data_6DA4 # _model_server_result.job_id ui6sWSLWhGZOQy611xHUvg _model_server_result.datetime_utc '2025-02-10 17:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6da4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6DA4 # _exptl.entry_id 6DA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (Z)-1-{2,2-difluoro-6-[5-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-2,3-dihydro-4H-1,4-benzoxazin-4-yl}methanimine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DA4 _cell.length_a 46.384 _cell.length_b 75.516 _cell.length_c 89.621 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 909 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C13 _struct_conn.ptnr2_label_comp_id G4V _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G4V _struct_conn.ptnr2_auth_seq_id 1201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.745 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H17 F2 N5 O2' _chem_comp.formula_weight 373.357 _chem_comp.id G4V _chem_comp.mon_nstd_flag . _chem_comp.name (Z)-1-{2,2-difluoro-6-[5-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-2,3-dihydro-4H-1,4-benzoxazin-4-yl}methanimine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C5 G4V doub 83 n y N2 C12 G4V sing 84 n y C5 N1 G4V sing 85 n y N1 C11 G4V doub 86 n y C12 N3 G4V sing 87 n y C12 C6 G4V doub 88 n y N3 C4 G4V sing 89 n y C1 C2 G4V doub 90 n y C1 C7 G4V sing 91 n y C11 C6 G4V sing 92 n y C11 C7 G4V sing 93 n n C6 C8 G4V sing 94 n y C2 C10 G4V sing 95 n y C4 C8 G4V doub 96 n y C7 C3 G4V doub 97 n y C8 C17 G4V sing 98 n n C10 O1 G4V sing 99 n n C10 C9 G4V doub 100 n y C3 C9 G4V sing 101 n y C17 C18 G4V sing 102 n n O1 C15 G4V sing 103 n n C9 N4 G4V sing 104 n n F2 C15 G4V sing 105 n n C14 N4 G4V sing 106 n n C14 C15 G4V sing 107 n n N4 C13 G4V sing 108 n n C15 F1 G4V sing 109 n n N C13 G4V doub 110 n n C18 O2 G4V sing 111 n n O2 C16 G4V sing 112 n n N3 H1 G4V sing 113 n n C4 H2 G4V sing 114 n n C13 H3 G4V sing 115 n n C18 H4 G4V sing 116 n n C18 H5 G4V sing 117 n n C16 H6 G4V sing 118 n n C16 H7 G4V sing 119 n n C16 H8 G4V sing 120 n n C17 H9 G4V sing 121 n n C17 H10 G4V sing 122 n n C2 H11 G4V sing 123 n n C5 H12 G4V sing 124 n n C1 H13 G4V sing 125 n n N H14 G4V sing 126 n n C14 H15 G4V sing 127 n n C14 H16 G4V sing 128 n n C3 H17 G4V sing 129 n n # _atom_sites.entry_id 6DA4 _atom_sites.fract_transf_matrix[1][1] 0.021559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G4V A 1 1201 1 G4V PFE . C 3 HOH A 1 1301 13 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 52 HOH HOH . C 3 HOH A 4 1304 5 HOH HOH . C 3 HOH A 5 1305 1 HOH HOH . C 3 HOH A 6 1306 60 HOH HOH . C 3 HOH A 7 1307 45 HOH HOH . C 3 HOH A 8 1308 37 HOH HOH . C 3 HOH A 9 1309 34 HOH HOH . C 3 HOH A 10 1310 8 HOH HOH . C 3 HOH A 11 1311 43 HOH HOH . C 3 HOH A 12 1312 11 HOH HOH . C 3 HOH A 13 1313 68 HOH HOH . C 3 HOH A 14 1314 70 HOH HOH . C 3 HOH A 15 1315 36 HOH HOH . C 3 HOH A 16 1316 50 HOH HOH . C 3 HOH A 17 1317 65 HOH HOH . C 3 HOH A 18 1318 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 G4V . . . B 2 -1.808 12.163 3.829 1 39.7 ? N3 G4V 1201 A 1 HETATM 2 C C4 G4V . . . B 2 -0.556 11.993 4.352 1 38.71 ? C4 G4V 1201 A 1 HETATM 3 N N2 G4V . . . B 2 -3.206 14.042 3.231 1 43.98 ? N2 G4V 1201 A 1 HETATM 4 C C7 G4V . . . B 2 0.027 16.55 4.408 1 50.85 ? C7 G4V 1201 A 1 HETATM 5 C C6 G4V . . . B 2 -0.944 14.193 4.198 1 43.6 ? C6 G4V 1201 A 1 HETATM 6 C C9 G4V . . . B 2 0.846 18.591 5.413 1 56.93 ? C9 G4V 1201 A 1 HETATM 7 C C13 G4V . . . B 2 -0.59 20.268 6.697 1 58.87 ? C13 G4V 1201 A 1 HETATM 8 C C8 G4V . . . B 2 0.02 13.201 4.611 1 39.68 ? C8 G4V 1201 A 1 HETATM 9 C C18 G4V . . . B 2 1.444 14.289 6.48 1 40.4 ? C18 G4V 1201 A 1 HETATM 10 C C16 G4V . . . B 2 2.969 15.711 7.645 1 39.52 ? C16 G4V 1201 A 1 HETATM 11 C C17 G4V . . . B 2 1.37 13.43 5.234 1 39.39 ? C17 G4V 1201 A 1 HETATM 12 C C2 G4V . . . B 2 2.359 17.162 4.199 1 56.52 ? C2 G4V 1201 A 1 HETATM 13 C C10 G4V . . . B 2 2.135 18.298 4.96 1 58.08 ? C10 G4V 1201 A 1 HETATM 14 F F2 G4V . . . B 2 4.092 21.048 5.495 1 57.32 ? F2 G4V 1201 A 1 HETATM 15 C C15 G4V . . . B 2 3.071 20.327 5.97 1 57.95 ? C15 G4V 1201 A 1 HETATM 16 O O1 G4V . . . B 2 3.238 19.063 5.264 1 57.99 ? O1 G4V 1201 A 1 HETATM 17 C C5 G4V . . . B 2 -3.176 15.377 3.237 1 46.5 ? C5 G4V 1201 A 1 HETATM 18 C C1 G4V . . . B 2 1.303 16.32 3.905 1 54.13 ? C1 G4V 1201 A 1 HETATM 19 O O2 G4V . . . B 2 2.762 14.822 6.554 1 41.32 ? O2 G4V 1201 A 1 HETATM 20 N N G4V . . . B 2 -1.412 21.214 6.308 1 60.74 ? N G4V 1201 A 1 HETATM 21 C C14 G4V . . . B 2 1.636 20.887 5.677 1 57.52 ? C14 G4V 1201 A 1 HETATM 22 N N4 G4V . . . B 2 0.579 19.888 5.887 1 58.11 1 N4 G4V 1201 A 1 HETATM 23 C C3 G4V . . . B 2 -0.186 17.69 5.176 1 53.5 ? C3 G4V 1201 A 1 HETATM 24 F F1 G4V . . . B 2 3.212 19.976 7.252 1 59.34 ? F1 G4V 1201 A 1 HETATM 25 N N1 G4V . . . B 2 -2.206 16.186 3.669 1 47.43 ? N1 G4V 1201 A 1 HETATM 26 C C12 G4V . . . B 2 -2.079 13.496 3.718 1 42.51 ? C12 G4V 1201 A 1 HETATM 27 C C11 G4V . . . B 2 -1.084 15.604 4.124 1 47.05 ? C11 G4V 1201 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #