data_6DA9
#
_model_server_result.job_id            gRsHJB30qxEKsclsQHdAsw 
_model_server_result.datetime_utc      '2024-10-28 02:27:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6da9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6DA9 
#
_exptl.entry_id    6DA9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DA9 
_cell.length_a            52.07 
_cell.length_b            116.109 
_cell.length_c            193.969 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DA9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 180 A ASN 164 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc2 A ND1 HIS 203 A HIS 187 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc3 A OE2 GLU 244 A GLU 228 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 B O1P FMN . A FMN 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc5 C MN MN . A MN 502 1_555 P O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc6 C MN MN . A MN 502 1_555 P O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 183 n n 
C1 C2 GOL sing 184 n n 
C1 H11 GOL sing 185 n n 
C1 H12 GOL sing 186 n n 
O1 HO1 GOL sing 187 n n 
C2 O2 GOL sing 188 n n 
C2 C3 GOL sing 189 n n 
C2 H2 GOL sing 190 n n 
O2 HO2 GOL sing 191 n n 
C3 O3 GOL sing 192 n n 
C3 H31 GOL sing 193 n n 
C3 H32 GOL sing 194 n n 
O3 HO3 GOL sing 195 n n 
#
_atom_sites.entry_id                     6DA9 
_atom_sites.fract_transf_matrix[1][1]    0.019205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008613 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 501 501 FMN FMN . 
C 3 MN A 1 502 502 MN MN . 
D 4 GOL A 1 503 503 GOL GOL . 
E 4 GOL A 1 504 504 GOL GOL . 
F 4 GOL A 1 505 505 GOL GOL . 
G 4 GOL A 1 506 506 GOL GOL . 
H 4 GOL A 1 507 507 GOL GOL . 
I 4 GOL A 1 508 508 GOL GOL . 
J 4 GOL A 1 509 509 GOL GOL . 
K 4 GOL A 1 510 510 GOL GOL . 
L 4 GOL A 1 511 511 GOL GOL . 
M 4 GOL A 1 512 512 GOL GOL . 
N 4 GOL A 1 513 513 GOL GOL . 
O 5 UNL A 1 514 514 UNL UNL . 
P 6 HOH A 1 601 698 HOH HOH . 
P 6 HOH A 2 602 670 HOH HOH . 
P 6 HOH A 3 603 612 HOH HOH . 
P 6 HOH A 4 604 696 HOH HOH . 
P 6 HOH A 5 605 606 HOH HOH . 
P 6 HOH A 6 606 636 HOH HOH . 
P 6 HOH A 7 607 641 HOH HOH . 
P 6 HOH A 8 608 623 HOH HOH . 
P 6 HOH A 9 609 616 HOH HOH . 
P 6 HOH A 10 610 724 HOH HOH . 
P 6 HOH A 11 611 688 HOH HOH . 
P 6 HOH A 12 612 637 HOH HOH . 
P 6 HOH A 13 613 683 HOH HOH . 
P 6 HOH A 14 614 663 HOH HOH . 
P 6 HOH A 15 615 748 HOH HOH . 
P 6 HOH A 16 616 642 HOH HOH . 
P 6 HOH A 17 617 603 HOH HOH . 
P 6 HOH A 18 618 705 HOH HOH . 
P 6 HOH A 19 619 614 HOH HOH . 
P 6 HOH A 20 620 655 HOH HOH . 
P 6 HOH A 21 621 668 HOH HOH . 
P 6 HOH A 22 622 673 HOH HOH . 
P 6 HOH A 23 623 675 HOH HOH . 
P 6 HOH A 24 624 714 HOH HOH . 
P 6 HOH A 25 625 622 HOH HOH . 
P 6 HOH A 26 626 717 HOH HOH . 
P 6 HOH A 27 627 640 HOH HOH . 
P 6 HOH A 28 628 639 HOH HOH . 
P 6 HOH A 29 629 621 HOH HOH . 
P 6 HOH A 30 630 680 HOH HOH . 
P 6 HOH A 31 631 713 HOH HOH . 
P 6 HOH A 32 632 695 HOH HOH . 
P 6 HOH A 33 633 638 HOH HOH . 
P 6 HOH A 34 634 609 HOH HOH . 
P 6 HOH A 35 635 601 HOH HOH . 
P 6 HOH A 36 636 693 HOH HOH . 
P 6 HOH A 37 637 716 HOH HOH . 
P 6 HOH A 38 638 626 HOH HOH . 
P 6 HOH A 39 639 684 HOH HOH . 
P 6 HOH A 40 640 662 HOH HOH . 
P 6 HOH A 41 641 726 HOH HOH . 
P 6 HOH A 42 642 604 HOH HOH . 
P 6 HOH A 43 643 656 HOH HOH . 
P 6 HOH A 44 644 602 HOH HOH . 
P 6 HOH A 45 645 784 HOH HOH . 
P 6 HOH A 46 646 738 HOH HOH . 
P 6 HOH A 47 647 681 HOH HOH . 
P 6 HOH A 48 648 701 HOH HOH . 
P 6 HOH A 49 649 634 HOH HOH . 
P 6 HOH A 50 650 690 HOH HOH . 
P 6 HOH A 51 651 617 HOH HOH . 
P 6 HOH A 52 652 779 HOH HOH . 
P 6 HOH A 53 653 758 HOH HOH . 
P 6 HOH A 54 654 677 HOH HOH . 
P 6 HOH A 55 655 752 HOH HOH . 
P 6 HOH A 56 656 618 HOH HOH . 
P 6 HOH A 57 657 749 HOH HOH . 
P 6 HOH A 58 658 781 HOH HOH . 
P 6 HOH A 59 659 620 HOH HOH . 
P 6 HOH A 60 660 771 HOH HOH . 
P 6 HOH A 61 661 649 HOH HOH . 
P 6 HOH A 62 662 607 HOH HOH . 
P 6 HOH A 63 663 735 HOH HOH . 
P 6 HOH A 64 664 667 HOH HOH . 
P 6 HOH A 65 665 704 HOH HOH . 
P 6 HOH A 66 666 769 HOH HOH . 
P 6 HOH A 67 667 708 HOH HOH . 
P 6 HOH A 68 668 625 HOH HOH . 
P 6 HOH A 69 669 610 HOH HOH . 
P 6 HOH A 70 670 624 HOH HOH . 
P 6 HOH A 71 671 679 HOH HOH . 
P 6 HOH A 72 672 646 HOH HOH . 
P 6 HOH A 73 673 678 HOH HOH . 
P 6 HOH A 74 674 619 HOH HOH . 
P 6 HOH A 75 675 659 HOH HOH . 
P 6 HOH A 76 676 686 HOH HOH . 
P 6 HOH A 77 677 613 HOH HOH . 
P 6 HOH A 78 678 631 HOH HOH . 
P 6 HOH A 79 679 682 HOH HOH . 
P 6 HOH A 80 680 627 HOH HOH . 
P 6 HOH A 81 681 658 HOH HOH . 
P 6 HOH A 82 682 666 HOH HOH . 
P 6 HOH A 83 683 643 HOH HOH . 
P 6 HOH A 84 684 674 HOH HOH . 
P 6 HOH A 85 685 633 HOH HOH . 
P 6 HOH A 86 686 731 HOH HOH . 
P 6 HOH A 87 687 720 HOH HOH . 
P 6 HOH A 88 688 608 HOH HOH . 
P 6 HOH A 89 689 653 HOH HOH . 
P 6 HOH A 90 690 700 HOH HOH . 
P 6 HOH A 91 691 712 HOH HOH . 
P 6 HOH A 92 692 767 HOH HOH . 
P 6 HOH A 93 693 647 HOH HOH . 
P 6 HOH A 94 694 605 HOH HOH . 
P 6 HOH A 95 695 628 HOH HOH . 
P 6 HOH A 96 696 652 HOH HOH . 
P 6 HOH A 97 697 782 HOH HOH . 
P 6 HOH A 98 698 635 HOH HOH . 
P 6 HOH A 99 699 671 HOH HOH . 
P 6 HOH A 100 700 762 HOH HOH . 
P 6 HOH A 101 701 710 HOH HOH . 
P 6 HOH A 102 702 650 HOH HOH . 
P 6 HOH A 103 703 692 HOH HOH . 
P 6 HOH A 104 704 729 HOH HOH . 
P 6 HOH A 105 705 699 HOH HOH . 
P 6 HOH A 106 706 734 HOH HOH . 
P 6 HOH A 107 707 711 HOH HOH . 
P 6 HOH A 108 708 672 HOH HOH . 
P 6 HOH A 109 709 645 HOH HOH . 
P 6 HOH A 110 710 669 HOH HOH . 
P 6 HOH A 111 711 651 HOH HOH . 
P 6 HOH A 112 712 611 HOH HOH . 
P 6 HOH A 113 713 685 HOH HOH . 
P 6 HOH A 114 714 676 HOH HOH . 
P 6 HOH A 115 715 732 HOH HOH . 
P 6 HOH A 116 716 632 HOH HOH . 
P 6 HOH A 117 717 703 HOH HOH . 
P 6 HOH A 118 718 774 HOH HOH . 
P 6 HOH A 119 719 783 HOH HOH . 
P 6 HOH A 120 720 615 HOH HOH . 
P 6 HOH A 121 721 654 HOH HOH . 
P 6 HOH A 122 722 702 HOH HOH . 
P 6 HOH A 123 723 764 HOH HOH . 
P 6 HOH A 124 724 660 HOH HOH . 
P 6 HOH A 125 725 697 HOH HOH . 
P 6 HOH A 126 726 763 HOH HOH . 
P 6 HOH A 127 727 765 HOH HOH . 
P 6 HOH A 128 728 786 HOH HOH . 
P 6 HOH A 129 729 644 HOH HOH . 
P 6 HOH A 130 730 777 HOH HOH . 
P 6 HOH A 131 731 665 HOH HOH . 
P 6 HOH A 132 732 750 HOH HOH . 
P 6 HOH A 133 733 727 HOH HOH . 
P 6 HOH A 134 734 694 HOH HOH . 
P 6 HOH A 135 735 775 HOH HOH . 
P 6 HOH A 136 736 743 HOH HOH . 
P 6 HOH A 137 737 780 HOH HOH . 
P 6 HOH A 138 738 706 HOH HOH . 
P 6 HOH A 139 739 629 HOH HOH . 
P 6 HOH A 140 740 687 HOH HOH . 
P 6 HOH A 141 741 759 HOH HOH . 
P 6 HOH A 142 742 709 HOH HOH . 
P 6 HOH A 143 743 753 HOH HOH . 
P 6 HOH A 144 744 785 HOH HOH . 
P 6 HOH A 145 745 664 HOH HOH . 
P 6 HOH A 146 746 630 HOH HOH . 
P 6 HOH A 147 747 707 HOH HOH . 
P 6 HOH A 148 748 661 HOH HOH . 
P 6 HOH A 149 749 747 HOH HOH . 
P 6 HOH A 150 750 718 HOH HOH . 
P 6 HOH A 151 751 741 HOH HOH . 
P 6 HOH A 152 752 745 HOH HOH . 
P 6 HOH A 153 753 772 HOH HOH . 
P 6 HOH A 154 754 761 HOH HOH . 
P 6 HOH A 155 755 736 HOH HOH . 
P 6 HOH A 156 756 739 HOH HOH . 
P 6 HOH A 157 757 722 HOH HOH . 
P 6 HOH A 158 758 725 HOH HOH . 
P 6 HOH A 159 759 657 HOH HOH . 
P 6 HOH A 160 760 773 HOH HOH . 
P 6 HOH A 161 761 742 HOH HOH . 
P 6 HOH A 162 762 740 HOH HOH . 
P 6 HOH A 163 763 778 HOH HOH . 
P 6 HOH A 164 764 770 HOH HOH . 
P 6 HOH A 165 765 776 HOH HOH . 
P 6 HOH A 166 766 728 HOH HOH . 
P 6 HOH A 167 767 787 HOH HOH . 
P 6 HOH A 168 768 719 HOH HOH . 
P 6 HOH A 169 769 760 HOH HOH . 
P 6 HOH A 170 770 754 HOH HOH . 
P 6 HOH A 171 771 746 HOH HOH . 
P 6 HOH A 172 772 733 HOH HOH . 
P 6 HOH A 173 773 721 HOH HOH . 
P 6 HOH A 174 774 691 HOH HOH . 
P 6 HOH A 175 775 730 HOH HOH . 
P 6 HOH A 176 776 768 HOH HOH . 
P 6 HOH A 177 777 737 HOH HOH . 
P 6 HOH A 178 778 751 HOH HOH . 
P 6 HOH A 179 779 756 HOH HOH . 
P 6 HOH A 180 780 766 HOH HOH . 
P 6 HOH A 181 781 648 HOH HOH . 
P 6 HOH A 182 782 689 HOH HOH . 
P 6 HOH A 183 783 757 HOH HOH . 
P 6 HOH A 184 784 755 HOH HOH . 
P 6 HOH A 185 785 715 HOH HOH . 
P 6 HOH A 186 786 744 HOH HOH . 
P 6 HOH A 187 787 723 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -6.698 10.378 34.762 1 56.5 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 4 -6.002 11.315 35.56 1 48.78 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 4 -8.162 10.342 35.128 1 58.53 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 4 -8.819 9.348 34.341 1 58.9 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 4 -8.402 10.049 36.587 1 59.06 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 4 -9.778 10.171 36.879 1 62.61 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#