data_6DA5 # _model_server_result.job_id VS2--Pugv13D9BtATJQCvg _model_server_result.datetime_utc '2024-11-28 09:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6da5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6DA5 # _exptl.entry_id 6DA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.672 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DA5 _cell.length_a 76.359 _cell.length_b 101.73 _cell.length_c 125.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 G1J . A G1J 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C29 H35 N3 O3 S' _chem_comp.formula_weight 505.672 _chem_comp.id G1J _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C02 G1J sing 83 n n C35 C36 G1J doub 84 n y C35 C34 G1J sing 85 n y C36 C31 G1J sing 86 n y C34 C33 G1J doub 87 n y C03 C02 G1J sing 88 n n C02 C01 G1J sing 89 n n C02 O05 G1J sing 90 n n C27 C28 G1J doub 91 n y C27 N26 G1J sing 92 n y C28 C29 G1J sing 93 n y O05 C06 G1J sing 94 n n C31 C32 G1J doub 95 n y C31 C30 G1J sing 96 n n C33 C32 G1J sing 97 n y N26 C25 G1J doub 98 n y C29 C24 G1J doub 99 n y N08 C06 G1J sing 100 n n N08 C09 G1J sing 101 n n C30 C09 G1J sing 102 n n C06 O07 G1J doub 103 n n C09 C10 G1J sing 104 n n C25 C24 G1J sing 105 n y C24 C23 G1J sing 106 n n C10 S11 G1J sing 107 n n C23 N22 G1J sing 108 n n N22 C20 G1J sing 109 n n S11 C12 G1J sing 110 n n C19 C18 G1J doub 111 n y C19 C14 G1J sing 112 n y C18 C17 G1J sing 113 n y C20 O21 G1J doub 114 n n C20 C12 G1J sing 115 n n C13 C14 G1J sing 116 n n C13 C12 G1J sing 117 n n C14 C15 G1J doub 118 n y C17 C16 G1J doub 119 n y C15 C16 G1J sing 120 n y C12 H1 G1J sing 121 n n C13 H2 G1J sing 122 n n C13 H3 G1J sing 123 n n C15 H4 G1J sing 124 n n C16 H5 G1J sing 125 n n C17 H6 G1J sing 126 n n C18 H7 G1J sing 127 n n C19 H8 G1J sing 128 n n C23 H9 G1J sing 129 n n C23 H10 G1J sing 130 n n C25 H11 G1J sing 131 n n C29 H12 G1J sing 132 n n C30 H13 G1J sing 133 n n C30 H14 G1J sing 134 n n C32 H15 G1J sing 135 n n C33 H16 G1J sing 136 n n C34 H17 G1J sing 137 n n C35 H18 G1J sing 138 n n C01 H19 G1J sing 139 n n C01 H20 G1J sing 140 n n C01 H21 G1J sing 141 n n C03 H22 G1J sing 142 n n C03 H23 G1J sing 143 n n C03 H24 G1J sing 144 n n C04 H25 G1J sing 145 n n C04 H26 G1J sing 146 n n C04 H27 G1J sing 147 n n C09 H28 G1J sing 148 n n C10 H29 G1J sing 149 n n C10 H30 G1J sing 150 n n C27 H31 G1J sing 151 n n C28 H32 G1J sing 152 n n C36 H33 G1J sing 153 n n N08 H34 G1J sing 154 n n N22 H35 G1J sing 155 n n # _atom_sites.entry_id 6DA5 _atom_sites.fract_transf_matrix[1][1] 0.013096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 G1J A 1 602 700 G1J 034 . D 4 HOH A 1 701 5 HOH HOH . D 4 HOH A 2 702 1 HOH HOH . D 4 HOH A 3 703 4 HOH HOH . D 4 HOH A 4 704 3 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 G1J . . . C 3 -21.763 -18.705 -4.896 1 104.87 ? C12 G1J 602 A 1 HETATM 2 C C13 G1J . . . C 3 -23.372 -18.679 -5.122 1 105.12 ? C13 G1J 602 A 1 HETATM 3 C C14 G1J . . . C 3 -24.333 -19.861 -4.994 1 120.36 ? C14 G1J 602 A 1 HETATM 4 C C15 G1J . . . C 3 -24.378 -20.786 -3.931 1 129.8 ? C15 G1J 602 A 1 HETATM 5 C C16 G1J . . . C 3 -25.342 -21.821 -3.905 1 142.4 ? C16 G1J 602 A 1 HETATM 6 C C17 G1J . . . C 3 -26.3 -21.949 -4.917 1 151.97 ? C17 G1J 602 A 1 HETATM 7 C C18 G1J . . . C 3 -26.271 -21.026 -5.949 1 146 ? C18 G1J 602 A 1 HETATM 8 C C19 G1J . . . C 3 -25.319 -20.011 -5.964 1 132.79 ? C19 G1J 602 A 1 HETATM 9 C C20 G1J . . . C 3 -20.874 -19.942 -5.38 1 96.8 ? C20 G1J 602 A 1 HETATM 10 C C23 G1J . . . C 3 -20.322 -22.001 -6.602 1 77.31 ? C23 G1J 602 A 1 HETATM 11 C C24 G1J . . . C 3 -19.7 -22.28 -7.972 1 68.1 ? C24 G1J 602 A 1 HETATM 12 C C25 G1J . . . C 3 -18.312 -22.441 -8.083 1 70.25 ? C25 G1J 602 A 1 HETATM 13 C C29 G1J . . . C 3 -20.408 -22.433 -9.138 1 63.71 ? C29 G1J 602 A 1 HETATM 14 C C30 G1J . . . C 3 -22.032 -18.374 -8.632 1 89.01 ? C30 G1J 602 A 1 HETATM 15 C C32 G1J . . . C 3 -19.593 -17.931 -8.694 1 85.1 ? C32 G1J 602 A 1 HETATM 16 C C33 G1J . . . C 3 -18.397 -17.9 -9.314 1 70.82 ? C33 G1J 602 A 1 HETATM 17 C C34 G1J . . . C 3 -18.333 -18.267 -10.652 1 80.15 ? C34 G1J 602 A 1 HETATM 18 C C35 G1J . . . C 3 -19.485 -18.667 -11.321 1 89.32 ? C35 G1J 602 A 1 HETATM 19 C C01 G1J . . . C 3 -27.631 -14.516 -9.833 1 133.88 ? C01 G1J 602 A 1 HETATM 20 C C02 G1J . . . C 3 -26.589 -15.484 -10.427 1 134.72 ? C02 G1J 602 A 1 HETATM 21 C C03 G1J . . . C 3 -27.157 -16.896 -10.57 1 135.96 ? C03 G1J 602 A 1 HETATM 22 C C04 G1J . . . C 3 -26.196 -14.926 -11.804 1 132.4 ? C04 G1J 602 A 1 HETATM 23 C C06 G1J . . . C 3 -25.192 -16.341 -8.592 1 144.7 ? C06 G1J 602 A 1 HETATM 24 C C09 G1J . . . C 3 -22.802 -17.095 -8.415 1 113.63 ? C09 G1J 602 A 1 HETATM 25 C C10 G1J . . . C 3 -22.761 -16.675 -6.898 1 115.67 ? C10 G1J 602 A 1 HETATM 26 C C27 G1J . . . C 3 -18.38 -22.824 -10.353 1 68.66 ? C27 G1J 602 A 1 HETATM 27 C C28 G1J . . . C 3 -19.792 -22.699 -10.339 1 62.2 ? C28 G1J 602 A 1 HETATM 28 C C31 G1J . . . C 3 -20.776 -18.306 -9.336 1 86.09 ? C31 G1J 602 A 1 HETATM 29 C C36 G1J . . . C 3 -20.688 -18.689 -10.671 1 94.33 ? C36 G1J 602 A 1 HETATM 30 N N08 G1J . . . C 3 -24.167 -17.322 -8.772 1 133.05 ? N08 G1J 602 A 1 HETATM 31 N N22 G1J . . . C 3 -21.358 -20.958 -6.286 1 79.18 ? N22 G1J 602 A 1 HETATM 32 N N26 G1J . . . C 3 -17.652 -22.684 -9.223 1 68.67 ? N26 G1J 602 A 1 HETATM 33 O O05 G1J . . . C 3 -25.366 -15.478 -9.678 1 142.63 ? O05 G1J 602 A 1 HETATM 34 O O07 G1J . . . C 3 -25.851 -16.227 -7.612 1 157.27 ? O07 G1J 602 A 1 HETATM 35 O O21 G1J . . . C 3 -19.736 -20.036 -5.087 1 111.43 ? O21 G1J 602 A 1 HETATM 36 S S11 G1J . . . C 3 -21.283 -17.339 -5.997 1 115.9 ? S11 G1J 602 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #