data_6DA3
#
_model_server_result.job_id            5gmxhVdELBNgWCXjDvLxVA 
_model_server_result.datetime_utc      '2024-11-13 08:04:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6da3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6DA3 
#
_exptl.entry_id    6DA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DA3 
_cell.length_a            76.889 
_cell.length_b            102.04 
_cell.length_c            127.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 G0D . A G0D 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 202 n n 
CHA C4D HEM doub 203 n n 
CHA HHA HEM sing 204 n n 
CHB C4A HEM sing 205 n n 
CHB C1B HEM doub 206 n n 
CHB HHB HEM sing 207 n n 
CHC C4B HEM sing 208 n n 
CHC C1C HEM doub 209 n n 
CHC HHC HEM sing 210 n n 
CHD C4C HEM doub 211 n n 
CHD C1D HEM sing 212 n n 
CHD HHD HEM sing 213 n n 
C1A C2A HEM doub 214 n y 
C1A NA HEM sing 215 n y 
C2A C3A HEM sing 216 n y 
C2A CAA HEM sing 217 n n 
C3A C4A HEM doub 218 n y 
C3A CMA HEM sing 219 n n 
C4A NA HEM sing 220 n y 
CMA HMA HEM sing 221 n n 
CMA HMAA HEM sing 222 n n 
CMA HMAB HEM sing 223 n n 
CAA CBA HEM sing 224 n n 
CAA HAA HEM sing 225 n n 
CAA HAAA HEM sing 226 n n 
CBA CGA HEM sing 227 n n 
CBA HBA HEM sing 228 n n 
CBA HBAA HEM sing 229 n n 
CGA O1A HEM doub 230 n n 
CGA O2A HEM sing 231 n n 
C1B C2B HEM sing 232 n n 
C1B NB HEM sing 233 n n 
C2B C3B HEM doub 234 n n 
C2B CMB HEM sing 235 n n 
C3B C4B HEM sing 236 n n 
C3B CAB HEM sing 237 n n 
C4B NB HEM doub 238 n n 
CMB HMB HEM sing 239 n n 
CMB HMBA HEM sing 240 n n 
CMB HMBB HEM sing 241 n n 
CAB CBB HEM doub 242 n n 
CAB HAB HEM sing 243 n n 
CBB HBB HEM sing 244 n n 
CBB HBBA HEM sing 245 n n 
C1C C2C HEM sing 246 n y 
C1C NC HEM sing 247 n y 
C2C C3C HEM doub 248 n y 
C2C CMC HEM sing 249 n n 
C3C C4C HEM sing 250 n y 
C3C CAC HEM sing 251 n n 
C4C NC HEM sing 252 n y 
CMC HMC HEM sing 253 n n 
CMC HMCA HEM sing 254 n n 
CMC HMCB HEM sing 255 n n 
CAC CBC HEM doub 256 n n 
CAC HAC HEM sing 257 n n 
CBC HBC HEM sing 258 n n 
CBC HBCA HEM sing 259 n n 
C1D C2D HEM sing 260 n n 
C1D ND HEM doub 261 n n 
C2D C3D HEM doub 262 n n 
C2D CMD HEM sing 263 n n 
C3D C4D HEM sing 264 n n 
C3D CAD HEM sing 265 n n 
C4D ND HEM sing 266 n n 
CMD HMD HEM sing 267 n n 
CMD HMDA HEM sing 268 n n 
CMD HMDB HEM sing 269 n n 
CAD CBD HEM sing 270 n n 
CAD HAD HEM sing 271 n n 
CAD HADA HEM sing 272 n n 
CBD CGD HEM sing 273 n n 
CBD HBD HEM sing 274 n n 
CBD HBDA HEM sing 275 n n 
CGD O1D HEM doub 276 n n 
CGD O2D HEM sing 277 n n 
O2A H2A HEM sing 278 n n 
O2D H2D HEM sing 279 n n 
FE NA HEM sing 280 n n 
FE NB HEM sing 281 n n 
FE NC HEM sing 282 n n 
FE ND HEM sing 283 n n 
#
_atom_sites.entry_id                     6DA3 
_atom_sites.fract_transf_matrix[1][1]    0.013006 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 G0D A 1 602 700 G0D 287 . 
D 4 HOH A 1 701 7 HOH HOH . 
D 4 HOH A 2 702 6 HOH HOH . 
D 4 HOH A 3 703 3 HOH HOH . 
D 4 HOH A 4 704 1 HOH HOH . 
D 4 HOH A 5 705 8 HOH HOH . 
D 4 HOH A 6 706 4 HOH HOH . 
D 4 HOH A 7 707 2 HOH HOH . 
D 4 HOH A 8 708 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.273 -19.809 -9.358 1 67.69 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.853 -22.545 -13.374 1 65.15 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.655 -26.306 -10.407 1 67.01 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.431 -23.719 -6.46 1 59 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.387 -20.196 -10.687 1 76.59 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.308 -19.331 -11.853 1 81.3 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.465 -20.084 -12.95 1 79.07 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.666 -21.455 -12.539 1 76.01 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.453 -19.591 -14.406 1 68.85 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.058 -17.813 -11.833 1 69.71 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.538 -17.669 -11.93 1 77.35 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.185 -16.236 -12.209 1 78.08 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.09 -15.987 -12.776 1 90.98 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.021 -15.371 -11.858 1 67 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.126 -23.837 -12.935 1 72.22 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.377 -25.011 -13.764 1 74.56 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.618 -26.052 -12.945 1 69.47 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.492 -25.569 -11.578 1 66.04 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.353 -24.95 -15.325 1 62.07 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.924 -27.53 -13.312 1 76.06 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.825 -28.064 -14.547 1 74.7 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.336 -25.938 -9.105 1 72.15 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.229 -26.855 -7.969 1 74.97 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.864 -26.173 -6.889 1 75.11 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.738 -24.776 -7.281 1 72.07 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.435 -28.389 -7.921 1 61.56 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.707 -26.949 -5.56 1 64.25 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.144 -26.521 -4.475 1 74.78 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.34 -22.417 -6.9 1 66.31 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.149 -21.286 -6.038 1 73.88 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.115 -20.181 -6.815 1 71.91 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.279 -20.61 -8.214 1 68.25 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.031 -21.445 -4.51 1 65.78 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.903 -18.729 -6.349 1 63.43 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.41 -18.597 -6.081 1 69.26 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.03 -17.264 -5.465 1 78.56 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -12.018 -17.215 -4.715 1 72.73 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -13.713 -16.254 -5.746 1 77.59 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.63 -21.478 -11.155 1 79.01 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.196 -24.221 -11.625 1 70.82 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -16.041 -24.67 -8.637 1 64.17 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.416 -21.969 -8.21 1 75.1 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.733 -23.098 -9.945 1 68.41 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#