data_6DA5
#
_model_server_result.job_id            pMZDdMkcWd6jE02rrEg_Vw 
_model_server_result.datetime_utc      '2024-11-24 16:38:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6da5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6DA5 
#
_exptl.entry_id    6DA5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DA5 
_cell.length_a            76.359 
_cell.length_b            101.73 
_cell.length_c            125.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 G1J . A G1J 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 202 n n 
CHA C4D HEM doub 203 n n 
CHA HHA HEM sing 204 n n 
CHB C4A HEM sing 205 n n 
CHB C1B HEM doub 206 n n 
CHB HHB HEM sing 207 n n 
CHC C4B HEM sing 208 n n 
CHC C1C HEM doub 209 n n 
CHC HHC HEM sing 210 n n 
CHD C4C HEM doub 211 n n 
CHD C1D HEM sing 212 n n 
CHD HHD HEM sing 213 n n 
C1A C2A HEM doub 214 n y 
C1A NA HEM sing 215 n y 
C2A C3A HEM sing 216 n y 
C2A CAA HEM sing 217 n n 
C3A C4A HEM doub 218 n y 
C3A CMA HEM sing 219 n n 
C4A NA HEM sing 220 n y 
CMA HMA HEM sing 221 n n 
CMA HMAA HEM sing 222 n n 
CMA HMAB HEM sing 223 n n 
CAA CBA HEM sing 224 n n 
CAA HAA HEM sing 225 n n 
CAA HAAA HEM sing 226 n n 
CBA CGA HEM sing 227 n n 
CBA HBA HEM sing 228 n n 
CBA HBAA HEM sing 229 n n 
CGA O1A HEM doub 230 n n 
CGA O2A HEM sing 231 n n 
C1B C2B HEM sing 232 n n 
C1B NB HEM sing 233 n n 
C2B C3B HEM doub 234 n n 
C2B CMB HEM sing 235 n n 
C3B C4B HEM sing 236 n n 
C3B CAB HEM sing 237 n n 
C4B NB HEM doub 238 n n 
CMB HMB HEM sing 239 n n 
CMB HMBA HEM sing 240 n n 
CMB HMBB HEM sing 241 n n 
CAB CBB HEM doub 242 n n 
CAB HAB HEM sing 243 n n 
CBB HBB HEM sing 244 n n 
CBB HBBA HEM sing 245 n n 
C1C C2C HEM sing 246 n y 
C1C NC HEM sing 247 n y 
C2C C3C HEM doub 248 n y 
C2C CMC HEM sing 249 n n 
C3C C4C HEM sing 250 n y 
C3C CAC HEM sing 251 n n 
C4C NC HEM sing 252 n y 
CMC HMC HEM sing 253 n n 
CMC HMCA HEM sing 254 n n 
CMC HMCB HEM sing 255 n n 
CAC CBC HEM doub 256 n n 
CAC HAC HEM sing 257 n n 
CBC HBC HEM sing 258 n n 
CBC HBCA HEM sing 259 n n 
C1D C2D HEM sing 260 n n 
C1D ND HEM doub 261 n n 
C2D C3D HEM doub 262 n n 
C2D CMD HEM sing 263 n n 
C3D C4D HEM sing 264 n n 
C3D CAD HEM sing 265 n n 
C4D ND HEM sing 266 n n 
CMD HMD HEM sing 267 n n 
CMD HMDA HEM sing 268 n n 
CMD HMDB HEM sing 269 n n 
CAD CBD HEM sing 270 n n 
CAD HAD HEM sing 271 n n 
CAD HADA HEM sing 272 n n 
CBD CGD HEM sing 273 n n 
CBD HBD HEM sing 274 n n 
CBD HBDA HEM sing 275 n n 
CGD O1D HEM doub 276 n n 
CGD O2D HEM sing 277 n n 
O2A H2A HEM sing 278 n n 
O2D H2D HEM sing 279 n n 
FE NA HEM sing 280 n n 
FE NB HEM sing 281 n n 
FE NC HEM sing 282 n n 
FE ND HEM sing 283 n n 
#
_atom_sites.entry_id                     6DA5 
_atom_sites.fract_transf_matrix[1][1]    0.013096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00983 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 G1J A 1 602 700 G1J 034 . 
D 4 HOH A 1 701 5 HOH HOH . 
D 4 HOH A 2 702 1 HOH HOH . 
D 4 HOH A 3 703 4 HOH HOH . 
D 4 HOH A 4 704 3 HOH HOH . 
D 4 HOH A 5 705 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.122 -19.938 -9.151 1 65.08 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.714 -22.623 -13.154 1 62.96 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.367 -26.389 -10.13 1 69.83 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.25 -23.824 -6.176 1 54.35 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.242 -20.286 -10.481 1 63.98 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.148 -19.416 -11.643 1 69.09 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.284 -20.167 -12.745 1 65.88 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.522 -21.528 -12.324 1 66.47 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.246 -19.689 -14.229 1 54.58 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -14.861 -17.9 -11.643 1 67.5 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.35 -17.8 -11.906 1 68.54 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -12.887 -16.382 -11.981 1 63.26 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -11.713 -16.099 -12.359 1 64.18 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -13.71 -15.542 -11.603 1 58.74 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -15.91 -23.909 -12.652 1 58.92 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.094 -25.092 -13.431 1 67.33 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.289 -26.138 -12.611 1 73.5 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.206 -25.643 -11.268 1 63.42 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.05 -25.03 -14.979 1 63.65 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.534 -27.639 -12.934 1 78.24 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.566 -28.151 -14.169 1 75.25 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.075 -26.038 -8.829 1 69.53 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.016 -26.959 -7.72 1 66.78 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.709 -26.305 -6.619 1 66.19 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.547 -24.903 -6.976 1 67.51 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.271 -28.476 -7.821 1 70.26 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.599 -27.073 -5.28 1 66.38 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.359 -26.553 -4.101 1 70.89 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.164 -22.523 -6.656 1 66.55 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -14.986 -21.348 -5.84 1 67.69 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.949 -20.27 -6.651 1 67.35 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.102 -20.727 -8.017 1 63.42 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.866 -21.422 -4.298 1 70.63 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.738 -18.788 -6.259 1 63.08 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.289 -18.666 -5.751 1 62.42 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.985 -17.266 -5.244 1 65.84 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -12.053 -17.1 -4.434 1 63.78 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -13.662 -16.295 -5.654 1 62.91 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.451 -21.561 -10.946 1 61.17 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.002 -24.273 -11.32 1 56.3 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.8 -24.79 -8.334 1 60.31 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.221 -22.097 -7.969 1 71.05 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.523 -23.154 -9.63 1 60.15 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#