data_6DA8
#
_model_server_result.job_id            p1EtYGDAFFZefG2_59JPaA 
_model_server_result.datetime_utc      '2024-11-24 16:26:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6da8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6DA8 
#
_exptl.entry_id    6DA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              488.621 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[(pyridin-3-yl)methyl]-D-phenylalaninamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DA8 
_cell.length_a            76.25 
_cell.length_b            101.68 
_cell.length_c            126.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 G0J . A G0J 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C29 H36 N4 O3' 
_chem_comp.formula_weight    488.621 
_chem_comp.id                G0J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[(pyridin-3-yl)methyl]-D-phenylalaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 C02 G0J sing 83 n n 
C32 C33 G0J doub 84 n y 
C32 C31 G0J sing 85 n y 
C30 C31 G0J sing 86 n n 
C30 C09 G0J sing 87 n n 
C33 C34 G0J sing 88 n y 
C27 C26 G0J doub 89 n y 
C27 N28 G0J sing 90 n y 
C31 C36 G0J doub 91 n y 
C26 C25 G0J sing 92 n y 
C02 O05 G0J sing 93 n n 
C02 C01 G0J sing 94 n n 
C02 C04 G0J sing 95 n n 
C09 N08 G0J sing 96 n n 
C09 C10 G0J sing 97 n n 
N28 C29 G0J doub 98 n y 
O05 C06 G0J sing 99 n n 
N08 C06 G0J sing 100 n n 
C34 C35 G0J doub 101 n y 
C36 C35 G0J sing 102 n y 
C06 O07 G0J doub 103 n n 
C25 C24 G0J doub 104 n y 
C10 N11 G0J sing 105 n n 
C29 C24 G0J sing 106 n y 
C24 C23 G0J sing 107 n n 
N11 C12 G0J sing 108 n n 
C23 N22 G0J sing 109 n n 
N22 C20 G0J sing 110 n n 
C12 C20 G0J sing 111 n n 
C12 C13 G0J sing 112 n n 
C18 C19 G0J doub 113 n y 
C18 C17 G0J sing 114 n y 
C19 C14 G0J sing 115 n y 
C20 O21 G0J doub 116 n n 
C17 C16 G0J doub 117 n y 
C14 C13 G0J sing 118 n n 
C14 C15 G0J doub 119 n y 
C16 C15 G0J sing 120 n y 
C16 H1 G0J sing 121 n n 
C18 H2 G0J sing 122 n n 
C15 H3 G0J sing 123 n n 
C23 H4 G0J sing 124 n n 
C23 H5 G0J sing 125 n n 
C13 H6 G0J sing 126 n n 
C13 H7 G0J sing 127 n n 
C12 H8 G0J sing 128 n n 
C10 H9 G0J sing 129 n n 
C10 H10 G0J sing 130 n n 
C17 H11 G0J sing 131 n n 
C25 H12 G0J sing 132 n n 
C27 H13 G0J sing 133 n n 
C01 H14 G0J sing 134 n n 
C01 H15 G0J sing 135 n n 
C01 H16 G0J sing 136 n n 
C03 H17 G0J sing 137 n n 
C03 H18 G0J sing 138 n n 
C03 H19 G0J sing 139 n n 
C04 H20 G0J sing 140 n n 
C04 H21 G0J sing 141 n n 
C04 H22 G0J sing 142 n n 
C09 H23 G0J sing 143 n n 
C19 H24 G0J sing 144 n n 
C26 H25 G0J sing 145 n n 
C29 H26 G0J sing 146 n n 
C30 H27 G0J sing 147 n n 
C30 H28 G0J sing 148 n n 
C32 H29 G0J sing 149 n n 
C33 H30 G0J sing 150 n n 
C34 H31 G0J sing 151 n n 
C35 H32 G0J sing 152 n n 
C36 H33 G0J sing 153 n n 
N08 H34 G0J sing 154 n n 
N11 H35 G0J sing 155 n n 
N22 H37 G0J sing 156 n n 
#
_atom_sites.entry_id                     6DA8 
_atom_sites.fract_transf_matrix[1][1]    0.013115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 G0J A 1 602 700 G0J 187 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 G0J . . . C 3 -17.015 -30.977 -6.014 1 128.08 ? C20 G0J 602 A 1 
HETATM 2 C C14 G0J . . . C 3 -13.217 -31.461 -4.907 1 147.36 ? C14 G0J 602 A 1 
HETATM 3 C C16 G0J . . . C 3 -11.015 -31.962 -3.941 1 163.06 ? C16 G0J 602 A 1 
HETATM 4 C C18 G0J . . . C 3 -11.118 -31.09 -6.188 1 157.92 ? C18 G0J 602 A 1 
HETATM 5 C C15 G0J . . . C 3 -12.434 -31.92 -3.846 1 157.43 ? C15 G0J 602 A 1 
HETATM 6 C C23 G0J . . . C 3 -18.742 -29.115 -6.356 1 101.26 ? C23 G0J 602 A 1 
HETATM 7 C C13 G0J . . . C 3 -14.739 -31.418 -4.83 1 130.49 ? C13 G0J 602 A 1 
HETATM 8 C C12 G0J . . . C 3 -15.453 -31.173 -6.202 1 125.85 ? C12 G0J 602 A 1 
HETATM 9 C C10 G0J . . . C 3 -14.666 -31.694 -8.593 1 112.37 ? C10 G0J 602 A 1 
HETATM 10 C C17 G0J . . . C 3 -10.341 -31.547 -5.113 1 159.62 ? C17 G0J 602 A 1 
HETATM 11 C C25 G0J . . . C 3 -17.992 -28.954 -8.759 1 69.22 ? C25 G0J 602 A 1 
HETATM 12 C C27 G0J . . . C 3 -19.48 -28.155 -10.481 1 72.23 ? C27 G0J 602 A 1 
HETATM 13 C C01 G0J . . . C 3 -10.044 -36.27 -9.386 1 117.18 ? C01 G0J 602 A 1 
HETATM 14 C C02 G0J . . . C 3 -11.527 -36.274 -9.871 1 131.94 ? C02 G0J 602 A 1 
HETATM 15 C C03 G0J . . . C 3 -11.479 -36.384 -11.396 1 133.11 ? C03 G0J 602 A 1 
HETATM 16 C C04 G0J . . . C 3 -12.202 -37.531 -9.243 1 134.41 ? C04 G0J 602 A 1 
HETATM 17 C C06 G0J . . . C 3 -13.414 -34.808 -8.764 1 134.35 ? C06 G0J 602 A 1 
HETATM 18 C C09 G0J . . . C 3 -14.676 -32.757 -9.855 1 112.18 ? C09 G0J 602 A 1 
HETATM 19 C C19 G0J . . . C 3 -12.534 -31.047 -6.081 1 154.96 ? C19 G0J 602 A 1 
HETATM 20 C C24 G0J . . . C 3 -19.011 -28.771 -7.799 1 76.93 ? C24 G0J 602 A 1 
HETATM 21 C C26 G0J . . . C 3 -18.221 -28.647 -10.118 1 66.25 ? C26 G0J 602 A 1 
HETATM 22 C C29 G0J . . . C 3 -20.208 -28.271 -8.258 1 66 ? C29 G0J 602 A 1 
HETATM 23 C C30 G0J . . . C 3 -15.97 -32.5 -10.782 1 108.1 ? C30 G0J 602 A 1 
HETATM 24 C C31 G0J . . . C 3 -17.418 -32.681 -10.241 1 98.82 ? C31 G0J 602 A 1 
HETATM 25 C C32 G0J . . . C 3 -18.447 -32.924 -11.143 1 91.79 ? C32 G0J 602 A 1 
HETATM 26 C C33 G0J . . . C 3 -19.77 -33.079 -10.709 1 101.11 ? C33 G0J 602 A 1 
HETATM 27 C C34 G0J . . . C 3 -20.115 -33.007 -9.349 1 99.8 ? C34 G0J 602 A 1 
HETATM 28 C C35 G0J . . . C 3 -19.098 -32.763 -8.435 1 99.19 ? C35 G0J 602 A 1 
HETATM 29 C C36 G0J . . . C 3 -17.778 -32.601 -8.885 1 97.9 ? C36 G0J 602 A 1 
HETATM 30 N N08 G0J . . . C 3 -14.595 -34.226 -9.442 1 122.66 ? N08 G0J 602 A 1 
HETATM 31 N N11 G0J . . . C 3 -15.179 -32.241 -7.252 1 119.11 ? N11 G0J 602 A 1 
HETATM 32 N N22 G0J . . . C 3 -17.413 -29.613 -6.338 1 117.6 ? N22 G0J 602 A 1 
HETATM 33 N N28 G0J . . . C 3 -20.418 -27.979 -9.535 1 64.53 ? N28 G0J 602 A 1 
HETATM 34 O O05 G0J . . . C 3 -12.152 -34.913 -9.519 1 140.59 ? O05 G0J 602 A 1 
HETATM 35 O O07 G0J . . . C 3 -13.469 -35.189 -7.613 1 130.27 ? O07 G0J 602 A 1 
HETATM 36 O O21 G0J . . . C 3 -17.766 -31.798 -5.689 1 134.97 ? O21 G0J 602 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#