data_6D9Z
#
_model_server_result.job_id            KbDRpt1fQARTMNzwgEiX_Q 
_model_server_result.datetime_utc      '2025-04-16 07:24:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":302}' 
#
_entry.id    6D9Z 
#
_exptl.entry_id    6D9Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6D9Z 
_cell.length_a            225.13 
_cell.length_b            225.13 
_cell.length_c            96.62 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D9Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6D9Z 
_atom_sites.fract_transf_matrix[1][1]    0.004442 
_atom_sites.fract_transf_matrix[1][2]    0.002565 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 BOG F 1 301 9 BOG BOG . 
H 2 BOG F 1 302 15 BOG BOG . 
I 2 BOG F 1 303 18 BOG BOG . 
J 2 BOG F 1 304 19 BOG BOG . 
K 2 BOG F 1 305 20 BOG BOG . 
L 2 BOG A 1 301 3 BOG BOG . 
M 2 BOG A 1 302 4 BOG BOG . 
N 2 BOG A 1 303 5 BOG BOG . 
O 2 BOG A 1 304 6 BOG BOG . 
P 2 BOG A 1 305 8 BOG BOG . 
Q 2 BOG A 1 306 14 BOG BOG . 
R 2 BOG B 1 301 11 BOG BOG . 
S 2 BOG B 1 302 17 BOG BOG . 
T 2 BOG C 1 301 7 BOG BOG . 
U 2 BOG C 1 302 10 BOG BOG . 
V 2 BOG C 1 303 13 BOG BOG . 
W 2 BOG D 1 301 1 BOG BOG . 
X 2 BOG D 1 302 2 BOG BOG . 
Y 2 BOG E 1 301 12 BOG BOG . 
Z 2 BOG E 1 302 16 BOG BOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . U 2 62.46 36.325 -25.966 1 168.01 ? C1 BOG 302 C 1 
HETATM 2 O O1 BOG . . . U 2 62.842 37.321 -25.101 1 170.16 ? O1 BOG 302 C 1 
HETATM 3 C C2 BOG . . . U 2 63.685 35.759 -26.717 1 165.08 ? C2 BOG 302 C 1 
HETATM 4 O O2 BOG . . . U 2 64.437 36.729 -27.495 1 164.09 ? O2 BOG 302 C 1 
HETATM 5 C C3 BOG . . . U 2 63.254 34.709 -27.662 1 163.16 ? C3 BOG 302 C 1 
HETATM 6 O O3 BOG . . . U 2 64.442 34.06 -28.198 1 161.48 ? O3 BOG 302 C 1 
HETATM 7 C C4 BOG . . . U 2 62.428 33.686 -26.969 1 163.63 ? C4 BOG 302 C 1 
HETATM 8 O O4 BOG . . . U 2 61.85 32.849 -27.954 1 163.83 ? O4 BOG 302 C 1 
HETATM 9 C C5 BOG . . . U 2 61.245 34.27 -26.217 1 164.68 ? C5 BOG 302 C 1 
HETATM 10 O O5 BOG . . . U 2 61.725 35.234 -25.218 1 166.43 ? O5 BOG 302 C 1 
HETATM 11 C C6 BOG . . . U 2 60.374 33.169 -25.668 1 163.79 ? C6 BOG 302 C 1 
HETATM 12 O O6 BOG . . . U 2 61.042 32.104 -25.046 1 162.7 ? O6 BOG 302 C 1 
HETATM 13 C C1' BOG . . . U 2 61.821 37.944 -24.325 1 167.76 ? C1' BOG 302 C 1 
HETATM 14 C C2' BOG . . . U 2 62.46 38.76 -23.161 1 165.75 ? C2' BOG 302 C 1 
HETATM 15 C C3' BOG . . . U 2 63.362 39.898 -23.7 1 164.28 ? C3' BOG 302 C 1 
HETATM 16 C C4' BOG . . . U 2 64.009 40.724 -22.562 1 163.4 ? C4' BOG 302 C 1 
HETATM 17 C C5' BOG . . . U 2 62.969 41.366 -21.62 1 163.83 ? C5' BOG 302 C 1 
HETATM 18 C C6' BOG . . . U 2 62.001 42.283 -22.39 1 164.33 ? C6' BOG 302 C 1 
HETATM 19 C C7' BOG . . . U 2 61.021 42.946 -21.427 1 163.88 ? C7' BOG 302 C 1 
HETATM 20 C C8' BOG . . . U 2 60.032 43.853 -22.162 1 162.35 ? C8' BOG 302 C 1 
HETATM 21 H H1 BOG . . . U 2 61.852 36.703 -26.621 1 201.27 ? H1 BOG 302 C 1 
HETATM 22 H H2 BOG . . . U 2 64.281 35.356 -26.066 1 197.76 ? H2 BOG 302 C 1 
HETATM 23 H HO2 BOG . . . U 2 64.563 37.429 -27.029 1 196.57 ? HO2 BOG 302 C 1 
HETATM 24 H H3 BOG . . . U 2 62.741 35.109 -28.382 1 195.45 ? H3 BOG 302 C 1 
HETATM 25 H HO3 BOG . . . U 2 64.777 34.544 -28.811 1 193.44 ? HO3 BOG 302 C 1 
HETATM 26 H H4 BOG . . . U 2 62.981 33.164 -26.366 1 196.02 ? H4 BOG 302 C 1 
HETATM 27 H HO4 BOG . . . U 2 62.464 32.422 -28.359 1 196.26 ? HO4 BOG 302 C 1 
HETATM 28 H H5 BOG . . . U 2 60.715 34.767 -26.86 1 197.28 ? H5 BOG 302 C 1 
HETATM 29 H H61 BOG . . . U 2 59.765 33.561 -25.022 1 196.21 ? H61 BOG 302 C 1 
HETATM 30 H H62 BOG . . . U 2 59.849 32.809 -26.4 1 196.21 ? H62 BOG 302 C 1 
HETATM 31 H HO6 BOG . . . U 2 60.58 31.825 -24.39 1 194.91 ? HO6 BOG 302 C 1 
HETATM 32 H "H1'1" BOG . . . U 2 61.235 37.264 -23.958 1 200.98 ? "H1'1" BOG 302 C 1 
HETATM 33 H "H1'2" BOG . . . U 2 61.306 38.541 -24.891 1 200.98 ? "H1'2" BOG 302 C 1 
HETATM 34 H "H2'1" BOG . . . U 2 62.994 38.164 -22.612 1 198.56 ? "H2'1" BOG 302 C 1 
HETATM 35 H "H2'2" BOG . . . U 2 61.754 39.145 -22.618 1 198.56 ? "H2'2" BOG 302 C 1 
HETATM 36 H "H3'1" BOG . . . U 2 62.827 40.49 -24.252 1 196.8 ? "H3'1" BOG 302 C 1 
HETATM 37 H "H3'2" BOG . . . U 2 64.065 39.511 -24.245 1 196.8 ? "H3'2" BOG 302 C 1 
HETATM 38 H "H4'1" BOG . . . U 2 64.55 41.427 -22.955 1 195.75 ? "H4'1" BOG 302 C 1 
HETATM 39 H "H4'2" BOG . . . U 2 64.584 40.142 -22.041 1 195.75 ? "H4'2" BOG 302 C 1 
HETATM 40 H "H5'1" BOG . . . U 2 63.432 41.888 -20.946 1 196.26 ? "H5'1" BOG 302 C 1 
HETATM 41 H "H5'2" BOG . . . U 2 62.461 40.665 -21.184 1 196.26 ? "H5'2" BOG 302 C 1 
HETATM 42 H "H6'1" BOG . . . U 2 62.509 42.968 -22.853 1 196.86 ? "H6'1" BOG 302 C 1 
HETATM 43 H "H6'2" BOG . . . U 2 61.508 41.756 -23.038 1 196.86 ? "H6'2" BOG 302 C 1 
HETATM 44 H "H7'1" BOG . . . U 2 60.527 42.258 -20.955 1 196.32 ? "H7'1" BOG 302 C 1 
HETATM 45 H "H7'2" BOG . . . U 2 61.518 43.476 -20.785 1 196.32 ? "H7'2" BOG 302 C 1 
HETATM 46 H "H8'1" BOG . . . U 2 60.519 44.475 -22.724 1 194.49 ? "H8'1" BOG 302 C 1 
HETATM 47 H "H8'2" BOG . . . U 2 59.504 44.347 -21.516 1 194.49 ? "H8'2" BOG 302 C 1 
HETATM 48 H "H8'3" BOG . . . U 2 59.445 43.312 -22.713 1 194.49 ? "H8'3" BOG 302 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#