data_6DAB # _model_server_result.job_id 0aqbYLrYO0XQn5m3SHC_6g _model_server_result.datetime_utc '2024-11-24 15:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6DAB # _exptl.entry_id 6DAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DAB _cell.length_a 77.199 _cell.length_b 101.119 _cell.length_c 126.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N29 G0V . A G0V 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 218 n n CHA C4D HEM doub 219 n n CHA HHA HEM sing 220 n n CHB C4A HEM sing 221 n n CHB C1B HEM doub 222 n n CHB HHB HEM sing 223 n n CHC C4B HEM sing 224 n n CHC C1C HEM doub 225 n n CHC HHC HEM sing 226 n n CHD C4C HEM doub 227 n n CHD C1D HEM sing 228 n n CHD HHD HEM sing 229 n n C1A C2A HEM doub 230 n y C1A NA HEM sing 231 n y C2A C3A HEM sing 232 n y C2A CAA HEM sing 233 n n C3A C4A HEM doub 234 n y C3A CMA HEM sing 235 n n C4A NA HEM sing 236 n y CMA HMA HEM sing 237 n n CMA HMAA HEM sing 238 n n CMA HMAB HEM sing 239 n n CAA CBA HEM sing 240 n n CAA HAA HEM sing 241 n n CAA HAAA HEM sing 242 n n CBA CGA HEM sing 243 n n CBA HBA HEM sing 244 n n CBA HBAA HEM sing 245 n n CGA O1A HEM doub 246 n n CGA O2A HEM sing 247 n n C1B C2B HEM sing 248 n n C1B NB HEM sing 249 n n C2B C3B HEM doub 250 n n C2B CMB HEM sing 251 n n C3B C4B HEM sing 252 n n C3B CAB HEM sing 253 n n C4B NB HEM doub 254 n n CMB HMB HEM sing 255 n n CMB HMBA HEM sing 256 n n CMB HMBB HEM sing 257 n n CAB CBB HEM doub 258 n n CAB HAB HEM sing 259 n n CBB HBB HEM sing 260 n n CBB HBBA HEM sing 261 n n C1C C2C HEM sing 262 n y C1C NC HEM sing 263 n y C2C C3C HEM doub 264 n y C2C CMC HEM sing 265 n n C3C C4C HEM sing 266 n y C3C CAC HEM sing 267 n n C4C NC HEM sing 268 n y CMC HMC HEM sing 269 n n CMC HMCA HEM sing 270 n n CMC HMCB HEM sing 271 n n CAC CBC HEM doub 272 n n CAC HAC HEM sing 273 n n CBC HBC HEM sing 274 n n CBC HBCA HEM sing 275 n n C1D C2D HEM sing 276 n n C1D ND HEM doub 277 n n C2D C3D HEM doub 278 n n C2D CMD HEM sing 279 n n C3D C4D HEM sing 280 n n C3D CAD HEM sing 281 n n C4D ND HEM sing 282 n n CMD HMD HEM sing 283 n n CMD HMDA HEM sing 284 n n CMD HMDB HEM sing 285 n n CAD CBD HEM sing 286 n n CAD HAD HEM sing 287 n n CAD HADA HEM sing 288 n n CBD CGD HEM sing 289 n n CBD HBD HEM sing 290 n n CBD HBDA HEM sing 291 n n CGD O1D HEM doub 292 n n CGD O2D HEM sing 293 n n O2A H2A HEM sing 294 n n O2D H2D HEM sing 295 n n FE NA HEM sing 296 n n FE NB HEM sing 297 n n FE NC HEM sing 298 n n FE ND HEM sing 299 n n # _atom_sites.entry_id 6DAB _atom_sites.fract_transf_matrix[1][1] 0.012954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 605 GOL GOL . D 4 G0V A 1 603 700 G0V 280 . E 5 HOH A 1 701 9 HOH HOH . E 5 HOH A 2 702 8 HOH HOH . E 5 HOH A 3 703 10 HOH HOH . E 5 HOH A 4 704 5 HOH HOH . E 5 HOH A 5 705 7 HOH HOH . E 5 HOH A 6 706 1 HOH HOH . E 5 HOH A 7 707 3 HOH HOH . E 5 HOH A 8 708 6 HOH HOH . E 5 HOH A 9 709 4 HOH HOH . E 5 HOH A 10 710 2 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.249 -30.485 -8.902 1 75.05 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.765 -27.691 -12.819 1 65.56 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -22.119 -23.792 -10.043 1 63.85 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.178 -26.474 -6.146 1 72.63 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.153 -30.075 -10.199 1 82.59 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.231 -30.924 -11.369 1 79.31 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.105 -30.139 -12.441 1 66.09 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.934 -28.781 -11.979 1 74.09 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.117 -30.559 -13.926 1 66.15 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.446 -32.453 -11.377 1 63.46 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.941 -32.682 -11.61 1 68.17 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.255 -34.119 -11.95 1 75.22 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.421 -34.358 -12.406 1 82.75 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.373 -35.013 -11.775 1 64.4 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.508 -26.391 -12.433 1 60.97 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -22.235 -25.252 -13.295 1 78.65 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -22.027 -24.164 -12.508 1 75.96 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.21 -24.594 -11.149 1 64.76 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -22.182 -25.352 -14.841 1 70.66 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.743 -22.669 -12.855 1 76.54 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.988 -22.109 -14.047 1 81.58 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.398 -24.165 -8.752 1 80.48 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.433 -23.267 -7.625 1 81.72 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.738 -23.984 -6.542 1 71.8 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.901 -25.381 -6.946 1 76.28 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.204 -21.729 -7.652 1 75.7 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.865 -23.32 -5.142 1 71.54 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.347 -23.999 -4.107 1 87.37 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.234 -27.802 -6.547 1 60.78 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.417 -28.942 -5.676 1 76.82 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.442 -30.035 -6.432 1 81.66 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.276 -29.641 -7.821 1 62.45 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.561 -28.894 -4.144 1 65.51 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.639 -31.484 -5.949 1 65.16 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.135 -31.809 -6.008 1 58.2 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.369 -33.118 -5.239 1 74.99 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.427 -33.312 -4.549 1 59.83 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.444 -33.982 -5.27 1 71.39 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.972 -28.767 -10.599 1 66.33 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.494 -25.945 -11.14 1 80.69 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.664 -25.449 -8.31 1 73.75 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.147 -28.282 -7.83 1 74.81 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -22.785 -27.071 -9.456 1 68.63 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #