data_6DA2
#
_model_server_result.job_id            4EVyQ_ycez92DOZDHOeIbQ 
_model_server_result.datetime_utc      '2024-11-05 14:45:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6da2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6DA2 
#
_exptl.entry_id    6DA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.672 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DA2 
_cell.length_a            76.558 
_cell.length_b            101.62 
_cell.length_c            127.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N26 G0D . A G0D 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
#
_chem_comp.formula           'C29 H35 N3 O3 S' 
_chem_comp.formula_weight    505.672 
_chem_comp.id                G0D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C04 C02 G0D sing 83 n n 
C33 C32 G0D doub 84 n y 
C33 C34 G0D sing 85 n y 
C02 C01 G0D sing 86 n n 
C02 O05 G0D sing 87 n n 
C02 C03 G0D sing 88 n n 
C32 C31 G0D sing 89 n y 
O05 C06 G0D sing 90 n n 
C27 C28 G0D doub 91 n y 
C27 N26 G0D sing 92 n y 
C28 C29 G0D sing 93 n y 
C34 C35 G0D doub 94 n y 
N26 C25 G0D doub 95 n y 
N08 C06 G0D sing 96 n n 
N08 C09 G0D sing 97 n n 
C06 O07 G0D doub 98 n n 
C31 C30 G0D sing 99 n n 
C31 C36 G0D doub 100 n y 
C29 C24 G0D doub 101 n y 
C30 C09 G0D sing 102 n n 
C35 C36 G0D sing 103 n y 
C09 C10 G0D sing 104 n n 
C25 C24 G0D sing 105 n y 
C24 C23 G0D sing 106 n n 
C10 S11 G0D sing 107 n n 
C23 N22 G0D sing 108 n n 
N22 C20 G0D sing 109 n n 
S11 C12 G0D sing 110 n n 
C20 C12 G0D sing 111 n n 
C20 O21 G0D doub 112 n n 
C12 C13 G0D sing 113 n n 
C18 C19 G0D doub 114 n y 
C18 C17 G0D sing 115 n y 
C19 C14 G0D sing 116 n y 
C17 C16 G0D doub 117 n y 
C14 C13 G0D sing 118 n n 
C14 C15 G0D doub 119 n y 
C16 C15 G0D sing 120 n y 
C10 H1 G0D sing 121 n n 
C10 H2 G0D sing 122 n n 
C12 H3 G0D sing 123 n n 
C13 H4 G0D sing 124 n n 
C13 H5 G0D sing 125 n n 
C15 H6 G0D sing 126 n n 
C16 H7 G0D sing 127 n n 
C17 H8 G0D sing 128 n n 
C18 H9 G0D sing 129 n n 
C19 H10 G0D sing 130 n n 
C23 H11 G0D sing 131 n n 
C23 H12 G0D sing 132 n n 
C25 H13 G0D sing 133 n n 
C01 H14 G0D sing 134 n n 
C01 H15 G0D sing 135 n n 
C01 H16 G0D sing 136 n n 
C03 H17 G0D sing 137 n n 
C03 H18 G0D sing 138 n n 
C03 H19 G0D sing 139 n n 
C04 H20 G0D sing 140 n n 
C04 H21 G0D sing 141 n n 
C04 H22 G0D sing 142 n n 
C09 H23 G0D sing 143 n n 
C27 H24 G0D sing 144 n n 
C28 H25 G0D sing 145 n n 
C29 H26 G0D sing 146 n n 
C30 H27 G0D sing 147 n n 
C30 H28 G0D sing 148 n n 
C32 H29 G0D sing 149 n n 
C33 H30 G0D sing 150 n n 
C34 H31 G0D sing 151 n n 
C35 H32 G0D sing 152 n n 
C36 H33 G0D sing 153 n n 
N08 H34 G0D sing 154 n n 
N22 H35 G0D sing 155 n n 
#
_atom_sites.entry_id                     6DA2 
_atom_sites.fract_transf_matrix[1][1]    0.013062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 GOL A 1 602 605 GOL GOL . 
D 4 G0D A 1 603 700 G0D 282 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 G0D . . . D 4 -20.801 -15.364 -6.34 1 156.52 ? C10 G0D 603 A 1 
HETATM 2 C C12 G0D . . . D 4 -18.737 -17.494 -7.473 1 126.35 ? C12 G0D 603 A 1 
HETATM 3 C C13 G0D . . . D 4 -18.233 -17.7 -8.971 1 88.83 ? C13 G0D 603 A 1 
HETATM 4 C C14 G0D . . . D 4 -19.2 -18.026 -10.042 1 88.59 ? C14 G0D 603 A 1 
HETATM 5 C C15 G0D . . . D 4 -18.918 -18.952 -11.069 1 98.61 ? C15 G0D 603 A 1 
HETATM 6 C C16 G0D . . . D 4 -19.845 -19.252 -12.08 1 113.61 ? C16 G0D 603 A 1 
HETATM 7 C C17 G0D . . . D 4 -21.09 -18.625 -12.095 1 123.47 ? C17 G0D 603 A 1 
HETATM 8 C C18 G0D . . . D 4 -21.379 -17.706 -11.09 1 122.99 ? C18 G0D 603 A 1 
HETATM 9 C C19 G0D . . . D 4 -20.444 -17.414 -10.086 1 107.25 ? C19 G0D 603 A 1 
HETATM 10 C C20 G0D . . . D 4 -19.84 -18.567 -6.947 1 124.82 ? C20 G0D 603 A 1 
HETATM 11 C C23 G0D . . . D 4 -20.45 -21.111 -7.156 1 87.2 ? C23 G0D 603 A 1 
HETATM 12 C C24 G0D . . . D 4 -19.881 -21.796 -8.318 1 78.1 ? C24 G0D 603 A 1 
HETATM 13 C C25 G0D . . . D 4 -18.534 -22.013 -8.331 1 72.55 ? C25 G0D 603 A 1 
HETATM 14 N N26 G0D . . . D 4 -17.874 -22.559 -9.359 1 71.66 ? N26 G0D 603 A 1 
HETATM 15 C C01 G0D . . . D 4 -24.031 -12.879 -11.999 1 127.75 ? C01 G0D 603 A 1 
HETATM 16 C C02 G0D . . . D 4 -23.92 -12.061 -10.67 1 132.37 ? C02 G0D 603 A 1 
HETATM 17 C C03 G0D . . . D 4 -23.163 -10.795 -11.075 1 132.13 ? C03 G0D 603 A 1 
HETATM 18 C C04 G0D . . . D 4 -25.317 -11.628 -10.085 1 90.58 ? C04 G0D 603 A 1 
HETATM 19 C C06 G0D . . . D 4 -22.923 -14.099 -9.29 1 176.41 ? C06 G0D 603 A 1 
HETATM 20 C C09 G0D . . . D 4 -21.943 -15.639 -7.353 1 159.11 ? C09 G0D 603 A 1 
HETATM 21 C C27 G0D . . . D 4 -18.558 -22.877 -10.475 1 77.59 ? C27 G0D 603 A 1 
HETATM 22 C C28 G0D . . . D 4 -19.911 -22.657 -10.589 1 83.65 ? C28 G0D 603 A 1 
HETATM 23 C C29 G0D . . . D 4 -20.531 -22.093 -9.493 1 87.4 ? C29 G0D 603 A 1 
HETATM 24 C C30 G0D . . . D 4 -23.307 -16.046 -6.6 1 150.95 ? C30 G0D 603 A 1 
HETATM 25 C C31 G0D . . . D 4 -23.585 -17.561 -6.359 1 142.31 ? C31 G0D 603 A 1 
HETATM 26 C C32 G0D . . . D 4 -24.01 -18.425 -7.402 1 143.48 ? C32 G0D 603 A 1 
HETATM 27 C C33 G0D . . . D 4 -24.268 -19.795 -7.205 1 130.48 ? C33 G0D 603 A 1 
HETATM 28 C C34 G0D . . . D 4 -24.102 -20.358 -5.941 1 117.87 ? C34 G0D 603 A 1 
HETATM 29 C C35 G0D . . . D 4 -23.679 -19.538 -4.89 1 117.88 ? C35 G0D 603 A 1 
HETATM 30 C C36 G0D . . . D 4 -23.43 -18.171 -5.088 1 123.02 ? C36 G0D 603 A 1 
HETATM 31 N N08 G0D . . . D 4 -21.993 -14.436 -8.241 1 168.71 ? N08 G0D 603 A 1 
HETATM 32 N N22 G0D . . . D 4 -19.703 -19.876 -7.378 1 101.1 ? N22 G0D 603 A 1 
HETATM 33 O O05 G0D . . . D 4 -23.145 -12.692 -9.531 1 163.87 ? O05 G0D 603 A 1 
HETATM 34 O O07 G0D . . . D 4 -23.474 -14.98 -9.927 1 184.34 ? O07 G0D 603 A 1 
HETATM 35 O O21 G0D . . . D 4 -20.717 -18.322 -6.152 1 131.62 ? O21 G0D 603 A 1 
HETATM 36 S S11 G0D . . . D 4 -19.203 -15.626 -7.196 1 161.23 ? S11 G0D 603 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#