5 HOH B 57 357 120 HOH HOH . N 5 HOH B 58 358 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 67.149 _atom_site.Cartn_y -21.857 _atom_site.Cartn_z 14.55 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #