data_6DAA # _model_server_result.job_id 6G3JYTFyke_fG8QFxGSiFw _model_server_result.datetime_utc '2024-11-24 16:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6daa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6DAA # _exptl.entry_id 6DAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.672 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DAA _cell.length_a 76.329 _cell.length_b 101.92 _cell.length_c 126.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 G0M . A G0M 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C29 H35 N3 O3 S' _chem_comp.formula_weight 505.672 _chem_comp.id G0M _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 G0M sing 83 n n C33 C32 G0M doub 84 n y C33 C34 G0M sing 85 n y C32 C31 G0M sing 86 n y C27 C28 G0M doub 87 n y C27 N26 G0M sing 88 n y C04 C02 G0M sing 89 n n C28 C29 G0M sing 90 n y C02 O05 G0M sing 91 n n C02 C03 G0M sing 92 n n C30 C31 G0M sing 93 n n C30 C09 G0M sing 94 n n N26 C25 G0M doub 95 n y C34 C35 G0M doub 96 n y O05 C06 G0M sing 97 n n C31 C36 G0M doub 98 n y N08 C06 G0M sing 99 n n N08 C09 G0M sing 100 n n C06 O07 G0M doub 101 n n C29 C24 G0M doub 102 n y C09 C10 G0M sing 103 n n C35 C36 G0M sing 104 n y C25 C24 G0M sing 105 n y C24 C23 G0M sing 106 n n C10 S11 G0M sing 107 n n C12 C13 G0M sing 108 n n C12 C20 G0M sing 109 n n C12 S11 G0M sing 110 n n N22 C23 G0M sing 111 n n N22 C20 G0M sing 112 n n C13 C14 G0M sing 113 n n C20 O21 G0M doub 114 n n C15 C14 G0M doub 115 n y C15 C16 G0M sing 116 n y C14 C19 G0M sing 117 n y C16 C17 G0M doub 118 n y C19 C18 G0M doub 119 n y C17 C18 G0M sing 120 n y C10 H1 G0M sing 121 n n C10 H2 G0M sing 122 n n C12 H3 G0M sing 123 n n C13 H4 G0M sing 124 n n C13 H5 G0M sing 125 n n C15 H6 G0M sing 126 n n C16 H7 G0M sing 127 n n C17 H8 G0M sing 128 n n C18 H9 G0M sing 129 n n C01 H10 G0M sing 130 n n C01 H11 G0M sing 131 n n C01 H12 G0M sing 132 n n C03 H13 G0M sing 133 n n C03 H14 G0M sing 134 n n C03 H15 G0M sing 135 n n C04 H16 G0M sing 136 n n C04 H17 G0M sing 137 n n C04 H18 G0M sing 138 n n C09 H19 G0M sing 139 n n C19 H20 G0M sing 140 n n C23 H21 G0M sing 141 n n C23 H22 G0M sing 142 n n C25 H23 G0M sing 143 n n C27 H24 G0M sing 144 n n C28 H25 G0M sing 145 n n C29 H26 G0M sing 146 n n C30 H27 G0M sing 147 n n C30 H28 G0M sing 148 n n C32 H29 G0M sing 149 n n C33 H30 G0M sing 150 n n C34 H31 G0M sing 151 n n C35 H32 G0M sing 152 n n C36 H33 G0M sing 153 n n N08 H34 G0M sing 154 n n N22 H35 G0M sing 155 n n # _atom_sites.entry_id 6DAA _atom_sites.fract_transf_matrix[1][1] 0.013101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 G0M A 1 602 700 G0M 140 . D 4 HOH A 1 701 12 HOH HOH . D 4 HOH A 2 702 7 HOH HOH . D 4 HOH A 3 703 2 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 15 HOH HOH . D 4 HOH A 6 706 14 HOH HOH . D 4 HOH A 7 707 5 HOH HOH . D 4 HOH A 8 708 16 HOH HOH . D 4 HOH A 9 709 1 HOH HOH . D 4 HOH A 10 710 11 HOH HOH . D 4 HOH A 11 711 19 HOH HOH . D 4 HOH A 12 712 10 HOH HOH . D 4 HOH A 13 713 8 HOH HOH . D 4 HOH A 14 714 17 HOH HOH . D 4 HOH A 15 715 13 HOH HOH . D 4 HOH A 16 716 18 HOH HOH . D 4 HOH A 17 717 20 HOH HOH . D 4 HOH A 18 718 6 HOH HOH . D 4 HOH A 19 719 3 HOH HOH . D 4 HOH A 20 720 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G0M . . . C 3 -22.778 -16.664 -7.773 1 154.9 ? C10 G0M 602 A 1 HETATM 2 C C12 G0M . . . C 3 -22.239 -19.315 -6.768 1 143.68 ? C12 G0M 602 A 1 HETATM 3 C C13 G0M . . . C 3 -23.355 -20.454 -6.646 1 128.72 ? C13 G0M 602 A 1 HETATM 4 C C14 G0M . . . C 3 -24.509 -20.288 -5.735 1 120.55 ? C14 G0M 602 A 1 HETATM 5 C C15 G0M . . . C 3 -25.828 -20.406 -6.185 1 130.14 ? C15 G0M 602 A 1 HETATM 6 C C16 G0M . . . C 3 -26.937 -20.283 -5.373 1 146.16 ? C16 G0M 602 A 1 HETATM 7 C C17 G0M . . . C 3 -26.75 -20.041 -4.017 1 156.04 ? C17 G0M 602 A 1 HETATM 8 C C18 G0M . . . C 3 -25.451 -19.934 -3.539 1 140.35 ? C18 G0M 602 A 1 HETATM 9 C C01 G0M . . . C 3 -26.741 -14.204 -11.553 1 142.2 ? C01 G0M 602 A 1 HETATM 10 C C02 G0M . . . C 3 -27.363 -14.88 -10.3 1 153.1 ? C02 G0M 602 A 1 HETATM 11 C C03 G0M . . . C 3 -27.419 -13.916 -9.09 1 154.95 ? C03 G0M 602 A 1 HETATM 12 C C04 G0M . . . C 3 -28.831 -15.303 -10.673 1 156.87 ? C04 G0M 602 A 1 HETATM 13 C C06 G0M . . . C 3 -25.175 -16.048 -9.672 1 162.03 ? C06 G0M 602 A 1 HETATM 14 C C09 G0M . . . C 3 -23.275 -17.773 -8.925 1 140.05 ? C09 G0M 602 A 1 HETATM 15 C C19 G0M . . . C 3 -24.35 -20.06 -4.373 1 123.95 ? C19 G0M 602 A 1 HETATM 16 C C20 G0M . . . C 3 -20.867 -19.833 -6.372 1 132.58 ? C20 G0M 602 A 1 HETATM 17 C C23 G0M . . . C 3 -19.559 -21.895 -6.673 1 95.09 ? C23 G0M 602 A 1 HETATM 18 C C24 G0M . . . C 3 -19.303 -22.161 -8.133 1 65.16 ? C24 G0M 602 A 1 HETATM 19 C C25 G0M . . . C 3 -18.069 -22.41 -8.617 1 64.01 ? C25 G0M 602 A 1 HETATM 20 C C27 G0M . . . C 3 -18.776 -22.638 -10.832 1 66.96 ? C27 G0M 602 A 1 HETATM 21 C C28 G0M . . . C 3 -20.102 -22.384 -10.454 1 59.43 ? C28 G0M 602 A 1 HETATM 22 C C29 G0M . . . C 3 -20.326 -22.127 -9.097 1 55.72 ? C29 G0M 602 A 1 HETATM 23 C C30 G0M . . . C 3 -22.173 -18.399 -9.938 1 118.06 ? C30 G0M 602 A 1 HETATM 24 C C31 G0M . . . C 3 -20.669 -18.187 -9.837 1 106.24 ? C31 G0M 602 A 1 HETATM 25 C C32 G0M . . . C 3 -19.898 -18.44 -10.999 1 100.38 ? C32 G0M 602 A 1 HETATM 26 C C33 G0M . . . C 3 -18.542 -18.287 -11.02 1 76.9 ? C33 G0M 602 A 1 HETATM 27 C C34 G0M . . . C 3 -17.892 -17.847 -9.872 1 81.28 ? C34 G0M 602 A 1 HETATM 28 C C35 G0M . . . C 3 -18.6 -17.585 -8.712 1 73.19 ? C35 G0M 602 A 1 HETATM 29 C C36 G0M . . . C 3 -19.973 -17.758 -8.692 1 93.33 ? C36 G0M 602 A 1 HETATM 30 N N08 G0M . . . C 3 -24.452 -17.295 -9.722 1 149.68 ? N08 G0M 602 A 1 HETATM 31 N N22 G0M . . . C 3 -20.662 -21.107 -6.738 1 109.26 ? N22 G0M 602 A 1 HETATM 32 N N26 G0M . . . C 3 -17.765 -22.652 -9.911 1 65.95 ? N26 G0M 602 A 1 HETATM 33 O O05 G0M . . . C 3 -26.595 -16.066 -9.86 1 163.89 ? O05 G0M 602 A 1 HETATM 34 O O07 G0M . . . C 3 -24.593 -14.999 -9.495 1 165.47 ? O07 G0M 602 A 1 HETATM 35 O O21 G0M . . . C 3 -20.044 -19.162 -5.813 1 141.95 ? O21 G0M 602 A 1 HETATM 36 S S11 G0M . . . C 3 -22.55 -17.559 -6.094 1 165.57 ? S11 G0M 602 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #