data_6DA2 # _model_server_result.job_id qDyJtOhnmWjlB0U_nPFrOw _model_server_result.datetime_utc '2024-11-26 05:45:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6da2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6DA2 # _exptl.entry_id 6DA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DA2 _cell.length_a 76.558 _cell.length_b 101.62 _cell.length_c 127.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N26 G0D . A G0D 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 215 n n CHA C4D HEM doub 216 n n CHA HHA HEM sing 217 n n CHB C4A HEM sing 218 n n CHB C1B HEM doub 219 n n CHB HHB HEM sing 220 n n CHC C4B HEM sing 221 n n CHC C1C HEM doub 222 n n CHC HHC HEM sing 223 n n CHD C4C HEM doub 224 n n CHD C1D HEM sing 225 n n CHD HHD HEM sing 226 n n C1A C2A HEM doub 227 n y C1A NA HEM sing 228 n y C2A C3A HEM sing 229 n y C2A CAA HEM sing 230 n n C3A C4A HEM doub 231 n y C3A CMA HEM sing 232 n n C4A NA HEM sing 233 n y CMA HMA HEM sing 234 n n CMA HMAA HEM sing 235 n n CMA HMAB HEM sing 236 n n CAA CBA HEM sing 237 n n CAA HAA HEM sing 238 n n CAA HAAA HEM sing 239 n n CBA CGA HEM sing 240 n n CBA HBA HEM sing 241 n n CBA HBAA HEM sing 242 n n CGA O1A HEM doub 243 n n CGA O2A HEM sing 244 n n C1B C2B HEM sing 245 n n C1B NB HEM sing 246 n n C2B C3B HEM doub 247 n n C2B CMB HEM sing 248 n n C3B C4B HEM sing 249 n n C3B CAB HEM sing 250 n n C4B NB HEM doub 251 n n CMB HMB HEM sing 252 n n CMB HMBA HEM sing 253 n n CMB HMBB HEM sing 254 n n CAB CBB HEM doub 255 n n CAB HAB HEM sing 256 n n CBB HBB HEM sing 257 n n CBB HBBA HEM sing 258 n n C1C C2C HEM sing 259 n y C1C NC HEM sing 260 n y C2C C3C HEM doub 261 n y C2C CMC HEM sing 262 n n C3C C4C HEM sing 263 n y C3C CAC HEM sing 264 n n C4C NC HEM sing 265 n y CMC HMC HEM sing 266 n n CMC HMCA HEM sing 267 n n CMC HMCB HEM sing 268 n n CAC CBC HEM doub 269 n n CAC HAC HEM sing 270 n n CBC HBC HEM sing 271 n n CBC HBCA HEM sing 272 n n C1D C2D HEM sing 273 n n C1D ND HEM doub 274 n n C2D C3D HEM doub 275 n n C2D CMD HEM sing 276 n n C3D C4D HEM sing 277 n n C3D CAD HEM sing 278 n n C4D ND HEM sing 279 n n CMD HMD HEM sing 280 n n CMD HMDA HEM sing 281 n n CMD HMDB HEM sing 282 n n CAD CBD HEM sing 283 n n CAD HAD HEM sing 284 n n CAD HADA HEM sing 285 n n CBD CGD HEM sing 286 n n CBD HBD HEM sing 287 n n CBD HBDA HEM sing 288 n n CGD O1D HEM doub 289 n n CGD O2D HEM sing 290 n n O2A H2A HEM sing 291 n n O2D H2D HEM sing 292 n n FE NA HEM sing 293 n n FE NB HEM sing 294 n n FE NC HEM sing 295 n n FE ND HEM sing 296 n n # _atom_sites.entry_id 6DA2 _atom_sites.fract_transf_matrix[1][1] 0.013062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 605 GOL GOL . D 4 G0D A 1 603 700 G0D 282 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.143 -19.905 -9.386 1 62.77 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -15.817 -22.48 -13.366 1 68.75 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.434 -26.276 -10.448 1 60.69 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.411 -23.751 -6.439 1 54.37 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.304 -20.279 -10.706 1 66.43 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.207 -19.367 -11.837 1 68.7 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.386 -20.08 -12.936 1 73.57 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.617 -21.438 -12.531 1 58.85 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.39 -19.589 -14.377 1 46.98 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -14.941 -17.865 -11.747 1 52.93 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.485 -17.696 -12.165 1 61.8 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.127 -16.227 -12.285 1 71.07 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -12.006 -15.966 -12.801 1 60.74 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -13.958 -15.349 -11.885 1 52.87 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -16.025 -23.748 -12.9 1 62.37 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.308 -24.898 -13.74 1 70.41 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.517 -25.927 -12.933 1 66.56 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.321 -25.462 -11.566 1 71.41 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.381 -24.814 -15.279 1 67.73 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -16.83 -27.399 -13.229 1 56.37 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.486 -27.975 -14.361 1 67.53 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.15 -25.939 -9.146 1 65.45 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -16.062 -26.893 -8.065 1 77.46 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.782 -26.232 -6.951 1 67.35 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.682 -24.815 -7.281 1 61.07 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.24 -28.408 -8.152 1 51.47 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.618 -26.97 -5.616 1 58.88 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.125 -26.402 -4.539 1 69.38 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.288 -22.44 -6.9 1 69.17 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.072 -21.259 -6.091 1 67.11 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -14.988 -20.215 -6.902 1 74.23 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.154 -20.711 -8.267 1 55.98 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -14.963 -21.227 -4.569 1 64.4 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.756 -18.726 -6.488 1 63.64 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.262 -18.485 -6.33 1 60.78 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -12.911 -17.178 -5.638 1 83.98 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -11.99 -17.164 -4.772 1 72.52 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -13.538 -16.141 -5.949 1 80.59 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.567 -21.542 -11.182 1 57.23 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -16.024 -24.106 -11.577 1 66.45 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -15.924 -24.666 -8.634 1 66.46 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.329 -22.057 -8.226 1 70.1 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.641 -23.143 -9.922 1 63.08 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #