data_6D9S
#
_model_server_result.job_id            f9YbLcow-j7MY965r90pYw 
_model_server_result.datetime_utc      '2024-11-06 01:27:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":204}' 
#
_entry.id    6D9S 
#
_exptl.entry_id    6D9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6D9S 
_cell.length_a            82.611 
_cell.length_b            82.611 
_cell.length_c            174.916 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 123.9165 -71.543225 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 162 A ASP 159 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc2 C O1C G4P . A G4P 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 C O1D G4P . A G4P 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc4 D MG MG . A MG 202 1_555 M O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc5 D MG MG . A MG 202 1_555 M O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc6 D MG MG . A MG 202 1_555 M O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc7 B OD1 ASP 162 B ASP 159 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc8 B OD2 ASP 162 B ASP 159 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc9 I O2D G4P . B G4P 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc10 J MG MG . B MG 202 1_555 N O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc11 J MG MG . B MG 202 1_555 N O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc12 J MG MG . B MG 202 1_555 N O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 279 n n 
C1 C2 PEG sing 280 n n 
C1 H11 PEG sing 281 n n 
C1 H12 PEG sing 282 n n 
O1 HO1 PEG sing 283 n n 
C2 O2 PEG sing 284 n n 
C2 H21 PEG sing 285 n n 
C2 H22 PEG sing 286 n n 
O2 C3 PEG sing 287 n n 
C3 C4 PEG sing 288 n n 
C3 H31 PEG sing 289 n n 
C3 H32 PEG sing 290 n n 
C4 O4 PEG sing 291 n n 
C4 H41 PEG sing 292 n n 
C4 H42 PEG sing 293 n n 
O4 HO4 PEG sing 294 n n 
#
_atom_sites.entry_id                     6D9S 
_atom_sites.fract_transf_matrix[1][1]    0.012105 
_atom_sites.fract_transf_matrix[1][2]    0.006989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G4P A 1 201 1 G4P G4P . 
D 3 MG A 1 202 2 MG MG . 
E 4 PEG A 1 203 1 PEG PEG . 
F 4 PEG A 1 204 2 PEG PEG . 
G 4 PEG A 1 205 8 PEG PEG . 
H 4 PEG A 1 206 9 PEG PEG . 
I 2 G4P B 1 201 2 G4P G4P . 
J 3 MG B 1 202 4 MG MG . 
K 4 PEG B 1 203 3 PEG PEG . 
L 4 PEG B 1 204 4 PEG PEG . 
M 5 HOH A 1 301 128 HOH HOH . 
M 5 HOH A 2 302 58 HOH HOH . 
M 5 HOH A 3 303 63 HOH HOH . 
M 5 HOH A 4 304 102 HOH HOH . 
M 5 HOH A 5 305 7 HOH HOH . 
M 5 HOH A 6 306 15 HOH HOH . 
M 5 HOH A 7 307 100 HOH HOH . 
M 5 HOH A 8 308 85 HOH HOH . 
M 5 HOH A 9 309 27 HOH HOH . 
M 5 HOH A 10 310 11 HOH HOH . 
M 5 HOH A 11 311 49 HOH HOH . 
M 5 HOH A 12 312 66 HOH HOH . 
M 5 HOH A 13 313 29 HOH HOH . 
M 5 HOH A 14 314 6 HOH HOH . 
M 5 HOH A 15 315 16 HOH HOH . 
M 5 HOH A 16 316 103 HOH HOH . 
M 5 HOH A 17 317 52 HOH HOH . 
M 5 HOH A 18 318 30 HOH HOH . 
M 5 HOH A 19 319 77 HOH HOH . 
M 5 HOH A 20 320 26 HOH HOH . 
M 5 HOH A 21 321 2 HOH HOH . 
M 5 HOH A 22 322 71 HOH HOH . 
M 5 HOH A 23 323 118 HOH HOH . 
M 5 HOH A 24 324 10 HOH HOH . 
M 5 HOH A 25 325 73 HOH HOH . 
M 5 HOH A 26 326 47 HOH HOH . 
M 5 HOH A 27 327 68 HOH HOH . 
M 5 HOH A 28 328 117 HOH HOH . 
M 5 HOH A 29 329 20 HOH HOH . 
M 5 HOH A 30 330 115 HOH HOH . 
M 5 HOH A 31 331 69 HOH HOH . 
M 5 HOH A 32 332 17 HOH HOH . 
M 5 HOH A 33 333 18 HOH HOH . 
M 5 HOH A 34 334 54 HOH HOH . 
M 5 HOH A 35 335 22 HOH HOH . 
M 5 HOH A 36 336 80 HOH HOH . 
M 5 HOH A 37 337 90 HOH HOH . 
M 5 HOH A 38 338 61 HOH HOH . 
M 5 HOH A 39 339 57 HOH HOH . 
M 5 HOH A 40 340 53 HOH HOH . 
M 5 HOH A 41 341 76 HOH HOH . 
M 5 HOH A 42 342 116 HOH HOH . 
M 5 HOH A 43 343 79 HOH HOH . 
M 5 HOH A 44 344 86 HOH HOH . 
M 5 HOH A 45 345 74 HOH HOH . 
M 5 HOH A 46 346 95 HOH HOH . 
M 5 HOH A 47 347 64 HOH HOH . 
M 5 HOH A 48 348 67 HOH HOH . 
M 5 HOH A 49 349 42 HOH HOH . 
M 5 HOH A 50 350 45 HOH HOH . 
M 5 HOH A 51 351 84 HOH HOH . 
M 5 HOH A 52 352 109 HOH HOH . 
M 5 HOH A 53 353 104 HOH HOH . 
M 5 HOH A 54 354 36 HOH HOH . 
M 5 HOH A 55 355 19 HOH HOH . 
M 5 HOH A 56 356 126 HOH HOH . 
M 5 HOH A 57 357 114 HOH HOH . 
M 5 HOH A 58 358 127 HOH HOH . 
M 5 HOH A 59 359 122 HOH HOH . 
M 5 HOH A 60 360 121 HOH HOH . 
N 5 HOH B 1 301 83 HOH HOH . 
N 5 HOH B 2 302 99 HOH HOH . 
N 5 HOH B 3 303 33 HOH HOH . 
N 5 HOH B 4 304 50 HOH HOH . 
N 5 HOH B 5 305 107 HOH HOH . 
N 5 HOH B 6 306 72 HOH HOH . 
N 5 HOH B 7 307 1 HOH HOH . 
N 5 HOH B 8 308 101 HOH HOH . 
N 5 HOH B 9 309 14 HOH HOH . 
N 5 HOH B 10 310 12 HOH HOH . 
N 5 HOH B 11 311 8 HOH HOH . 
N 5 HOH B 12 312 37 HOH HOH . 
N 5 HOH B 13 313 9 HOH HOH . 
N 5 HOH B 14 314 48 HOH HOH . 
N 5 HOH B 15 315 60 HOH HOH . 
N 5 HOH B 16 316 23 HOH HOH . 
N 5 HOH B 17 317 92 HOH HOH . 
N 5 HOH B 18 318 94 HOH HOH . 
N 5 HOH B 19 319 78 HOH HOH . 
N 5 HOH B 20 320 65 HOH HOH . 
N 5 HOH B 21 321 35 HOH HOH . 
N 5 HOH B 22 322 3 HOH HOH . 
N 5 HOH B 23 323 46 HOH HOH . 
N 5 HOH B 24 324 28 HOH HOH . 
N 5 HOH B 25 325 31 HOH HOH . 
N 5 HOH B 26 326 93 HOH HOH . 
N 5 HOH B 27 327 25 HOH HOH . 
N 5 HOH B 28 328 51 HOH HOH . 
N 5 HOH B 29 329 13 HOH HOH . 
N 5 HOH B 30 330 44 HOH HOH . 
N 5 HOH B 31 331 24 HOH HOH . 
N 5 HOH B 32 332 4 HOH HOH . 
N 5 HOH B 33 333 82 HOH HOH . 
N 5 HOH B 34 334 32 HOH HOH . 
N 5 HOH B 35 335 123 HOH HOH . 
N 5 HOH B 36 336 40 HOH HOH . 
N 5 HOH B 37 337 55 HOH HOH . 
N 5 HOH B 38 338 97 HOH HOH . 
N 5 HOH B 39 339 81 HOH HOH . 
N 5 HOH B 40 340 34 HOH HOH . 
N 5 HOH B 41 341 56 HOH HOH . 
N 5 HOH B 42 342 39 HOH HOH . 
N 5 HOH B 43 343 59 HOH HOH . 
N 5 HOH B 44 344 41 HOH HOH . 
N 5 HOH B 45 345 125 HOH HOH . 
N 5 HOH B 46 346 108 HOH HOH . 
N 5 HOH B 47 347 21 HOH HOH . 
N 5 HOH B 48 348 70 HOH HOH . 
N 5 HOH B 49 349 89 HOH HOH . 
N 5 HOH B 50 350 5 HOH HOH . 
N 5 HOH B 51 351 38 HOH HOH . 
N 5 HOH B 52 352 112 HOH HOH . 
N 5 HOH B 53 353 119 HOH HOH . 
N 5 HOH B 54 354 96 HOH HOH . 
N 5 HOH B 55 355 111 HOH HOH . 
N 5 HOH B 56 356 43 HOH HOH . 
N 5 HOH B 57 357 120 HOH HOH . 
N 5 HOH B 58 358 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . F 4 39.411 -33.784 20.077 1 171.5 ? C1 PEG 204 A 1 
HETATM 2 O O1 PEG . . . F 4 38.281 -34.601 19.949 1 169.39 ? O1 PEG 204 A 1 
HETATM 3 C C2 PEG . . . F 4 39.165 -32.457 19.36 1 122.25 ? C2 PEG 204 A 1 
HETATM 4 O O2 PEG . . . F 4 40.24 -31.59 19.607 1 97.8 ? O2 PEG 204 A 1 
HETATM 5 C C3 PEG . . . F 4 39.964 -30.445 20.368 1 97.98 ? C3 PEG 204 A 1 
HETATM 6 C C4 PEG . . . F 4 40.871 -30.42 21.6 1 98.17 ? C4 PEG 204 A 1 
HETATM 7 O O4 PEG . . . F 4 40.145 -29.959 22.707 1 96.39 ? O4 PEG 204 A 1 
HETATM 8 H H11 PEG . . . F 4 39.584 -33.616 21.017 1 206.11 ? H11 PEG 204 A 1 
HETATM 9 H H12 PEG . . . F 4 40.177 -34.227 19.681 1 206.11 ? H12 PEG 204 A 1 
HETATM 10 H HO1 PEG . . . F 4 38.26 -35.158 20.59 1 203.59 ? HO1 PEG 204 A 1 
HETATM 11 H H21 PEG . . . F 4 39.088 -32.613 18.406 1 147.02 ? H21 PEG 204 A 1 
HETATM 12 H H22 PEG . . . F 4 38.345 -32.057 19.69 1 147.02 ? H22 PEG 204 A 1 
HETATM 13 H H31 PEG . . . F 4 40.126 -29.653 19.832 1 117.89 ? H31 PEG 204 A 1 
HETATM 14 H H32 PEG . . . F 4 39.036 -30.46 20.65 1 117.89 ? H32 PEG 204 A 1 
HETATM 15 H H41 PEG . . . F 4 41.198 -31.316 21.778 1 118.13 ? H41 PEG 204 A 1 
HETATM 16 H H42 PEG . . . F 4 41.622 -29.829 21.436 1 118.13 ? H42 PEG 204 A 1 
HETATM 17 H HO4 PEG . . . F 4 40.672 -29.85 23.365 1 115.99 ? HO4 PEG 204 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#